Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30874 * 125.88051 * 2 1 4 4 N 1.40087 * 108.22043 * 179.73664 * 3 2 1 5 5 C 1.40186 * 126.05324 * 179.97438 * 4 3 2 6 6 C 1.38829 * 120.06371 * 144.74765 * 5 4 3 7 7 C 1.38130 * 119.93093 * 179.74809 * 6 5 4 8 8 C 1.38276 * 120.06110 * 0.52749 * 7 6 5 9 9 C 1.38279 * 120.13723 * 359.74824 * 8 7 6 10 10 C 1.38114 * 120.06645 * 359.97438 * 9 8 7 11 11 C 1.35225 * 107.89151 * 0.02562 * 4 3 2 12 12 C 1.50701 * 126.14352 * 179.97438 * 11 4 3 13 13 C 1.35315 * 107.71556 * 359.97438 * 11 4 3 14 14 C 1.50704 * 126.03571 * 180.02562 * 13 11 4 15 15 H 1.08996 * 109.47171 * 344.97569 * 14 13 11 16 16 N 1.46497 * 109.47063 * 224.97282 * 14 13 11 17 17 C 1.34782 * 119.99754 * 155.00130 * 16 14 13 18 18 O 1.21697 * 119.99905 * 359.97438 * 17 16 14 19 19 C 1.46370 * 120.00253 * 180.02562 * 17 16 14 20 20 H 1.08003 * 119.99916 * 359.97438 * 19 17 16 21 21 C 1.40044 * 120.00455 * 179.97438 * 19 17 16 22 22 N 1.30674 * 119.99873 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 120.00290 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47272 * 60.00162 * 23 21 19 25 25 H 1.48503 * 109.46853 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47184 * 299.99702 * 23 21 19 27 27 C 1.52998 * 109.46970 * 104.97585 * 14 13 11 28 28 F 1.39902 * 109.47263 * 60.00062 * 27 14 13 29 29 F 1.39901 * 109.47414 * 180.02562 * 27 14 13 30 30 F 1.39905 * 109.47164 * 300.00371 * 27 14 13 31 31 H 1.09005 * 109.46954 * 90.02580 * 1 2 3 32 32 H 1.09000 * 109.47411 * 210.02098 * 1 2 3 33 33 H 1.08999 * 109.47301 * 330.02786 * 1 2 3 34 34 H 1.07996 * 120.03865 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.96635 * 180.29733 * 7 6 5 36 36 H 1.08005 * 119.93358 * 179.76461 * 8 7 6 37 37 H 1.08002 * 119.96581 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.03585 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.46800 * 90.01991 * 12 11 4 40 40 H 1.08991 * 109.47507 * 210.02229 * 12 11 4 41 41 H 1.09000 * 109.46837 * 330.02512 * 12 11 4 42 42 H 0.96994 * 120.00870 * 335.00545 * 16 14 13 43 43 H 0.96997 * 120.00039 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0604 0.0000 4 7 3.6089 0.6354 0.0061 5 6 4.7388 1.4651 0.0076 6 6 5.8776 1.0880 0.7063 7 6 6.9913 1.9051 0.7017 8 6 6.9688 3.1027 0.0109 9 6 5.8340 3.4837 -0.6813 10 6 4.7193 2.6682 -0.6850 11 6 3.6143 -0.7168 0.0092 12 6 4.8349 -1.6007 0.0154 13 6 2.3270 -1.1338 0.0058 14 6 1.8591 -2.5663 0.0080 15 1 2.6907 -3.2206 -0.2537 16 7 0.7821 -2.7298 -0.9716 17 6 0.5459 -3.9390 -1.5180 18 8 1.2276 -4.8950 -1.1979 19 6 -0.5297 -4.1023 -2.4971 20 1 -1.1344 -3.2539 -2.7815 21 6 -0.7748 -5.3587 -3.0653 22 7 -0.0435 -6.3854 -2.7208 23 14 -2.1480 -5.5672 -4.3143 24 1 -1.8911 -4.6887 -5.4837 25 1 -2.2009 -6.9827 -4.7601 26 1 -3.4441 -5.1961 -3.6917 27 6 1.3415 -2.9316 1.4006 28 9 0.2741 -2.0918 1.7365 29 9 0.9076 -4.2616 1.4029 30 9 2.3699 -2.7754 2.3362 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8898 0.5141 33 1 -0.3634 0.8902 0.5134 34 1 5.8941 0.1550 1.2500 35 1 7.8792 1.6100 1.2411 36 1 7.8395 3.7418 0.0117 37 1 5.8193 4.4199 -1.2196 38 1 3.8334 2.9660 -1.2262 39 1 5.1254 -1.8118 1.0446 40 1 4.6091 -2.5356 -0.4974 41 1 5.6530 -1.0940 -0.4964 42 1 0.2390 -1.9678 -1.2271 43 1 -0.2130 -7.2555 -3.1146 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195567594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -82.816785 kcal Electronic energy + Delta-G solvation = -34245.507398 eV Core-core repulsion = 29263.550254 eV Total energy + Delta-G solvation = -4981.957144 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.44769 -47.06166 -46.79439 -41.82503 -39.29979 -37.55480 -34.80807 -33.83131 -32.57149 -32.09007 -31.24399 -30.21343 -29.06504 -27.32118 -26.64881 -25.86859 -23.41419 -22.88291 -22.23572 -20.23857 -19.87452 -19.45552 -17.97432 -17.84027 -17.69286 -17.26924 -16.94571 -16.41387 -15.78843 -15.43722 -14.88323 -14.78751 -14.49003 -14.20207 -13.95493 -13.90039 -13.72481 -13.68708 -13.49773 -13.42325 -13.23103 -13.10123 -13.04659 -12.96479 -12.59041 -12.58175 -12.46972 -12.18311 -12.03601 -11.84605 -11.69057 -11.38682 -11.31697 -11.22497 -10.96298 -10.54929 -10.44869 -10.31184 -9.92744 -9.34962 -8.91377 -8.88085 -8.23619 -7.90866 -7.72891 -6.26045 -4.72399 0.65351 0.98776 1.89663 2.25328 2.54790 3.13707 3.18917 3.20385 3.39317 3.43638 4.01360 4.23507 4.36117 4.44363 4.49160 4.55052 4.58173 4.68487 4.74216 4.79835 4.93240 5.01259 5.06186 5.16134 5.27416 5.31847 5.38094 5.43496 5.61158 5.64235 5.76277 5.77540 5.80447 5.86527 5.98020 6.10105 6.11743 6.16143 6.19819 6.43519 6.63695 7.08189 7.36959 7.61218 7.65202 7.85110 8.20727 8.94909 9.30907 10.47821 10.66488 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.002909 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.216641 B = 9623.452867 C =10210.831684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.115 3.885 3 N -0.291 5.291 4 N -0.328 5.328 5 C 0.162 3.838 6 C -0.134 4.134 7 C -0.099 4.099 8 C -0.127 4.127 9 C -0.101 4.101 10 C -0.112 4.112 11 C 0.120 3.880 12 C -0.105 4.105 13 C -0.243 4.243 14 C 0.203 3.797 15 H 0.121 0.879 16 N -0.748 5.748 17 C 0.551 3.449 18 O -0.564 6.564 19 C -0.539 4.539 20 H 0.069 0.931 21 C 0.088 3.912 22 N -0.762 5.762 23 Si 0.910 3.090 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.267 1.267 27 C 0.433 3.567 28 F -0.185 7.185 29 F -0.163 7.163 30 F -0.195 7.195 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.390 0.610 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 16.288 5.570 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.053 4.053 3 N -0.110 5.110 4 N -0.103 5.103 5 C 0.070 3.930 6 C -0.154 4.154 7 C -0.117 4.117 8 C -0.145 4.145 9 C -0.120 4.120 10 C -0.132 4.132 11 C -0.004 4.004 12 C -0.163 4.163 13 C -0.254 4.254 14 C 0.092 3.908 15 H 0.139 0.861 16 N -0.405 5.405 17 C 0.356 3.644 18 O -0.446 6.446 19 C -0.575 4.575 20 H 0.088 0.912 21 C -0.132 4.132 22 N -0.391 5.391 23 Si 0.734 3.266 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.192 1.192 27 C 0.376 3.624 28 F -0.167 7.167 29 F -0.144 7.144 30 F -0.177 7.177 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.224 0.776 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.747 16.651 5.776 21.180 hybrid contribution -1.066 -0.558 -0.439 1.281 sum 10.681 16.093 5.337 20.039 Atomic orbital electron populations 1.20823 0.85986 1.05506 1.03991 1.22346 0.97245 0.89549 0.96134 1.77464 0.84938 1.21932 1.26694 1.45577 1.04371 1.03209 1.57164 1.17472 0.84707 0.91970 0.98821 1.21168 0.92772 1.01742 0.99738 1.21011 0.97668 0.94079 0.98987 1.21246 0.98471 0.96873 0.97917 1.21074 0.92486 0.99469 0.98956 1.21038 0.99649 0.93523 0.98968 1.20854 0.96845 0.83823 0.98925 1.20769 0.92838 0.98778 1.03910 1.19487 0.91782 0.94914 1.19226 1.19556 0.94272 0.92261 0.84741 0.86127 1.46498 1.35466 1.13841 1.44697 1.18387 0.85021 0.79725 0.81250 1.90637 1.51353 1.38215 1.64375 1.20758 1.16548 0.95707 1.24520 0.91249 1.25690 0.96117 0.95315 0.96123 1.69994 1.33714 1.00161 1.35199 0.86399 0.81564 0.77769 0.80858 1.19253 1.20529 1.19174 1.21744 0.75533 0.75271 0.89864 1.92952 1.58523 1.71562 1.93613 1.93278 1.89827 1.34601 1.96742 1.93095 1.59726 1.95546 1.69290 0.89711 0.87575 0.90585 0.84820 0.85003 0.85467 0.85145 0.84868 0.89312 0.88608 0.90351 0.77556 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 8.46 36.00 0.30 -1.17 16 2 C 0.11 1.87 6.80 -82.37 -0.56 1.31 16 3 N -0.29 -4.74 12.34 33.69 0.42 -4.33 16 4 N -0.33 -4.88 3.74 -6.98 -0.03 -4.90 16 5 C 0.16 2.01 6.27 -83.60 -0.52 1.49 16 6 C -0.13 -1.33 8.28 -39.40 -0.33 -1.66 16 7 C -0.10 -0.77 10.04 -39.61 -0.40 -1.16 16 8 C -0.13 -0.92 10.04 -39.55 -0.40 -1.32 16 9 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 10 C -0.11 -1.24 9.76 -39.41 -0.38 -1.62 16 11 C 0.12 1.80 6.76 -82.14 -0.56 1.24 16 12 C -0.11 -1.21 8.34 36.01 0.30 -0.91 16 13 C -0.24 -4.09 4.68 -105.03 -0.49 -4.59 16 14 C 0.20 3.91 2.24 -69.08 -0.16 3.75 16 15 H 0.12 2.43 6.25 -51.93 -0.32 2.10 16 16 N -0.75 -16.17 4.71 -56.35 -0.27 -16.43 16 17 C 0.55 14.88 7.28 -12.99 -0.09 14.78 16 18 O -0.56 -17.15 13.59 5.19 0.07 -17.08 16 19 C -0.54 -14.62 9.54 -35.64 -0.34 -14.96 16 20 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 21 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 22 N -0.76 -22.11 11.83 55.55 0.66 -21.45 16 23 Si 0.91 19.62 29.56 -169.99 -5.02 14.60 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 C 0.43 8.45 2.82 37.16 0.10 8.56 16 28 F -0.18 -3.40 13.38 2.25 0.03 -3.37 16 29 F -0.16 -3.77 15.68 2.25 0.04 -3.73 16 30 F -0.19 -3.49 17.02 2.25 0.04 -3.45 16 31 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 32 H 0.11 1.61 4.26 -51.93 -0.22 1.39 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.13 1.21 6.12 -52.49 -0.32 0.88 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.09 0.87 7.75 -51.92 -0.40 0.46 16 40 H 0.10 1.16 7.01 -51.93 -0.36 0.80 16 41 H 0.08 0.76 6.90 -51.93 -0.36 0.41 16 42 H 0.39 7.56 5.81 -40.82 -0.24 7.32 16 43 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -34.37 368.33 -6.82 -41.19 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.29 Total: 8.62 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -4.01 Total: 4.79 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.78 Total: -47.11 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.07 Total: -17.08 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 0.10 Total: -10.55 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.37 -6.82 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195567594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.628 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds