Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 108.75418 * 2 1 4 4 C 1.53842 * 108.69196 * 241.71468 * 2 1 3 5 5 C 1.52915 * 115.30689 * 195.28138 * 4 2 1 6 6 N 1.45583 * 109.22760 * 318.39165 * 5 4 2 7 7 C 1.46899 * 110.99498 * 226.09663 * 6 5 4 8 8 C 1.50692 * 109.47119 * 305.86391 * 7 6 5 9 9 C 1.38294 * 119.97443 * 270.30115 * 8 7 6 10 10 C 1.38244 * 120.11199 * 180.25850 * 9 8 7 11 11 C 1.38171 * 120.05436 * 359.44067 * 10 9 8 12 12 C 1.38706 * 119.94402 * 0.28089 * 11 10 9 13 13 O 1.35899 * 120.05784 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99901 * 0.02562 * 13 12 11 15 15 C 1.53003 * 109.47295 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46844 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00346 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99653 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00031 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99977 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47027 * 90.00028 * 20 18 16 22 22 H 1.48500 * 109.47001 * 209.99748 * 20 18 16 23 23 H 1.48494 * 109.47235 * 330.00138 * 20 18 16 24 24 C 1.38125 * 119.97454 * 90.00284 * 8 7 6 25 25 C 1.47103 * 108.04400 * 104.17292 * 6 5 4 26 26 C 1.45732 * 115.33377 * 266.98510 * 25 6 5 27 27 S 1.80055 * 108.78752 * 118.34308 * 2 1 3 28 28 O 1.42098 * 108.59652 * 91.99640 * 27 2 1 29 29 O 1.42104 * 108.58986 * 320.91397 * 27 2 1 30 30 H 1.08997 * 109.46543 * 301.66065 * 1 2 3 31 31 H 1.08998 * 109.47181 * 61.65648 * 1 2 3 32 32 H 1.08996 * 109.46861 * 181.66005 * 1 2 3 33 33 H 1.09002 * 108.31656 * 316.79289 * 4 2 1 34 34 H 1.09003 * 108.31714 * 73.77442 * 4 2 1 35 35 H 1.08990 * 109.51225 * 198.46257 * 5 4 2 36 36 H 1.08999 * 109.50725 * 78.31206 * 5 4 2 37 37 H 1.09005 * 109.46955 * 185.86909 * 7 6 5 38 38 H 1.09000 * 109.47699 * 65.86850 * 7 6 5 39 39 H 1.08001 * 119.94303 * 359.97438 * 9 8 7 40 40 H 1.08002 * 119.97539 * 179.72689 * 10 9 8 41 41 H 1.08000 * 120.02791 * 180.30246 * 11 10 9 42 42 H 1.09008 * 109.47127 * 299.99720 * 14 13 12 43 43 H 1.08999 * 109.47426 * 59.99662 * 14 13 12 44 44 H 1.08994 * 109.46950 * 299.99968 * 15 14 13 45 45 H 1.09002 * 109.46530 * 60.00297 * 15 14 13 46 46 H 0.97005 * 120.00507 * 179.97438 * 19 18 16 47 47 H 1.08007 * 120.02406 * 0.04908 * 24 8 7 48 48 H 1.09000 * 108.31258 * 28.50699 * 25 6 5 49 49 H 1.09004 * 108.31209 * 145.46775 * 25 6 5 50 50 H 1.08997 * 109.44467 * 184.53723 * 26 25 6 51 51 H 1.09005 * 109.44004 * 304.43032 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0231 -0.6906 -1.2833 5 6 3.4958 -1.1023 -1.2795 6 7 4.2891 -0.0400 -0.6782 7 6 5.4834 0.2458 -1.4843 8 6 6.2586 -1.0279 -1.7026 9 6 7.2349 -1.4060 -0.7991 10 6 7.9515 -2.5712 -0.9994 11 6 7.6857 -3.3669 -2.0972 12 6 6.7031 -2.9928 -3.0019 13 8 6.4401 -3.7734 -4.0828 14 6 7.2139 -4.9664 -4.2251 15 6 6.7785 -5.7089 -5.4900 16 6 7.5950 -6.9667 -5.6403 17 1 8.3493 -7.2117 -4.9072 18 6 7.3797 -7.8041 -6.7143 19 7 8.0925 -8.9013 -6.8458 20 14 6.0755 -7.3799 -7.9826 21 1 6.6825 -6.5597 -9.0615 22 1 5.5237 -8.6307 -8.5626 23 1 4.9835 -6.6122 -7.3320 24 6 5.9892 -1.8199 -2.8017 25 6 4.6593 -0.4618 0.6816 26 6 3.7533 -0.0279 1.7374 27 16 2.1099 -0.8093 1.5003 28 8 2.3003 -2.1904 1.2255 29 8 1.2661 -0.4253 2.5772 30 1 -0.3632 0.5394 0.8747 31 1 -0.3633 0.4879 -0.9044 32 1 -0.3633 -1.0272 0.0298 33 1 1.4184 -1.5827 -1.4462 34 1 1.8590 -0.0133 -2.1215 35 1 3.8293 -1.2707 -2.3034 36 1 3.6161 -2.0184 -0.7013 37 1 6.1106 0.9677 -0.9612 38 1 5.1818 0.6572 -2.4476 39 1 7.4410 -0.7877 0.0621 40 1 8.7165 -2.8621 -0.2947 41 1 8.2424 -4.2795 -2.2507 42 1 8.2701 -4.7076 -4.3007 43 1 7.0580 -5.6064 -3.3566 44 1 5.7224 -5.9678 -5.4139 45 1 6.9342 -5.0691 -6.3586 46 1 7.9408 -9.4907 -7.6011 47 1 5.2239 -1.5263 -3.5049 48 1 4.7107 -1.5504 0.7004 49 1 5.6533 -0.0727 0.9021 50 1 4.1580 -0.3212 2.7060 51 1 3.6479 1.0564 1.7021 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192050902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = -73.782727 kcal Electronic energy + Delta-G solvation = -31655.992029 eV Core-core repulsion = 27455.267666 eV Total energy + Delta-G solvation = -4200.724363 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.51930 -39.18131 -37.39667 -36.95343 -36.30214 -35.26025 -33.41361 -33.09594 -31.20110 -31.06292 -29.81602 -28.91630 -26.03174 -25.13610 -24.13331 -23.43122 -22.34005 -21.90857 -20.80794 -20.15456 -18.96291 -17.85142 -17.35459 -17.11478 -16.69938 -16.51554 -15.97803 -15.87942 -15.72477 -15.49992 -15.29089 -15.11999 -14.47849 -14.22856 -13.98110 -13.77175 -13.61976 -13.36252 -13.30578 -13.04530 -12.83850 -12.74249 -12.65092 -12.49091 -12.34606 -12.22763 -11.95269 -11.74290 -11.70348 -11.65075 -11.51508 -11.43785 -11.28311 -10.88540 -10.85914 -10.55506 -10.37363 -10.24519 -10.05860 -9.87062 -9.39496 -9.11511 -8.82255 -8.66254 -8.04272 -6.17215 -4.18550 -0.30787 1.22855 1.47643 2.37964 3.24093 3.25362 3.32967 3.36870 3.37852 3.61327 3.66962 3.80944 4.12306 4.19333 4.34552 4.35467 4.46565 4.55774 4.59995 4.69502 4.75364 4.89415 5.00660 5.03286 5.06549 5.16793 5.18748 5.26379 5.31679 5.33924 5.37523 5.41761 5.48287 5.51412 5.60677 5.62674 5.69895 5.78693 5.84674 5.86378 5.97227 6.28845 6.33616 6.39420 6.47026 6.50875 6.54812 6.74899 7.02661 7.17422 7.57450 7.80652 8.34375 8.83089 9.42793 10.95248 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002137 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.326928 B =13098.627508 C =14115.864825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.559 4.559 3 H 0.140 0.860 4 C -0.079 4.079 5 C 0.004 3.996 6 N -0.520 5.520 7 C 0.097 3.903 8 C -0.095 4.095 9 C -0.162 4.162 10 C -0.077 4.077 11 C -0.206 4.206 12 C 0.147 3.853 13 O -0.319 6.319 14 C 0.072 3.928 15 C -0.008 4.008 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.263 1.263 24 C -0.152 4.152 25 C 0.038 3.962 26 C -0.577 4.577 27 S 2.404 3.596 28 O -0.933 6.933 29 O -0.946 6.946 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.266 0.734 47 H 0.129 0.871 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.137 0.863 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 24.543 16.804 31.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.670 4.670 3 H 0.158 0.842 4 C -0.118 4.118 5 C -0.124 4.124 6 N -0.242 5.242 7 C -0.030 4.030 8 C -0.096 4.096 9 C -0.181 4.181 10 C -0.095 4.095 11 C -0.226 4.226 12 C 0.100 3.900 13 O -0.232 6.232 14 C -0.002 4.002 15 C -0.046 4.046 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.171 4.171 25 C -0.091 4.091 26 C -0.707 4.707 27 S 2.586 3.414 28 O -0.930 6.930 29 O -0.943 6.943 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.146 0.854 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.155 0.845 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.465 24.211 17.071 31.418 hybrid contribution 0.630 -0.176 -1.086 1.267 sum -9.835 24.034 15.985 30.494 Atomic orbital electron populations 1.21679 0.90182 1.03644 1.04608 1.29908 1.05938 1.14282 1.16826 0.84163 1.21254 0.95486 1.00638 0.94445 1.22876 0.92623 0.93658 1.03249 1.62746 1.19015 1.40755 1.01672 1.21342 0.89310 0.93412 0.98962 1.20256 0.97276 0.97364 0.94736 1.20827 0.98569 0.98445 1.00214 1.20922 0.98255 0.93937 0.96412 1.21455 1.01266 1.02746 0.97085 1.19154 0.92936 0.90884 0.87002 1.86127 1.60714 1.35519 1.40837 1.23107 0.94019 0.81890 1.01154 1.19584 0.98124 0.95296 0.91576 1.20824 1.20696 1.04307 1.10759 0.90763 1.24933 0.95866 0.94566 0.97627 1.69886 1.40272 1.12573 1.30737 0.86754 0.82611 0.78086 0.81796 1.20066 1.21133 1.18749 1.20319 1.02609 0.94531 0.99661 1.20647 0.99339 1.00893 0.88179 1.28886 1.20972 1.14212 1.06592 1.08700 0.78229 0.77111 0.77342 1.93585 1.85381 1.28910 1.85149 1.93570 1.64722 1.84632 1.51401 0.90467 0.90080 0.91525 0.90498 0.90294 0.88676 0.90140 0.89305 0.88938 0.86486 0.85996 0.84999 0.92494 0.92429 0.95376 0.95860 0.92402 0.85352 0.91310 0.89387 0.84499 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.75 37.16 0.33 -0.57 16 2 C -0.56 -3.60 2.51 -26.29 -0.07 -3.66 16 3 H 0.14 0.61 8.08 -51.73 -0.42 0.19 16 4 C -0.08 -0.57 4.96 -26.34 -0.13 -0.70 16 5 C 0.00 0.03 4.32 -4.58 -0.02 0.02 16 6 N -0.52 -3.65 4.34 -241.40 -1.05 -4.70 16 7 C 0.10 0.69 5.34 -4.98 -0.03 0.66 16 8 C -0.09 -0.95 4.34 -104.65 -0.45 -1.40 16 9 C -0.16 -1.61 8.76 -39.56 -0.35 -1.96 16 10 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 11 C -0.21 -2.95 9.04 -39.43 -0.36 -3.30 16 12 C 0.15 2.29 6.69 -39.22 -0.26 2.03 16 13 O -0.32 -5.94 10.14 -19.42 -0.20 -6.13 16 14 C 0.07 1.45 4.68 37.16 0.17 1.62 16 15 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 16 C -0.53 -14.70 9.66 -34.44 -0.33 -15.03 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 20 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 24 C -0.15 -1.92 8.15 -39.43 -0.32 -2.24 16 25 C 0.04 0.26 3.66 -7.15 -0.03 0.24 16 26 C -0.58 -3.19 6.21 33.72 0.21 -2.98 16 27 S 2.40 20.50 4.72 -107.50 -0.51 19.99 16 28 O -0.93 -11.33 15.51 -57.82 -0.90 -12.23 16 29 O -0.95 -10.77 17.30 -57.82 -1.00 -11.77 16 30 H 0.08 0.47 7.74 -51.93 -0.40 0.07 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.59 7.97 -51.93 -0.41 0.17 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.84 4.94 -51.93 -0.26 0.59 16 36 H 0.08 0.84 5.43 -51.93 -0.28 0.56 16 37 H 0.09 0.50 7.83 -51.93 -0.41 0.09 16 38 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.12 0.87 7.16 -52.49 -0.38 0.50 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.91 6.30 -52.49 -0.33 1.57 16 42 H 0.06 1.10 7.66 -51.92 -0.40 0.70 16 43 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 44 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 45 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.13 1.48 6.98 -52.48 -0.37 1.11 16 48 H 0.07 0.59 6.39 -51.93 -0.33 0.26 16 49 H 0.09 0.49 6.26 -51.93 -0.33 0.16 16 50 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -34.74 399.50 -11.79 -46.53 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.01 Total: -1.20 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -2.25 Total: -26.92 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: -0.27 Total: -30.96 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -2.09 Total: -30.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 20.50 SS G_CDS: -0.51 Total: 19.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.74 -11.79 -46.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192050902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.253 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds