Wall clock time and date at job start Tue Mar 31 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.43430 * 2 1 4 4 C 1.55234 * 109.43092 * 119.90900 * 2 1 3 5 5 C 1.45112 * 110.06271 * 192.31579 * 4 2 1 6 6 N 1.47016 * 115.49544 * 296.56170 * 5 4 2 7 7 C 1.46903 * 111.00208 * 216.78093 * 6 5 4 8 8 C 1.50694 * 109.46905 * 170.00276 * 7 6 5 9 9 C 1.38295 * 119.97281 * 269.72495 * 8 7 6 10 10 C 1.38241 * 120.10955 * 179.72819 * 9 8 7 11 11 C 1.38163 * 120.05662 * 0.55056 * 10 9 8 12 12 C 1.38702 * 119.94650 * 359.72698 * 11 10 9 13 13 O 1.35898 * 120.06028 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99717 * 0.02562 * 13 12 11 15 15 C 1.52999 * 109.47294 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47473 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99623 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99649 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00525 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47477 * 89.99791 * 20 18 16 22 22 H 1.48504 * 109.47341 * 210.00068 * 20 18 16 23 23 H 1.48503 * 109.46952 * 329.99638 * 20 18 16 24 24 C 1.38124 * 119.97485 * 90.00564 * 8 7 6 25 25 C 1.45429 * 105.31801 * 96.57457 * 6 5 4 26 26 C 1.54641 * 108.86670 * 252.45879 * 25 6 5 27 27 S 1.79280 * 109.43141 * 240.13573 * 2 1 3 28 28 O 1.42100 * 107.93046 * 267.86137 * 27 2 1 29 29 O 1.42097 * 107.93080 * 37.11864 * 27 2 1 30 30 H 1.09001 * 109.47288 * 300.09640 * 1 2 3 31 31 H 1.09000 * 109.47032 * 60.09084 * 1 2 3 32 32 H 1.08996 * 109.47193 * 180.09308 * 1 2 3 33 33 H 1.09006 * 109.37769 * 72.13176 * 4 2 1 34 34 H 1.09005 * 109.37333 * 312.49315 * 4 2 1 35 35 H 1.09004 * 108.27991 * 175.00514 * 5 4 2 36 36 H 1.08994 * 108.28077 * 58.12422 * 5 4 2 37 37 H 1.08999 * 109.47099 * 290.00543 * 7 6 5 38 38 H 1.08995 * 109.46544 * 50.00414 * 7 6 5 39 39 H 1.07996 * 119.94117 * 359.97438 * 9 8 7 40 40 H 1.08002 * 119.97220 * 180.24982 * 10 9 8 41 41 H 1.07999 * 120.02915 * 179.70006 * 11 10 9 42 42 H 1.09004 * 109.46876 * 299.99922 * 14 13 12 43 43 H 1.08999 * 109.47370 * 60.00048 * 14 13 12 44 44 H 1.08999 * 109.47350 * 300.00141 * 15 14 13 45 45 H 1.09000 * 109.47317 * 59.99363 * 15 14 13 46 46 H 0.97000 * 120.00129 * 180.02562 * 19 18 16 47 47 H 1.08005 * 120.02648 * 0.02562 * 24 8 7 48 48 H 1.08998 * 109.57497 * 12.26991 * 25 6 5 49 49 H 1.09004 * 109.57299 * 132.64400 * 25 6 5 50 50 H 1.09002 * 109.21871 * 278.63058 * 26 25 6 51 51 H 1.09000 * 109.22204 * 159.28790 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0464 -0.7299 1.2690 5 6 3.4679 -0.4911 1.4368 6 7 4.3286 -1.0174 0.3675 7 6 5.5935 -1.5279 0.9130 8 6 6.3390 -2.2752 -0.1624 9 6 6.1360 -3.6332 -0.3276 10 6 6.8142 -4.3205 -1.3169 11 6 7.7054 -3.6541 -2.1358 12 6 7.9152 -2.2933 -1.9684 13 8 8.7916 -1.6357 -2.7723 14 6 9.4624 -2.4084 -3.7698 15 6 10.4014 -1.5036 -4.5701 16 6 11.1092 -2.3186 -5.6216 17 1 10.9096 -3.3762 -5.7100 18 6 12.0116 -1.7139 -6.4708 19 7 12.6289 -2.4251 -7.3888 20 14 12.3573 0.1154 -6.3174 21 1 13.4822 0.3290 -5.3719 22 1 12.7191 0.6641 -7.6491 23 1 11.1455 0.8073 -5.8095 24 6 7.2290 -1.6046 -0.9785 25 6 4.5621 0.1062 -0.5258 26 6 3.7597 -0.1158 -1.8289 27 16 2.1264 -0.8419 -1.4662 28 8 2.3196 -2.2106 -1.1366 29 8 1.2554 -0.5184 -2.5412 30 1 -0.3634 0.5153 0.8891 31 1 -0.3633 0.5124 -0.8908 32 1 -0.3633 -1.0276 0.0017 33 1 1.8692 -1.8007 1.1676 34 1 1.5116 -0.3579 2.1429 35 1 3.7810 -0.9399 2.3796 36 1 3.6279 0.5848 1.5061 37 1 6.2010 -0.6936 1.2636 38 1 5.3851 -2.2004 1.7451 39 1 5.4435 -4.1567 0.3147 40 1 6.6510 -5.3802 -1.4466 41 1 8.2387 -4.1925 -2.9054 42 1 10.0408 -3.1979 -3.2898 43 1 8.7270 -2.8532 -4.4403 44 1 9.8234 -0.7138 -5.0500 45 1 11.1367 -1.0591 -3.8994 46 1 13.2641 -1.9998 -7.9860 47 1 7.3909 -0.5450 -0.8458 48 1 4.2327 1.0282 -0.0467 49 1 5.6250 0.1730 -0.7583 50 1 4.3148 -0.7893 -2.4818 51 1 3.6232 0.8406 -2.3336 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192050909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:44 Heat of formation + Delta-G solvation = -69.578926 kcal Electronic energy + Delta-G solvation = -31698.999638 eV Core-core repulsion = 27498.457566 eV Total energy + Delta-G solvation = -4200.542072 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.26545 -39.32990 -37.32919 -36.86955 -36.06590 -35.32947 -33.38047 -32.23478 -31.54468 -31.08251 -29.63863 -29.09410 -25.96303 -25.06413 -24.23278 -23.13145 -22.37599 -21.67919 -21.20786 -20.18517 -18.69896 -17.82417 -17.59815 -16.82726 -16.65749 -16.03534 -15.88471 -15.74799 -15.69997 -15.44934 -15.05011 -14.91740 -14.43494 -14.23624 -14.19623 -14.00882 -13.54886 -13.28087 -13.21323 -13.05506 -12.85429 -12.76542 -12.46130 -12.26066 -12.18292 -12.08892 -11.90943 -11.79457 -11.72105 -11.53547 -11.40923 -11.38773 -11.05784 -10.84545 -10.78931 -10.59954 -10.44551 -10.20854 -10.01669 -9.84184 -9.37020 -9.13011 -8.77669 -8.64659 -7.90673 -6.15641 -4.16658 -0.12790 1.35109 1.64836 2.71022 3.25875 3.27853 3.33309 3.38075 3.51200 3.60887 3.70741 3.98668 4.10275 4.13134 4.36499 4.36506 4.40047 4.48742 4.62027 4.73144 4.86160 4.92366 4.94176 5.06118 5.12089 5.18218 5.18513 5.21015 5.23029 5.28455 5.34912 5.36371 5.45049 5.50211 5.57676 5.58316 5.67179 5.75854 5.89550 5.93543 6.10182 6.32620 6.38949 6.40973 6.51576 6.62343 6.68603 6.86848 7.08273 7.19760 7.59959 7.88610 8.36529 8.85165 9.44404 10.96870 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.002149 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.037890 B =13028.037058 C =13707.737283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.593 4.593 3 H 0.128 0.872 4 C -0.090 4.090 5 C 0.020 3.980 6 N -0.520 5.520 7 C 0.100 3.900 8 C -0.051 4.051 9 C -0.138 4.138 10 C -0.080 4.080 11 C -0.207 4.207 12 C 0.141 3.859 13 O -0.321 6.321 14 C 0.073 3.927 15 C -0.008 4.008 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.159 4.159 25 C 0.044 3.956 26 C -0.596 4.596 27 S 2.439 3.561 28 O -0.914 6.914 29 O -0.958 6.958 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.023 0.977 46 H 0.266 0.734 47 H 0.123 0.877 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.138 0.862 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.262 6.029 22.953 33.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.701 4.701 3 H 0.147 0.853 4 C -0.128 4.128 5 C -0.107 4.107 6 N -0.244 5.244 7 C -0.026 4.026 8 C -0.052 4.052 9 C -0.157 4.157 10 C -0.098 4.098 11 C -0.226 4.226 12 C 0.094 3.906 13 O -0.235 6.235 14 C -0.001 4.001 15 C -0.046 4.046 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.178 4.178 25 C -0.085 4.085 26 C -0.726 4.726 27 S 2.619 3.381 28 O -0.911 6.911 29 O -0.955 6.955 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.141 0.859 48 H 0.089 0.911 49 H 0.111 0.889 50 H 0.156 0.844 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.720 5.193 22.085 32.823 hybrid contribution 1.221 1.987 0.442 2.374 sum -22.499 7.180 22.527 32.638 Atomic orbital electron populations 1.21529 0.89690 1.03725 1.04320 1.30468 1.07096 1.13567 1.18998 0.85348 1.20325 0.94838 1.02525 0.95158 1.21223 0.94304 0.99383 0.95811 1.63148 1.15424 1.29846 1.15969 1.21157 0.88068 0.98148 0.95234 1.19267 0.95679 0.93911 0.96341 1.20801 1.01104 0.93709 1.00049 1.20939 0.94895 0.99699 0.94262 1.21433 1.03471 0.94065 1.03625 1.19071 0.89919 0.90837 0.90738 1.86103 1.53113 1.39178 1.45103 1.23077 0.94457 0.95227 0.87384 1.19579 0.94005 0.96094 0.94895 1.20836 1.23806 0.96977 1.14870 0.90729 1.24941 0.95163 0.98314 0.94642 1.69895 1.27652 1.36283 1.19652 0.86749 0.79272 0.85624 0.77546 1.20085 1.21158 1.18816 1.20237 1.00352 0.99782 0.97415 1.22498 1.02357 0.92463 0.91230 1.30741 1.21545 1.13643 1.06632 1.07556 0.77065 0.77245 0.76229 1.93545 1.85141 1.28836 1.83574 1.93545 1.63851 1.85661 1.52418 0.90477 0.90451 0.91369 0.88390 0.89135 0.90155 0.92736 0.92843 0.89000 0.86004 0.85952 0.85123 0.92517 0.92483 0.95481 0.95904 0.92432 0.85900 0.91058 0.88890 0.84370 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 8.88 37.16 0.33 -0.44 16 2 C -0.59 -3.47 2.58 -25.55 -0.07 -3.53 16 3 H 0.13 0.42 7.80 -51.75 -0.40 0.02 16 4 C -0.09 -0.46 4.87 -29.25 -0.14 -0.60 16 5 C 0.02 0.10 4.75 -7.46 -0.04 0.06 16 6 N -0.52 -4.02 3.27 -240.80 -0.79 -4.81 16 7 C 0.10 0.80 4.79 -4.98 -0.02 0.78 16 8 C -0.05 -0.59 5.16 -104.65 -0.54 -1.13 16 9 C -0.14 -1.66 9.70 -39.56 -0.38 -2.04 16 10 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 11 C -0.21 -3.16 9.04 -39.44 -0.36 -3.51 16 12 C 0.14 2.30 6.69 -39.22 -0.26 2.04 16 13 O -0.32 -6.14 10.14 -19.42 -0.20 -6.34 16 14 C 0.07 1.48 4.68 37.16 0.17 1.66 16 15 C -0.01 -0.20 4.41 -27.88 -0.12 -0.32 16 16 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 24 C -0.16 -2.13 8.57 -39.43 -0.34 -2.47 16 25 C 0.04 0.32 5.04 -3.76 -0.02 0.30 16 26 C -0.60 -5.03 6.72 38.02 0.26 -4.78 16 27 S 2.44 23.90 4.50 -107.50 -0.48 23.42 16 28 O -0.91 -11.93 15.90 -57.93 -0.92 -12.85 16 29 O -0.96 -12.63 17.18 -57.93 -1.00 -13.62 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.48 7.71 -51.93 -0.40 0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.65 7.23 -51.93 -0.38 0.28 16 34 H 0.09 0.28 8.10 -51.93 -0.42 -0.14 16 35 H 0.08 0.31 7.37 -51.93 -0.38 -0.08 16 36 H 0.05 0.18 6.49 -51.93 -0.34 -0.16 16 37 H 0.05 0.35 7.95 -51.93 -0.41 -0.06 16 38 H 0.09 0.60 7.71 -51.93 -0.40 0.20 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 42 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 43 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 44 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 45 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.12 1.47 6.92 -52.48 -0.36 1.11 16 48 H 0.07 0.30 6.26 -51.93 -0.33 -0.02 16 49 H 0.09 0.75 5.09 -51.93 -0.26 0.49 16 50 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 51 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -35.98 404.23 -11.65 -47.63 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.10 Total: -1.30 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -2.36 Total: -28.60 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: -0.01 Total: -31.22 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -2.11 Total: -32.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 23.90 SS G_CDS: -0.48 Total: 23.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.98 -11.65 -47.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192050909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.952 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds