Wall clock time and date at job start Tue Mar 31 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.38854 * 119.99804 * 2 1 4 4 C 1.39569 * 119.84055 * 106.72436 * 3 2 1 5 5 C 1.36345 * 120.16042 * 179.71747 * 4 3 2 6 6 C 1.40891 * 119.83251 * 0.54703 * 5 4 3 7 7 C 1.41138 * 120.15058 * 179.69960 * 6 5 4 8 8 H 1.08003 * 119.99455 * 155.45716 * 7 6 5 9 9 C 1.39858 * 120.00146 * 335.45235 * 7 6 5 10 10 N 1.30902 * 120.00541 * 339.93518 * 9 7 6 11 11 Si 1.86802 * 119.99770 * 159.93275 * 9 7 6 12 12 H 1.48499 * 109.47241 * 94.97448 * 11 9 7 13 13 H 1.48507 * 109.47258 * 214.97522 * 11 9 7 14 14 H 1.48502 * 109.46921 * 334.97129 * 11 9 7 15 15 C 1.40886 * 119.69039 * 359.72546 * 6 5 4 16 16 C 1.36338 * 119.83489 * 359.97438 * 15 6 5 17 17 S 1.65596 * 119.99746 * 180.02562 * 2 1 3 18 18 O 1.42103 * 106.40419 * 329.93528 * 17 2 1 19 19 O 1.42100 * 106.39828 * 197.01798 * 17 2 1 20 20 C 1.76202 * 107.21999 * 83.47712 * 17 2 1 21 21 C 1.39376 * 119.50513 * 269.97687 * 20 17 2 22 22 C 1.36086 * 120.98334 * 179.97438 * 21 20 17 23 23 C 1.40539 * 119.66008 * 0.04521 * 22 21 20 24 24 C 1.40539 * 121.28613 * 179.97438 * 23 22 21 25 25 C 1.36087 * 119.65717 * 179.97438 * 24 23 22 26 26 C 1.39377 * 120.98496 * 359.96679 * 25 24 23 27 27 C 1.36095 * 120.99245 * 0.05379 * 26 25 24 28 28 C 1.40535 * 119.65333 * 359.96633 * 27 26 25 29 29 C 1.36097 * 119.50010 * 89.99741 * 20 17 2 30 30 H 1.08995 * 109.47152 * 269.99870 * 1 2 3 31 31 H 1.09000 * 109.46926 * 30.00333 * 1 2 3 32 32 H 1.09001 * 109.46994 * 149.99859 * 1 2 3 33 33 H 1.07993 * 119.92008 * 359.97438 * 4 3 2 34 34 H 1.07990 * 120.08371 * 180.27537 * 5 4 3 35 35 H 0.97000 * 120.00568 * 180.02562 * 10 9 7 36 36 H 1.08003 * 120.08102 * 179.97438 * 15 6 5 37 37 H 1.07999 * 119.91698 * 179.97438 * 16 15 6 38 38 H 1.07997 * 119.50125 * 0.02562 * 21 20 17 39 39 H 1.08004 * 120.16763 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.17107 * 359.96107 * 24 23 22 41 41 H 1.07997 * 119.50810 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.50540 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.17049 * 180.23727 * 27 26 25 44 44 H 1.07997 * 120.17812 * 359.95545 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1593 1.2025 0.0000 4 6 2.8083 1.6298 1.1594 5 6 3.4966 2.8067 1.1650 6 6 3.5422 3.5976 0.0000 7 6 4.2475 4.8201 0.0002 8 1 4.6240 5.2264 -0.9270 9 6 4.4587 5.5054 1.2009 10 7 3.7021 5.2551 2.2394 11 14 5.8208 6.7780 1.3229 12 1 5.2613 8.1285 1.0612 13 1 6.4112 6.7422 2.6850 14 1 6.8726 6.4749 0.3193 15 6 2.8800 3.1627 -1.1650 16 6 2.2006 1.9807 -1.1578 17 16 2.2930 -1.4341 -0.0006 18 8 1.4719 -2.3718 0.6819 19 8 3.6225 -1.1300 0.3985 20 6 2.3882 -1.9807 -1.6730 21 6 1.3819 -2.7967 -2.1869 22 6 1.4249 -3.2357 -3.4742 23 6 2.4992 -2.8635 -4.3004 24 6 2.5782 -3.2977 -5.6347 25 6 3.6332 -2.9168 -6.4054 26 6 4.6392 -2.1002 -5.8918 27 6 4.5962 -1.6609 -4.6044 28 6 3.5225 -2.0338 -3.7779 29 6 3.4436 -1.6001 -2.4434 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 2.7685 1.0248 2.0531 34 1 4.0020 3.1339 2.0615 35 1 3.8483 5.7306 3.0720 36 1 2.9104 3.7642 -2.0615 37 1 1.6922 1.6462 -2.0500 38 1 0.5552 -3.0840 -1.5541 39 1 0.6381 -3.8679 -3.8587 40 1 1.8059 -3.9305 -6.0463 41 1 3.6913 -3.2515 -7.4305 42 1 5.4654 -1.8120 -6.5248 43 1 5.3810 -1.0254 -4.2212 44 1 4.2159 -0.9673 -2.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225055882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:47 Heat of formation + Delta-G solvation = -2.656738 kcal Electronic energy + Delta-G solvation = -30010.058395 eV Core-core repulsion = 25983.894112 eV Total energy + Delta-G solvation = -4026.164283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.103 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.47792 -38.15172 -36.85515 -36.65552 -35.44081 -35.38200 -33.26698 -32.96513 -30.62432 -29.71690 -29.43433 -29.21896 -26.38923 -24.33837 -23.97891 -23.29296 -22.14073 -21.06598 -20.99259 -19.02649 -17.86621 -17.45205 -17.40702 -17.01620 -16.86594 -15.98288 -15.44284 -15.20243 -14.88775 -14.50368 -14.18001 -14.04620 -13.89172 -13.82064 -13.55848 -13.30729 -12.89408 -12.86594 -12.53541 -12.37717 -12.18363 -12.06229 -11.78072 -11.72257 -11.65261 -11.64681 -11.46678 -11.19803 -11.07990 -11.03141 -10.94467 -10.63568 -10.58103 -10.22217 -9.95611 -9.68484 -9.23328 -8.98559 -8.63426 -8.16250 -7.64718 -7.37113 -6.93026 -4.46899 0.19485 0.63171 0.80054 1.82275 2.59415 2.60669 3.00751 3.01809 3.04295 3.10393 3.40931 3.82629 3.86043 4.12872 4.34015 4.42976 4.59882 4.63995 4.72696 4.94854 4.97240 5.10471 5.18194 5.24856 5.29848 5.55404 5.58140 5.71279 5.74327 5.80940 5.94514 6.00649 6.05115 6.10186 6.13540 6.25279 6.26207 6.31191 6.38996 6.61709 6.74480 6.76870 6.91889 7.00141 7.14401 7.23155 7.48948 7.85762 7.93627 8.03579 8.14772 8.49455 8.73103 8.84799 10.00215 Molecular weight = 367.10amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.002985 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.716452 B = 9378.066897 C =11016.322947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.916 5.916 3 C -0.025 4.025 4 C -0.067 4.067 5 C -0.164 4.164 6 C 0.121 3.879 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.076 3.924 10 N -0.777 5.777 11 Si 0.909 3.091 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.258 1.258 15 C -0.224 4.224 16 C -0.072 4.072 17 S 2.668 3.332 18 O -0.970 6.970 19 O -0.943 6.943 20 C -0.670 4.670 21 C -0.041 4.041 22 C -0.128 4.128 23 C -0.015 4.015 24 C -0.122 4.122 25 C -0.099 4.099 26 C -0.130 4.130 27 C -0.084 4.084 28 C -0.079 4.079 29 C 0.025 3.975 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.284 0.716 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -12.137 -11.949 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.748 5.748 3 C -0.120 4.120 4 C -0.088 4.088 5 C -0.184 4.184 6 C 0.118 3.882 7 C -0.478 4.478 8 H 0.100 0.900 9 C -0.144 4.144 10 N -0.401 5.401 11 Si 0.732 3.268 12 H -0.195 1.195 13 H -0.198 1.198 14 H -0.182 1.182 15 C -0.245 4.245 16 C -0.093 4.093 17 S 2.761 3.239 18 O -0.961 6.961 19 O -0.933 6.933 20 C -0.755 4.755 21 C -0.060 4.060 22 C -0.147 4.147 23 C -0.015 4.015 24 C -0.140 4.140 25 C -0.117 4.117 26 C -0.148 4.148 27 C -0.102 4.102 28 C -0.080 4.080 29 C 0.006 3.994 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.153 0.847 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.568 -12.595 -10.987 16.910 hybrid contribution 0.285 0.638 -0.704 0.991 sum -2.284 -11.957 -11.691 16.878 Atomic orbital electron populations 1.21532 0.79142 1.02137 1.01956 1.54220 1.13384 1.19156 1.88035 1.16561 1.10278 0.89871 0.95338 1.20548 0.97345 0.95994 0.94895 1.20884 1.03737 0.93849 0.99967 1.17702 0.87847 0.91758 0.90918 1.19651 1.29759 1.04102 0.94269 0.89973 1.25993 0.95595 0.97792 0.95055 1.69863 1.31602 1.35746 1.02906 0.86289 0.81389 0.80143 0.78949 1.19456 1.19831 1.18192 1.20594 1.05968 0.98566 0.99345 1.20406 0.98590 0.95097 0.95219 1.03216 0.73822 0.72677 0.74170 1.93519 1.69534 1.61871 1.71146 1.93582 1.35879 1.83565 1.80291 1.30993 1.03615 1.12944 1.27900 1.20471 0.96368 0.93520 0.95602 1.21021 0.98094 1.01567 0.94014 1.18248 0.94020 0.95254 0.94025 1.21052 0.99105 1.00940 0.92883 1.20950 0.93940 0.96908 0.99871 1.20887 0.99361 0.98740 0.95783 1.21221 0.96906 0.98200 0.93826 1.18223 0.95872 0.99499 0.94387 1.21077 0.94756 0.91851 0.91710 0.92470 0.90840 0.92313 0.89200 0.86324 0.90453 0.88589 0.89195 0.84576 0.84993 0.85345 0.85772 0.85594 0.84742 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.44 10.26 59.85 0.61 2.06 16 2 N -0.92 -16.72 3.16 -65.25 -0.21 -16.92 16 3 C -0.03 -0.54 4.74 -83.69 -0.40 -0.94 16 4 C -0.07 -1.57 9.16 -39.77 -0.36 -1.94 16 5 C -0.16 -4.16 8.64 -39.26 -0.34 -4.50 16 6 C 0.12 3.06 5.57 -106.79 -0.59 2.47 16 7 C -0.45 -11.24 9.02 -37.88 -0.34 -11.58 16 8 H 0.08 1.95 7.92 -52.48 -0.42 1.54 16 9 C 0.08 1.80 5.08 -17.34 -0.09 1.72 16 10 N -0.78 -19.11 11.09 55.54 0.62 -18.49 16 11 Si 0.91 17.68 29.60 -169.99 -5.03 12.64 16 12 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 14 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 15 C -0.22 -5.16 9.74 -39.26 -0.38 -5.54 16 16 C -0.07 -1.52 9.80 -39.77 -0.39 -1.91 16 17 S 2.67 48.37 5.56 -107.50 -0.60 47.78 16 18 O -0.97 -18.33 16.54 -57.17 -0.95 -19.28 16 19 O -0.94 -19.94 15.77 -57.17 -0.90 -20.85 16 20 C -0.67 -10.49 5.94 -39.93 -0.24 -10.73 16 21 C -0.04 -0.55 9.42 -39.93 -0.38 -0.93 16 22 C -0.13 -1.51 9.77 -39.49 -0.39 -1.90 16 23 C -0.02 -0.19 5.74 -106.83 -0.61 -0.80 16 24 C -0.12 -1.20 9.77 -39.49 -0.39 -1.58 16 25 C -0.10 -0.88 9.95 -39.93 -0.40 -1.28 16 26 C -0.13 -1.24 9.95 -39.93 -0.40 -1.64 16 27 C -0.08 -0.97 9.77 -39.49 -0.39 -1.35 16 28 C -0.08 -1.08 5.74 -106.83 -0.61 -1.69 16 29 C 0.03 0.39 9.22 -39.48 -0.36 0.02 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 32 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 33 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.12 3.09 6.24 -52.49 -0.33 2.76 16 35 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 36 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.14 1.61 7.57 -52.49 -0.40 1.22 16 39 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 44 H 0.15 2.28 7.54 -52.49 -0.40 1.89 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -30.39 386.43 -12.99 -43.38 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.30 Total: 7.95 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: -6.44 Total: -42.04 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.41 Total: -35.41 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.85 Total: -40.13 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 48.37 SS G_CDS: -0.60 Total: 47.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.39 -12.99 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225055882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.722 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds