Wall clock time and date at job start Tue Mar 31 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35343 * 126.14558 * 2 1 4 4 C 1.39898 * 107.93642 * 180.02562 * 3 2 1 5 5 N 1.30900 * 108.23398 * 359.73967 * 4 3 2 6 6 N 1.35199 * 126.13960 * 180.02562 * 2 1 3 7 7 C 1.40259 * 126.05716 * 359.94620 * 6 2 1 8 8 C 1.38702 * 120.09219 * 311.87426 * 7 6 2 9 9 C 1.38180 * 119.99976 * 179.97438 * 8 7 6 10 10 C 1.38313 * 120.20201 * 0.04317 * 9 8 7 11 11 C 1.38175 * 120.19079 * 359.67366 * 10 9 8 12 12 C 1.38735 * 119.99587 * 0.57858 * 11 10 9 13 13 N 1.40014 * 120.09952 * 179.71910 * 12 11 10 14 14 C 1.34773 * 119.99730 * 340.10360 * 13 12 11 15 15 O 1.21588 * 120.00226 * 354.42432 * 14 13 12 16 16 N 1.34780 * 119.99487 * 174.42757 * 14 13 12 17 17 C 1.40182 * 119.99687 * 179.97438 * 16 14 13 18 18 C 1.40403 * 125.97649 * 359.97438 * 17 16 14 19 19 C 1.35246 * 107.86926 * 179.97438 * 18 17 16 20 20 N 1.34963 * 107.85813 * 0.26430 * 19 18 17 21 21 C 1.46501 * 125.97516 * 179.71669 * 20 19 18 22 22 C 1.50701 * 109.46942 * 124.99637 * 21 20 19 23 23 H 1.08000 * 120.00076 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99768 * 179.97438 * 22 21 20 25 25 N 1.31513 * 120.00020 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99906 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46897 * 60.00214 * 26 24 22 28 28 H 1.48495 * 109.47187 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47569 * 300.00354 * 26 24 22 30 30 N 1.31217 * 125.97191 * 179.97438 * 17 16 14 31 31 H 1.09001 * 109.47581 * 264.77748 * 1 2 3 32 32 H 1.09005 * 109.47315 * 24.78391 * 1 2 3 33 33 H 1.09007 * 109.47407 * 144.78131 * 1 2 3 34 34 H 1.08003 * 126.03083 * 0.06669 * 3 2 1 35 35 H 1.07997 * 125.87942 * 180.02562 * 4 3 2 36 36 H 1.07996 * 120.00048 * 359.96774 * 8 7 6 37 37 H 1.08005 * 119.90339 * 180.02562 * 9 8 7 38 38 H 1.08001 * 119.90773 * 179.97438 * 10 9 8 39 39 H 1.08005 * 120.00133 * 180.30386 * 11 10 9 40 40 H 0.96995 * 119.99443 * 160.10451 * 13 12 11 41 41 H 0.96998 * 120.00282 * 359.97438 * 16 14 13 42 42 H 1.08005 * 126.06187 * 359.97438 * 18 17 16 43 43 H 1.08002 * 126.06491 * 179.97438 * 19 18 17 44 44 H 1.08998 * 109.47346 * 244.99851 * 21 20 19 45 45 H 1.09007 * 109.46871 * 5.00162 * 21 20 19 46 46 H 0.96996 * 119.99724 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3052 1.0929 0.0000 4 6 3.6342 0.6558 -0.0006 5 7 3.6347 -0.6532 0.0047 6 7 2.3043 -1.0918 -0.0005 7 6 1.8754 -2.4273 0.0000 8 6 0.9008 -2.8444 0.8944 9 6 0.4794 -4.1604 0.8928 10 6 1.0272 -5.0654 0.0018 11 6 1.9944 -4.6573 -0.8966 12 6 2.4273 -3.3392 -0.8986 13 7 3.4115 -2.9247 -1.8041 14 6 4.2185 -3.8343 -2.3853 15 8 4.1608 -5.0013 -2.0488 16 7 5.0895 -3.4503 -3.3395 17 6 5.9292 -4.3963 -3.9436 18 6 5.9687 -5.7693 -3.6526 19 6 6.9065 -6.3349 -4.4462 20 7 7.4468 -5.3604 -5.2077 21 6 8.5062 -5.5347 -6.2045 22 6 8.0416 -4.9920 -7.5314 23 1 7.0556 -4.5608 -7.6231 24 6 8.8752 -5.0460 -8.6283 25 7 10.0756 -5.5715 -8.5167 26 14 8.2991 -4.3739 -10.2732 27 1 7.9821 -2.9298 -10.1342 28 1 9.3729 -4.5505 -11.2836 29 1 7.0840 -5.1076 -10.7096 30 7 6.8158 -4.1535 -4.8800 31 1 -0.3634 -0.0935 1.0234 32 1 -0.3634 0.9330 -0.4308 33 1 -0.3634 -0.8396 -0.5927 34 1 1.9747 2.1211 0.0010 35 1 4.5089 1.2892 -0.0004 36 1 0.4714 -2.1407 1.5920 37 1 -0.2800 -4.4834 1.5896 38 1 0.6946 -6.0929 0.0050 39 1 2.4166 -5.3654 -1.5943 40 1 3.5125 -1.9829 -2.0130 41 1 5.1353 -2.5194 -3.6081 42 1 5.3584 -6.2827 -2.9242 43 1 7.1783 -7.3800 -4.4637 44 1 9.3985 -4.9968 -5.8842 45 1 8.7380 -6.5949 -6.3066 46 1 10.6619 -5.6099 -9.2884 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195577431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:15 Heat of formation + Delta-G solvation = 181.506595 kcal Electronic energy + Delta-G solvation = -31417.454716 eV Core-core repulsion = 27118.827647 eV Total energy + Delta-G solvation = -4298.627069 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 366.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02227 -41.02255 -40.14230 -38.81503 -35.23924 -34.86410 -33.84322 -33.37029 -32.44863 -31.10885 -30.07141 -29.34375 -28.88963 -27.38403 -26.65113 -24.04147 -23.64779 -22.86691 -21.83483 -21.15309 -20.49402 -20.29892 -19.88749 -18.29546 -17.85066 -17.48855 -16.59125 -16.45498 -15.92136 -15.82586 -15.47197 -15.10827 -14.92970 -14.65669 -14.52223 -14.34869 -14.04161 -13.94687 -13.86469 -13.42442 -13.28570 -13.10090 -12.87244 -12.53514 -12.36598 -12.29897 -12.17334 -11.89030 -11.74823 -11.12084 -11.02254 -10.94019 -10.82322 -10.52199 -10.26494 -10.19327 -10.01395 -9.72276 -9.52225 -9.22474 -8.78276 -8.63730 -8.29743 -8.11787 -7.47013 -6.24830 -4.29996 0.61546 1.00606 1.61455 2.04651 2.18194 2.46363 2.54644 2.97315 3.25004 3.28342 3.32192 3.41137 3.47636 3.76708 4.12829 4.18391 4.31174 4.33201 4.56970 4.62826 4.71782 4.91969 5.00991 5.03709 5.10192 5.11978 5.28711 5.30968 5.36861 5.44467 5.55854 5.72881 5.75207 5.80561 5.90658 6.08475 6.14523 6.23462 6.30140 6.47606 6.49799 6.56606 6.80310 6.91397 6.94113 7.06649 7.33476 7.39312 7.65572 7.72731 7.89370 8.03188 8.33764 8.60832 8.78926 9.35520 10.83872 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.001992 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.162915 B =14054.519828 C =15192.849751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.089 3.911 3 C -0.269 4.269 4 C 0.053 3.947 5 N -0.293 5.293 6 N -0.323 5.323 7 C 0.099 3.901 8 C -0.097 4.097 9 C -0.132 4.132 10 C -0.088 4.088 11 C -0.129 4.129 12 C 0.197 3.803 13 N -0.669 5.669 14 C 0.717 3.283 15 O -0.547 6.547 16 N -0.635 5.635 17 C 0.272 3.728 18 C -0.285 4.285 19 C 0.053 3.947 20 N -0.318 5.318 21 C 0.258 3.742 22 C -0.529 4.529 23 H 0.068 0.932 24 C 0.062 3.938 25 N -0.895 5.895 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.275 1.275 30 N -0.303 5.303 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.188 0.812 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.170 0.830 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.732 8.964 20.236 31.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.036 4.036 3 C -0.298 4.298 4 C -0.133 4.133 5 N -0.111 5.111 6 N -0.101 5.101 7 C 0.005 3.995 8 C -0.117 4.117 9 C -0.152 4.152 10 C -0.107 4.107 11 C -0.150 4.150 12 C 0.098 3.902 13 N -0.314 5.314 14 C 0.417 3.583 15 O -0.422 6.422 16 N -0.284 5.284 17 C 0.019 3.981 18 C -0.317 4.317 19 C -0.097 4.097 20 N -0.100 5.100 21 C 0.141 3.859 22 C -0.568 4.568 23 H 0.086 0.914 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.735 3.265 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.200 1.200 30 N -0.134 5.134 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.205 0.795 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.187 0.813 40 H 0.246 0.754 41 H 0.244 0.756 42 H 0.179 0.821 43 H 0.186 0.814 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.179 7.619 19.500 29.077 hybrid contribution -0.732 1.644 -0.600 1.897 sum -20.910 9.263 18.900 29.669 Atomic orbital electron populations 1.20534 0.87099 1.04293 1.03373 1.21274 0.94914 0.86698 1.00761 1.21300 0.92230 0.99012 1.17275 1.24060 0.98426 0.92124 0.98691 1.77668 0.95506 1.13095 1.24854 1.45729 1.04281 1.03242 1.56836 1.17004 1.02245 0.81101 0.99165 1.20812 0.97287 0.96896 0.96750 1.20971 1.01472 0.92196 1.00552 1.21246 0.95015 1.00040 0.94374 1.21809 0.97102 0.94642 1.01453 1.17437 0.89882 0.93735 0.89187 1.42468 1.33978 1.10743 1.44241 1.15491 0.78776 0.84696 0.79298 1.90777 1.70416 1.16055 1.64985 1.41302 1.37542 1.11018 1.38516 1.18728 0.94444 0.88931 0.96036 1.21495 1.08099 0.92200 1.09876 1.22565 0.96754 0.96003 0.94416 1.49090 1.28949 1.02545 1.29410 1.19756 0.82867 0.98751 0.84526 1.21211 1.02115 1.40752 0.92684 0.91375 1.24945 0.94653 0.95004 0.99470 1.69906 1.07636 1.44317 1.31457 0.86384 0.78280 0.79669 0.82141 1.19953 1.21026 1.20047 1.77346 1.12029 1.07055 1.16996 0.90107 0.89450 0.90624 0.83121 0.79521 0.85193 0.85051 0.84869 0.81342 0.75362 0.75613 0.82112 0.81392 0.93683 0.92463 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 8.98 36.00 0.32 -0.15 16 2 C 0.09 0.74 6.77 -82.14 -0.56 0.19 16 3 C -0.27 -2.14 10.72 -39.99 -0.43 -2.57 16 4 C 0.05 0.49 12.03 -17.33 -0.21 0.28 16 5 N -0.29 -3.48 11.14 30.64 0.34 -3.14 16 6 N -0.32 -3.44 3.27 -6.86 -0.02 -3.46 16 7 C 0.10 1.06 5.99 -83.39 -0.50 0.56 16 8 C -0.10 -0.80 8.78 -39.43 -0.35 -1.14 16 9 C -0.13 -0.96 10.04 -39.58 -0.40 -1.36 16 10 C -0.09 -0.76 10.04 -39.58 -0.40 -1.16 16 11 C -0.13 -1.51 8.78 -39.42 -0.35 -1.85 16 12 C 0.20 2.41 6.51 -83.50 -0.54 1.86 16 13 N -0.67 -8.61 5.05 -14.11 -0.07 -8.68 16 14 C 0.72 11.13 8.38 -86.92 -0.73 10.40 16 15 O -0.55 -9.50 10.38 5.29 0.05 -9.45 16 16 N -0.63 -10.30 5.45 -15.51 -0.08 -10.39 16 17 C 0.27 5.52 8.11 -154.37 -1.25 4.27 16 18 C -0.29 -5.64 9.61 -39.83 -0.38 -6.02 16 19 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 20 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 21 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 22 C -0.53 -14.73 9.23 -34.44 -0.32 -15.05 16 23 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 24 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 26 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 N -0.30 -7.02 12.42 31.44 0.39 -6.63 16 31 H 0.08 0.29 7.84 -51.93 -0.41 -0.12 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.39 7.76 -51.93 -0.40 -0.01 16 34 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.19 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.13 0.81 7.28 -52.49 -0.38 0.43 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.17 2.26 5.43 -52.48 -0.29 1.98 16 40 H 0.41 4.83 7.31 -40.82 -0.30 4.53 16 41 H 0.41 5.61 8.84 -40.82 -0.36 5.25 16 42 H 0.16 3.05 5.91 -52.48 -0.31 2.74 16 43 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.42 8.07 -51.92 -0.42 1.00 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 393.77 15.07 5.93 5.93 Total: -1.00 -33.96 393.77 -9.75 -43.71 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.37 Total: 10.69 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -6.41 Total: -2.73 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 1.06 Total: -64.53 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.05 Total: -9.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.96 -9.75 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195577431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.215 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds