Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48501 * 109.46827 * 269.99882 * 3 2 1 5 5 H 1.48496 * 109.47295 * 30.00002 * 3 2 1 6 6 H 1.48500 * 109.47075 * 150.00286 * 3 2 1 7 7 C 1.38801 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99656 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99767 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46900 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99585 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.62730 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 126.46248 * 14 13 11 16 16 C 1.53044 * 109.31440 * 54.56430 * 15 14 13 17 17 C 1.50698 * 109.45870 * 178.61110 * 16 15 14 18 18 O 1.21262 * 120.00233 * 30.00370 * 17 16 15 19 19 C 1.47091 * 119.99908 * 209.99400 * 17 16 15 20 20 C 1.39899 * 120.15778 * 359.72970 * 19 17 16 21 21 C 1.37816 * 119.83805 * 179.80716 * 20 19 17 22 22 C 1.38570 * 120.15646 * 0.44530 * 21 20 19 23 23 Cl 1.73600 * 119.83629 * 179.76339 * 22 21 20 24 24 C 1.38561 * 120.31957 * 359.78270 * 22 21 20 25 25 C 1.37813 * 120.16338 * 0.02562 * 24 22 21 26 26 C 1.53040 * 109.53662 * 298.63203 * 16 15 14 27 27 C 1.46957 * 120.65462 * 359.81587 * 13 11 10 28 28 H 0.96997 * 120.00099 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47002 * 59.99921 * 10 9 7 30 30 H 1.08999 * 109.46823 * 300.00269 * 10 9 7 31 31 H 1.09002 * 109.58861 * 6.60251 * 14 13 11 32 32 H 1.08996 * 109.58519 * 246.32142 * 14 13 11 33 33 H 1.09003 * 109.49294 * 174.51508 * 15 14 13 34 34 H 1.08997 * 109.50161 * 294.61021 * 15 14 13 35 35 H 1.08996 * 109.46025 * 58.63894 * 16 15 14 36 36 H 1.08006 * 120.07774 * 0.02562 * 20 19 17 37 37 H 1.07994 * 119.91854 * 180.18708 * 21 20 19 38 38 H 1.08004 * 119.91581 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.08361 * 179.97438 * 25 24 22 40 40 H 1.08995 * 109.49643 * 181.31582 * 26 16 15 41 41 H 1.08994 * 109.49843 * 301.38341 * 26 16 15 42 42 H 1.09001 * 109.46843 * 113.75468 * 27 13 11 43 43 H 1.09002 * 109.71597 * 353.46502 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8442 -6.3431 0.0039 14 6 2.3441 -7.7246 0.0039 15 6 2.9855 -8.4843 -1.1615 16 6 4.5084 -8.3673 -1.0651 17 6 5.1437 -9.1420 -2.1908 18 8 4.5613 -9.2639 -3.2474 19 6 6.4705 -9.7501 -2.0080 20 6 7.1480 -9.6067 -0.7924 21 6 8.3890 -10.1826 -0.6269 22 6 8.9699 -10.8946 -1.6641 23 17 10.5363 -11.6114 -1.4487 24 6 8.3068 -11.0368 -2.8724 25 6 7.0635 -10.4696 -3.0509 26 6 4.9159 -6.8955 -1.1653 27 6 4.2964 -6.1178 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7305 0.8928 30 1 3.1245 -3.7321 -0.8872 31 1 1.2605 -7.7211 -0.1144 32 1 2.6073 -8.2085 0.9445 33 1 2.6975 -9.5345 -1.1135 34 1 2.6468 -8.0565 -2.1051 35 1 4.8440 -8.7726 -0.1106 36 1 6.6979 -9.0489 0.0156 37 1 8.9118 -10.0752 0.3119 38 1 8.7659 -11.5927 -3.6766 39 1 6.5480 -10.5809 -3.9934 40 1 6.0020 -6.8149 -1.1201 41 1 4.5595 -6.4828 -2.1090 42 1 4.7213 -6.4689 0.9399 43 1 4.5031 -5.0543 -0.1204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193434354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = -58.039394 kcal Electronic energy + Delta-G solvation = -27017.474086 eV Core-core repulsion = 22986.475380 eV Total energy + Delta-G solvation = -4030.998705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 367.080 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97888 -39.75450 -38.84745 -37.04068 -36.93412 -33.38046 -32.43720 -31.97540 -31.67453 -31.27011 -29.10397 -26.53082 -25.48818 -24.16834 -23.47289 -23.32338 -21.57866 -20.10030 -19.07095 -18.09498 -17.73955 -16.93347 -16.55649 -16.21453 -15.69503 -15.42061 -15.27661 -15.11609 -14.82433 -14.80830 -14.37360 -14.17032 -14.04208 -13.94544 -13.65374 -13.20154 -12.97387 -12.86802 -12.69649 -12.48005 -12.29448 -12.04930 -12.02119 -11.86325 -11.49052 -11.45285 -11.07735 -11.05125 -11.01619 -10.93180 -10.76178 -10.00977 -9.81432 -9.74914 -9.39059 -9.36792 -9.07537 -8.58336 -8.23527 -6.51113 -6.22393 -3.93155 -0.06746 0.64093 1.46342 1.81645 2.89491 3.01756 3.07307 3.21580 3.24692 3.29320 3.42772 3.57750 4.05993 4.19042 4.20088 4.27043 4.41623 4.53311 4.58289 4.68173 4.78024 4.87061 4.95938 5.02421 5.06004 5.12730 5.21125 5.26936 5.34330 5.41906 5.45383 5.51788 5.53413 5.55369 5.60409 5.70164 5.78776 5.84793 5.91608 6.03706 6.05046 6.09045 6.59412 7.06704 7.51161 7.58617 8.34115 8.53417 9.22813 10.84987 Molecular weight = 367.08amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.001727 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.319749 B =16205.795944 C =17278.733310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.515 6.515 13 N -0.621 5.621 14 C 0.114 3.886 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.402 3.598 18 O -0.440 6.440 19 C -0.163 4.163 20 C -0.060 4.060 21 C -0.123 4.123 22 C -0.008 4.008 23 Cl -0.063 7.063 24 C -0.123 4.123 25 C -0.050 4.050 26 C -0.124 4.124 27 C 0.111 3.889 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.846 -24.955 -1.344 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.389 6.389 13 N -0.358 5.358 14 C -0.008 4.008 15 C -0.160 4.160 16 C -0.149 4.149 17 C 0.278 3.722 18 O -0.314 6.314 19 C -0.164 4.164 20 C -0.078 4.078 21 C -0.141 4.141 22 C -0.035 4.035 23 Cl -0.033 7.033 24 C -0.142 4.142 25 C -0.068 4.068 26 C -0.163 4.163 27 C -0.012 4.012 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.708 -25.258 -1.879 31.488 hybrid contribution 2.417 1.112 0.047 2.661 sum 21.125 -24.146 -1.832 32.135 Atomic orbital electron populations 1.70016 1.05947 1.27460 1.46792 1.24993 0.95026 0.99020 0.94541 0.86174 0.79405 0.81599 0.78355 1.20273 1.20750 1.19696 1.22852 0.94869 0.91627 1.59009 0.90944 1.85429 1.04954 0.96345 1.96694 1.23560 1.06526 0.95414 1.04677 1.20341 0.86213 0.86198 0.74881 1.90694 1.15191 1.85192 1.47832 1.48119 1.06198 1.05838 1.75662 1.21493 1.01006 0.81161 0.97186 1.21853 0.92369 1.01144 1.00640 1.21671 0.97586 0.96879 0.98755 1.22473 0.84630 0.76744 0.88365 1.90550 1.62440 1.50460 1.27910 1.20704 0.97470 1.02649 0.95577 1.21516 0.93421 0.96268 0.96582 1.21090 0.95952 0.98193 0.98898 1.21311 0.88160 0.98127 0.95853 1.98403 1.25628 1.82013 1.97299 1.21082 0.95214 1.01375 0.96502 1.21433 0.93550 0.92939 0.98891 1.21884 1.01135 0.92412 1.00841 1.21667 0.80268 1.01660 0.97627 0.92174 0.89230 0.89266 0.88443 0.91689 0.90549 0.90137 0.88282 0.83724 0.84066 0.84205 0.83860 0.90040 0.90341 0.91156 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.00 4.51 36.01 0.16 -2.84 16 11 C 0.54 9.95 7.72 -10.98 -0.08 9.86 16 12 O -0.52 -11.64 15.27 5.56 0.08 -11.56 16 13 N -0.62 -8.26 2.98 -172.77 -0.51 -8.77 16 14 C 0.11 1.28 6.43 -3.71 -0.02 1.26 16 15 C -0.12 -1.17 4.93 -26.61 -0.13 -1.30 16 16 C -0.13 -0.98 1.92 -91.73 -0.18 -1.15 16 17 C 0.40 3.50 6.17 -30.72 -0.19 3.31 16 18 O -0.44 -5.30 16.20 5.57 0.09 -5.21 16 19 C -0.16 -1.15 5.87 -105.06 -0.62 -1.77 16 20 C -0.06 -0.31 9.36 -39.11 -0.37 -0.67 16 21 C -0.12 -0.64 9.81 -39.61 -0.39 -1.02 16 22 C -0.01 -0.05 6.33 -39.34 -0.25 -0.30 16 23 Cl -0.06 -0.37 28.95 -51.86 -1.50 -1.88 16 24 C -0.12 -0.74 9.81 -39.62 -0.39 -1.13 16 25 C -0.05 -0.35 9.60 -39.12 -0.38 -0.72 16 26 C -0.12 -0.99 5.34 -26.63 -0.14 -1.13 16 27 C 0.11 1.04 6.33 -3.71 -0.02 1.02 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.62 7.95 -51.91 -0.41 1.21 16 30 H 0.09 1.64 7.69 -51.92 -0.40 1.24 16 31 H 0.10 1.31 7.01 -51.93 -0.36 0.95 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.97 7.91 -51.93 -0.41 0.56 16 35 H 0.10 0.49 6.48 -51.93 -0.34 0.16 16 36 H 0.15 0.42 6.36 -52.48 -0.33 0.09 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.14 0.97 7.65 -52.49 -0.40 0.57 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.94 5.95 -51.93 -0.31 0.63 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -35.55 387.10 -10.77 -46.33 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.47 Total: -2.42 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.79 Total: -9.38 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.22 Total: -34.07 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.18 Total: -16.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.55 -10.77 -46.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193434354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.711 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds