Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40472 * 120.14932 * 2 1 4 4 C 1.34946 * 120.30376 * 180.02562 * 3 2 1 5 5 N 1.36523 * 120.63065 * 359.96206 * 4 3 2 6 6 C 1.36705 * 132.37235 * 180.02562 * 5 4 3 7 7 C 1.36233 * 107.08088 * 180.02562 * 6 5 4 8 8 C 1.48383 * 125.85532 * 179.97438 * 7 6 5 9 9 C 1.39373 * 120.05349 * 180.02562 * 8 7 6 10 10 C 1.37887 * 119.95072 * 180.02562 * 9 8 7 11 11 C 1.38956 * 120.04749 * 0.02562 * 10 9 8 12 12 N 1.39880 * 119.94590 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99964 * 146.77343 * 12 11 10 14 14 O 1.21294 * 119.99472 * 354.58741 * 13 12 11 15 15 C 1.50696 * 120.00498 * 174.58773 * 13 12 11 16 16 S 1.80991 * 109.47560 * 179.97438 * 15 13 12 17 17 C 1.76204 * 100.00388 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99600 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00363 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99660 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47278 * 59.99870 * 21 19 17 23 23 H 1.48502 * 109.47227 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47309 * 299.99773 * 21 19 17 25 25 C 1.38956 * 120.10543 * 0.25008 * 11 10 9 26 26 C 1.37887 * 120.04877 * 359.49504 * 25 11 10 27 27 N 1.34245 * 108.29537 * 0.23180 * 7 6 5 28 28 C 1.32486 * 109.11331 * 359.62162 * 27 7 6 29 29 C 1.36011 * 120.15386 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46801 * 269.97350 * 1 2 3 31 31 H 1.08997 * 109.47377 * 29.97311 * 1 2 3 32 32 H 1.08998 * 109.46866 * 149.97833 * 1 2 3 33 33 H 1.08007 * 119.84419 * 0.05029 * 3 2 1 34 34 H 1.07998 * 119.68555 * 180.02562 * 4 3 2 35 35 H 1.08008 * 126.45634 * 0.03321 * 6 5 4 36 36 H 1.07998 * 120.02914 * 0.04730 * 9 8 7 37 37 H 1.08002 * 119.97245 * 179.97438 * 10 9 8 38 38 H 0.96992 * 120.00360 * 326.49683 * 12 11 10 39 39 H 1.08998 * 109.46896 * 300.00120 * 15 13 12 40 40 H 1.09006 * 109.46789 * 59.99774 * 15 13 12 41 41 H 0.96999 * 119.99603 * 179.97438 * 20 19 17 42 42 H 1.07995 * 119.98209 * 179.72044 * 25 11 10 43 43 H 1.08000 * 120.02945 * 180.25838 * 26 25 11 44 44 H 1.08007 * 120.32442 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2147 0.0000 4 6 3.5620 1.2183 -0.0005 5 7 4.2608 0.0455 -0.0003 6 6 5.6000 -0.2291 -0.0002 7 6 5.7304 -1.5852 -0.0005 8 6 7.0107 -2.3352 -0.0011 9 6 7.0032 -3.7289 -0.0019 10 6 8.1942 -4.4237 -0.0019 11 6 9.4013 -3.7354 -0.0006 12 7 10.6083 -4.4424 -0.0001 13 6 11.6838 -3.9402 -0.6386 14 8 11.5801 -2.9256 -1.2952 15 6 13.0150 -4.6390 -0.5367 16 16 14.2498 -3.7280 -1.4965 17 6 15.6657 -4.7367 -1.2096 18 1 15.5843 -5.6181 -0.5907 19 6 16.8858 -4.3981 -1.7779 20 7 16.9851 -3.3235 -2.5318 21 14 18.3870 -5.4670 -1.4731 22 1 18.1267 -6.8405 -1.9742 23 1 19.5562 -4.8936 -2.1867 24 1 18.6714 -5.5172 -0.0164 25 6 9.4113 -2.3459 0.0060 26 6 8.2228 -1.6469 0.0007 27 7 4.5020 -2.1267 -0.0059 28 6 3.6001 -1.1562 -0.0008 29 6 2.1902 -1.1761 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6724 2.1500 0.0008 34 1 4.0943 2.1580 -0.0001 35 1 6.4032 0.4930 0.0001 36 1 6.0653 -4.2644 -0.0029 37 1 8.1888 -5.5038 -0.0021 38 1 10.6724 -5.2922 0.4631 39 1 13.3245 -4.6806 0.5076 40 1 12.9247 -5.6517 -0.9295 41 1 17.8378 -3.0867 -2.9287 42 1 10.3506 -1.8130 0.0115 43 1 8.2310 -0.5669 0.0016 44 1 1.6580 -2.1159 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194267316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = 77.468649 kcal Electronic energy + Delta-G solvation = -27353.733299 eV Core-core repulsion = 23363.336264 eV Total energy + Delta-G solvation = -3990.397035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.06654 -40.27869 -38.63047 -37.76344 -34.86568 -34.35442 -32.45925 -31.72531 -31.04830 -30.31682 -29.98708 -28.47116 -26.70916 -25.51777 -24.02948 -23.15673 -23.00626 -21.77663 -20.82135 -20.12069 -18.34917 -17.98485 -17.42291 -17.16362 -16.47489 -16.23865 -16.04184 -15.34072 -15.20671 -14.98894 -14.83009 -14.61504 -14.31520 -14.16033 -14.01412 -13.75860 -13.36246 -13.31150 -13.09766 -13.01737 -12.65509 -12.54943 -12.25869 -12.12859 -12.00485 -11.84869 -11.25938 -11.07591 -11.05672 -11.03993 -10.80334 -10.41890 -10.31259 -9.87171 -9.54986 -9.19975 -9.08450 -8.90660 -8.30388 -8.21881 -7.68998 -6.54840 -6.24646 -3.96184 0.25972 0.79708 1.19766 1.45819 2.23470 2.59152 2.91287 2.96079 3.19184 3.22208 3.25765 3.28606 3.60510 3.73319 3.97605 3.98624 4.17168 4.24026 4.30814 4.61617 4.72340 4.78576 4.93571 4.97144 5.02248 5.05588 5.10688 5.10867 5.13835 5.29052 5.35682 5.43889 5.49669 5.62735 5.64137 5.66441 5.79329 5.84458 5.97277 6.05932 6.08929 6.13197 6.37556 6.44088 6.48290 6.57028 6.76997 7.05517 7.50571 7.56675 7.58488 8.31920 8.39739 9.20701 10.82732 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.036821 B = 0.001348 C = 0.001311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.258350 B =20760.050329 C =21359.297067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.143 4.143 4 C 0.062 3.938 5 N -0.363 5.363 6 C -0.089 4.089 7 C 0.114 3.886 8 C -0.043 4.043 9 C -0.066 4.066 10 C -0.154 4.154 11 C 0.168 3.832 12 N -0.681 5.681 13 C 0.531 3.469 14 O -0.495 6.495 15 C -0.155 4.155 16 S -0.056 6.056 17 C -0.538 4.538 18 H 0.073 0.927 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.123 4.123 26 C -0.079 4.079 27 N -0.485 5.485 28 C 0.230 3.770 29 C -0.085 4.085 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.410 0.590 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.269 0.731 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.858 6.782 8.476 34.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.164 4.164 4 C -0.060 4.060 5 N -0.035 5.035 6 C -0.220 4.220 7 C -0.017 4.017 8 C -0.046 4.046 9 C -0.085 4.085 10 C -0.174 4.174 11 C 0.073 3.927 12 N -0.328 5.328 13 C 0.319 3.681 14 O -0.367 6.367 15 C -0.305 4.305 16 S 0.170 5.830 17 C -0.686 4.686 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.143 4.143 26 C -0.099 4.099 27 N -0.205 5.205 28 C -0.014 4.014 29 C -0.105 4.105 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.182 0.818 35 H 0.203 0.797 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.246 0.754 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -32.922 7.769 7.249 34.594 hybrid contribution 1.421 -1.348 1.125 2.258 sum -31.500 6.421 8.374 33.221 Atomic orbital electron populations 1.20769 0.89657 1.03436 1.02895 1.19742 0.97018 0.92008 0.98912 1.20714 0.92106 0.99300 1.04307 1.21633 0.93067 0.88832 1.02511 1.42744 1.07353 1.07528 1.45923 1.22592 0.83348 0.98134 1.17915 1.19239 0.91588 0.89388 1.01467 1.17717 0.88850 0.92649 1.05334 1.20932 0.97764 0.92859 0.96952 1.20838 0.90842 0.99958 1.05774 1.17906 0.85381 0.91585 0.97859 1.43737 1.09333 1.24891 1.54792 1.20543 0.84875 0.85018 0.77692 1.90724 1.84266 1.23942 1.37730 1.23553 0.96023 1.04381 1.06556 1.85407 0.99908 1.34857 1.62819 1.22821 0.95223 1.13490 1.37054 0.90877 1.24985 0.98534 0.95521 0.94430 1.70006 1.26122 1.23823 1.30298 0.86216 0.80645 0.80032 0.78571 1.19903 1.20783 1.19903 1.21109 0.99174 0.92633 1.01434 1.20916 0.90673 0.99657 0.98646 1.70776 0.98141 1.28636 1.22966 1.20908 0.94335 0.80323 1.05848 1.20109 0.88156 0.99606 1.02676 0.90566 0.90991 0.90925 0.83223 0.81842 0.79700 0.84933 0.85433 0.75411 0.88708 0.88824 0.92075 0.84095 0.85667 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.33 10.02 36.01 0.36 0.03 16 2 C -0.07 -0.41 5.88 -104.58 -0.62 -1.03 16 3 C -0.14 -0.72 9.67 -39.91 -0.39 -1.10 16 4 C 0.06 0.39 10.94 -16.63 -0.18 0.21 16 5 N -0.36 -3.56 2.94 -62.37 -0.18 -3.75 16 6 C -0.09 -0.93 11.11 -16.10 -0.18 -1.11 16 7 C 0.11 1.46 6.84 -83.36 -0.57 0.89 16 8 C -0.04 -0.56 5.88 -104.87 -0.62 -1.18 16 9 C -0.07 -0.82 9.68 -39.29 -0.38 -1.20 16 10 C -0.15 -1.86 9.95 -39.44 -0.39 -2.25 16 11 C 0.17 2.37 6.28 -83.65 -0.53 1.84 16 12 N -0.68 -9.44 5.34 -9.83 -0.05 -9.50 16 13 C 0.53 9.69 7.58 -10.99 -0.08 9.61 16 14 O -0.49 -10.82 13.56 5.55 0.08 -10.74 16 15 C -0.15 -3.01 6.16 36.00 0.22 -2.78 16 16 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 17 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 21 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.12 -1.81 8.64 -39.44 -0.34 -2.15 16 26 C -0.08 -1.00 9.55 -39.28 -0.38 -1.38 16 27 N -0.49 -6.54 10.97 -9.29 -0.10 -6.64 16 28 C 0.23 2.60 7.80 -156.03 -1.22 1.38 16 29 C -0.09 -0.70 9.75 -39.34 -0.38 -1.08 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.14 8.09 -51.93 -0.42 -0.29 16 32 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 33 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 34 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.19 1.38 7.25 -52.48 -0.38 1.00 16 36 H 0.13 1.56 7.84 -52.49 -0.41 1.15 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.41 4.21 8.82 -40.82 -0.36 3.85 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.14 2.30 6.42 -52.49 -0.34 1.97 16 43 H 0.13 1.27 6.97 -52.49 -0.37 0.90 16 44 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -36.88 394.43 -11.48 -48.36 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.20 Total: 3.12 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -5.46 Total: -14.09 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.40 Total: -45.03 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.88 -11.48 -48.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194267316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.833 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds