Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30867 * 125.81098 * 2 1 4 4 N 1.40071 * 108.37781 * 180.14498 * 3 2 1 5 5 C 1.40151 * 126.07345 * 179.85407 * 4 3 2 6 6 C 1.38845 * 120.06715 * 359.69306 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38279 * 120.13657 * 359.97438 * 8 7 6 10 10 C 1.38117 * 120.06739 * 0.02562 * 9 8 7 11 11 C 1.36118 * 107.85293 * 359.59401 * 4 3 2 12 12 C 1.35731 * 107.53094 * 0.24149 * 11 4 3 13 13 N 1.40801 * 126.07191 * 180.02562 * 12 11 4 14 14 C 1.34777 * 120.00018 * 359.96729 * 13 12 11 15 15 O 1.21606 * 119.99816 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.40186 * 120.00000 * 179.97438 * 16 14 13 18 18 C 1.40395 * 125.97303 * 359.72136 * 17 16 14 19 19 C 1.35242 * 107.86622 * 179.86139 * 18 17 16 20 20 N 1.34967 * 107.86142 * 0.39257 * 19 18 17 21 21 C 1.46493 * 125.97907 * 179.72671 * 20 19 18 22 22 C 1.50703 * 109.47123 * 125.00323 * 21 20 19 23 23 H 1.07999 * 119.99708 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00186 * 180.02562 * 22 21 20 25 25 N 1.31514 * 119.99923 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00255 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46995 * 59.99502 * 26 24 22 28 28 H 1.48500 * 109.47557 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47074 * 299.99858 * 26 24 22 30 30 N 1.31211 * 125.96729 * 180.02562 * 17 16 14 31 31 H 1.08996 * 109.47087 * 270.30035 * 1 2 3 32 32 H 1.09000 * 109.46667 * 30.29935 * 1 2 3 33 33 H 1.09000 * 109.47113 * 150.29770 * 1 2 3 34 34 H 1.07994 * 120.03741 * 0.25564 * 6 5 4 35 35 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.93174 * 179.97438 * 8 7 6 37 37 H 1.08007 * 119.96902 * 179.97438 * 9 8 7 38 38 H 1.07995 * 120.03357 * 179.97438 * 10 9 8 39 39 H 1.08000 * 126.23582 * 180.21785 * 11 4 3 40 40 H 0.97002 * 120.00388 * 179.97438 * 13 12 11 41 41 H 0.97007 * 119.99752 * 0.02562 * 16 14 13 42 42 H 1.07998 * 126.06605 * 359.97438 * 18 17 16 43 43 H 1.08006 * 126.06903 * 180.14859 * 19 18 17 44 44 H 1.09001 * 109.47524 * 245.00431 * 21 20 19 45 45 H 1.09009 * 109.47027 * 5.00293 * 21 20 19 46 46 H 0.96999 * 120.00655 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2728 1.0613 0.0000 4 7 3.6092 0.6416 -0.0034 5 6 4.7359 1.4751 -0.0073 6 6 4.5805 2.8549 -0.0146 7 6 5.6928 3.6736 -0.0180 8 6 6.9602 3.1206 -0.0146 9 6 7.1182 1.7469 -0.0073 10 6 6.0098 0.9229 -0.0040 11 6 3.6192 -0.7195 0.0038 12 6 2.3279 -1.1378 0.0059 13 7 1.8900 -2.4760 0.0134 14 6 2.7898 -3.4795 0.0186 15 8 3.9798 -3.2291 0.0173 16 7 2.3706 -4.7604 0.0263 17 6 3.3065 -5.8041 0.0312 18 6 4.7030 -5.6597 0.0233 19 6 5.2482 -6.8973 0.0348 20 7 4.2395 -7.7940 0.0407 21 6 4.3839 -9.2518 0.0478 22 6 3.6240 -9.8262 1.2155 23 1 3.0868 -9.1709 1.8852 24 6 3.6145 -11.1883 1.4291 25 7 4.2682 -11.9863 0.6133 26 14 2.6732 -11.9002 2.8769 27 1 1.2362 -11.5461 2.7554 28 1 2.8194 -13.3780 2.8841 29 1 3.2151 -11.3426 4.1421 30 7 3.0303 -7.0868 0.0383 31 1 -0.3633 0.0054 1.0276 32 1 -0.3633 0.8873 -0.5185 33 1 -0.3633 -0.8926 -0.5092 34 1 3.5909 3.2874 -0.0131 35 1 5.5726 4.7469 -0.0241 36 1 7.8284 3.7629 -0.0177 37 1 8.1094 1.3179 -0.0051 38 1 6.1338 -0.1499 0.0013 39 1 4.4950 -1.3515 0.0068 40 1 0.9408 -2.6757 0.0148 41 1 1.4213 -4.9601 0.0278 42 1 5.2455 -4.7259 0.0120 43 1 6.3035 -7.1273 0.0350 44 1 3.9863 -9.6608 -0.8811 45 1 5.4387 -9.5120 0.1372 46 1 4.2613 -12.9446 0.7632 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191623650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 173.353086 kcal Electronic energy + Delta-G solvation = -30691.813916 eV Core-core repulsion = 26392.833284 eV Total energy + Delta-G solvation = -4298.980631 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99175 -40.76645 -39.74144 -39.15092 -35.41202 -34.85151 -33.82704 -33.33320 -31.49754 -31.05352 -30.90793 -29.41996 -29.01628 -27.60127 -26.63550 -24.05949 -23.08359 -22.89201 -22.05754 -21.29643 -20.40506 -20.04646 -19.69713 -18.74312 -17.64619 -17.03143 -16.60036 -16.40675 -16.04772 -15.93879 -15.31586 -15.26066 -15.06438 -14.74879 -14.59434 -14.22269 -14.10124 -13.91594 -13.82443 -13.72822 -13.18147 -12.86905 -12.78671 -12.52149 -12.37860 -12.27362 -11.99726 -11.86787 -11.58047 -11.35456 -11.06292 -11.01631 -10.87713 -10.51683 -10.27535 -10.16987 -10.14428 -9.75965 -9.54225 -9.38442 -8.90542 -8.64475 -8.19522 -7.83672 -7.44046 -6.25693 -4.30949 0.53219 0.96837 1.85099 1.87814 2.18930 2.38271 2.70231 3.09541 3.24390 3.27872 3.31825 3.45284 3.50398 3.76843 4.00591 4.22813 4.32823 4.41578 4.52335 4.56747 4.74735 4.91512 4.99854 5.05260 5.09370 5.19545 5.21808 5.36101 5.43924 5.45982 5.51415 5.64176 5.74391 5.81720 5.98240 6.02685 6.12774 6.14205 6.33882 6.43228 6.48367 6.55670 6.81074 6.92910 6.95858 7.05727 7.33372 7.40679 7.66425 7.74858 7.89655 8.02294 8.38962 8.60434 8.78080 9.34683 10.82933 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.001732 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.123034 B =16167.014618 C =17468.948560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.073 3.927 3 N -0.278 5.278 4 N -0.325 5.325 5 C 0.172 3.828 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.140 4.140 11 C 0.043 3.957 12 C 0.029 3.971 13 N -0.652 5.652 14 C 0.716 3.284 15 O -0.560 6.560 16 N -0.637 5.637 17 C 0.274 3.726 18 C -0.286 4.286 19 C 0.052 3.948 20 N -0.318 5.318 21 C 0.258 3.742 22 C -0.530 4.530 23 H 0.068 0.932 24 C 0.062 3.938 25 N -0.895 5.895 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.275 1.275 30 N -0.305 5.305 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.208 0.792 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 29.213 -2.576 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 N -0.099 5.099 4 N -0.103 5.103 5 C 0.079 3.921 6 C -0.146 4.146 7 C -0.116 4.116 8 C -0.154 4.154 9 C -0.109 4.109 10 C -0.161 4.161 11 C -0.100 4.100 12 C -0.075 4.075 13 N -0.300 5.300 14 C 0.416 3.584 15 O -0.435 6.435 16 N -0.286 5.286 17 C 0.020 3.980 18 C -0.317 4.317 19 C -0.098 4.098 20 N -0.100 5.100 21 C 0.141 3.859 22 C -0.568 4.568 23 H 0.086 0.914 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.735 3.265 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.200 1.200 30 N -0.136 5.136 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.224 0.776 40 H 0.245 0.755 41 H 0.244 0.756 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.757 29.417 -2.615 29.543 hybrid contribution -0.832 -1.181 0.760 1.633 sum -1.590 28.236 -1.855 28.341 Atomic orbital electron populations 1.20230 0.85855 1.03791 1.03484 1.22280 0.97151 0.88736 1.01489 1.77258 0.85913 1.22007 1.24690 1.45499 1.03772 1.04207 1.56797 1.17514 0.83474 0.89685 1.01396 1.20880 1.00391 0.90867 1.02452 1.21047 0.91861 0.99887 0.98769 1.21227 0.97502 0.95198 1.01434 1.21014 0.98292 0.93358 0.98260 1.20961 0.90194 1.01212 1.03689 1.23147 0.99881 0.83289 1.03692 1.17202 0.92088 0.83452 1.14789 1.41757 1.09302 1.01777 1.77191 1.15429 0.84902 0.79797 0.78288 1.90714 1.14398 1.82011 1.56378 1.41191 1.09100 1.02120 1.76196 1.18723 0.88760 0.87014 1.03498 1.21478 0.91729 0.98436 1.20060 1.22563 0.95531 0.89336 1.02370 1.49076 1.01051 1.08165 1.51738 1.19750 0.98981 0.67892 0.99280 1.21214 1.32269 0.92247 1.11063 0.91353 1.24941 0.95467 0.96591 0.97050 1.69905 1.41695 1.04484 1.37232 0.86384 0.80364 0.77629 0.82094 1.19957 1.21043 1.20047 1.77338 1.06989 1.01068 1.28172 0.89939 0.90139 0.90391 0.84619 0.85226 0.85515 0.84898 0.84707 0.77578 0.75471 0.75569 0.82177 0.81478 0.93699 0.92495 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.29 36.01 0.37 -0.09 16 2 C 0.07 0.76 7.22 -82.22 -0.59 0.17 16 3 N -0.28 -3.37 11.86 33.76 0.40 -2.97 16 4 N -0.32 -4.01 3.82 -10.40 -0.04 -4.05 16 5 C 0.17 1.89 6.69 -83.60 -0.56 1.33 16 6 C -0.13 -1.19 9.66 -39.40 -0.38 -1.57 16 7 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 8 C -0.13 -0.92 10.04 -39.55 -0.40 -1.31 16 9 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 10 C -0.14 -1.33 9.46 -39.40 -0.37 -1.71 16 11 C 0.04 0.54 9.68 -16.55 -0.16 0.38 16 12 C 0.03 0.34 6.90 -83.85 -0.58 -0.24 16 13 N -0.65 -6.76 5.48 -14.38 -0.08 -6.84 16 14 C 0.72 9.94 8.51 -86.92 -0.74 9.20 16 15 O -0.56 -9.10 10.62 5.27 0.06 -9.04 16 16 N -0.64 -9.25 5.45 -15.51 -0.08 -9.33 16 17 C 0.27 5.27 8.11 -154.37 -1.25 4.01 16 18 C -0.29 -5.42 9.61 -39.84 -0.38 -5.80 16 19 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 20 N -0.32 -7.22 3.67 -62.56 -0.23 -7.45 16 21 C 0.26 6.45 6.26 -5.20 -0.03 6.42 16 22 C -0.53 -14.53 9.24 -34.44 -0.32 -14.85 16 23 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 26 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 30 N -0.30 -6.80 12.42 31.44 0.39 -6.40 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.33 7.69 -51.93 -0.40 -0.07 16 34 H 0.14 1.26 7.70 -52.49 -0.40 0.86 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.14 1.23 6.75 -52.49 -0.35 0.88 16 39 H 0.21 2.73 4.85 -52.49 -0.25 2.47 16 40 H 0.41 2.77 8.22 -40.82 -0.34 2.44 16 41 H 0.41 4.65 8.84 -40.82 -0.36 4.29 16 42 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 43 H 0.17 2.62 8.06 -52.48 -0.42 2.20 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.39 8.07 -51.92 -0.42 0.98 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -34.06 396.92 -9.72 -43.77 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.34 Total: 8.36 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -6.49 Total: -3.84 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 1.09 Total: -61.36 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.06 -9.72 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191623650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.128 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds