Wall clock time and date at job start Tue Mar 31 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48501 * 109.47173 * 264.98959 * 3 2 1 5 5 H 1.48499 * 109.47027 * 24.99172 * 3 2 1 6 6 H 1.48497 * 109.47108 * 144.98810 * 3 2 1 7 7 C 1.39860 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00524 * 197.43590 * 7 2 1 9 9 C 1.41136 * 120.00064 * 17.44251 * 7 2 1 10 10 C 1.40887 * 120.15734 * 25.66828 * 9 7 2 11 11 C 1.36336 * 119.83786 * 180.25297 * 10 9 7 12 12 C 1.39569 * 120.16116 * 359.50562 * 11 10 9 13 13 N 1.38862 * 119.84167 * 180.25704 * 12 11 10 14 14 C 1.46492 * 120.00266 * 64.64816 * 13 12 11 15 15 C 1.50699 * 109.47034 * 85.00180 * 14 13 12 16 16 O 1.20823 * 120.00008 * 0.02562 * 15 14 13 17 17 O 1.34230 * 119.99791 * 179.97438 * 15 14 13 18 18 S 1.65600 * 119.99434 * 244.65035 * 13 12 11 19 19 O 1.42097 * 106.39898 * 198.36424 * 18 13 12 20 20 O 1.42107 * 106.40365 * 331.28032 * 18 13 12 21 21 C 1.76197 * 107.22206 * 84.82350 * 18 13 12 22 22 C 1.33395 * 125.20336 * 89.99662 * 21 18 13 23 23 C 1.38420 * 114.92186 * 179.97438 * 22 21 18 24 24 C 1.33392 * 114.91992 * 359.97438 * 23 22 21 25 25 S 1.75886 * 109.59526 * 359.76152 * 24 23 22 26 26 C 1.39568 * 120.31382 * 0.27214 * 12 11 10 27 27 C 1.36341 * 120.16169 * 359.97438 * 26 12 11 28 28 H 0.96997 * 120.00132 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.07990 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.92283 * 179.77641 * 11 10 9 31 31 H 1.09003 * 109.46982 * 204.99890 * 14 13 12 32 32 H 1.09001 * 109.46987 * 324.99814 * 14 13 12 33 33 H 0.96702 * 117.00030 * 179.97438 * 17 15 14 34 34 H 1.07997 * 122.53607 * 359.95431 * 22 21 18 35 35 H 1.07992 * 122.54140 * 180.02562 * 23 22 21 36 36 H 1.08006 * 125.20269 * 180.02562 * 24 23 22 37 37 H 1.08002 * 119.91723 * 180.02562 * 26 12 11 38 38 H 1.08000 * 120.08144 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.5964 1.9854 -1.3947 5 1 1.3915 2.6809 0.5915 6 1 3.4835 1.4732 0.8033 7 6 2.0084 -1.2112 -0.0005 8 1 3.0512 -1.2329 0.2797 9 6 1.3514 -2.4052 -0.3674 10 6 0.2299 -2.3631 -1.2191 11 6 -0.4028 -3.5200 -1.5652 12 6 0.0640 -4.7450 -1.0863 13 7 -0.5823 -5.9198 -1.4473 14 6 -0.5925 -6.3497 -2.8477 15 6 0.6672 -7.1214 -3.1455 16 8 1.4889 -7.2950 -2.2768 17 8 0.8758 -7.6169 -4.3754 18 16 -1.3417 -6.8348 -0.2947 19 8 -1.5153 -8.1274 -0.8588 20 8 -0.6455 -6.6052 0.9227 21 6 -2.9571 -6.1654 -0.0781 22 6 -4.0414 -6.5371 -0.7604 23 6 -5.2042 -5.8696 -0.4164 24 6 -5.0644 -4.9562 0.5456 25 16 -3.3883 -4.9110 1.0770 26 6 1.1773 -4.7948 -0.2460 27 6 1.8170 -3.6454 0.1124 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1299 -1.4163 -1.5939 30 1 -1.2649 -3.4890 -2.2151 31 1 -1.4593 -6.9862 -3.0261 32 1 -0.6445 -5.4749 -3.4959 33 1 1.6985 -8.1045 -4.5185 34 1 -4.0139 -7.3007 -1.5236 35 1 -6.1529 -6.0734 -0.8904 36 1 -5.8597 -4.3417 0.9410 37 1 1.5334 -5.7463 0.1206 38 1 2.6785 -3.6854 0.7624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225132261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:17 Heat of formation + Delta-G solvation = -95.152929 kcal Electronic energy + Delta-G solvation = -28777.252076 eV Core-core repulsion = 24610.854619 eV Total energy + Delta-G solvation = -4166.397457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 367.043 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04058 -38.14404 -37.78523 -36.86564 -36.06675 -35.52796 -35.27596 -33.33349 -29.86097 -29.73862 -29.53819 -27.60599 -24.72902 -24.36066 -21.86672 -21.34835 -20.75367 -20.01882 -18.97494 -18.14338 -17.97858 -17.42721 -17.21501 -16.55131 -16.15665 -15.73443 -15.47025 -15.31704 -14.73653 -14.53938 -13.98497 -13.69948 -13.21979 -12.95455 -12.93196 -12.90989 -12.57102 -12.52085 -12.30543 -12.13607 -11.76267 -11.74391 -11.56284 -11.33258 -11.25943 -11.23642 -11.18217 -10.94615 -10.81321 -10.68683 -10.49290 -9.87407 -9.72178 -9.34044 -9.25485 -8.92957 -8.48926 -7.63516 -7.33347 -6.92917 -4.48414 0.40265 0.71772 1.54882 1.91023 2.43767 2.45627 2.51860 2.98001 3.00377 3.02849 3.06861 3.20317 3.35758 3.81744 4.03428 4.41148 4.75433 4.85511 4.94864 5.23644 5.25133 5.32992 5.42150 5.57179 5.78117 5.96866 6.03041 6.15937 6.25193 6.40563 6.64541 6.67620 6.91428 6.95296 7.17027 7.21544 7.51619 7.88128 7.95117 7.95626 8.09656 8.16641 8.48197 8.73449 8.83852 10.00143 Molecular weight = 367.04amu Principal moments of inertia in cm(-1) A = 0.009432 B = 0.004217 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.059564 B = 6638.499105 C = 8593.363202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.447 4.447 8 H 0.082 0.918 9 C 0.123 3.877 10 C -0.166 4.166 11 C -0.081 4.081 12 C -0.040 4.040 13 N -0.893 5.893 14 C 0.135 3.865 15 C 0.461 3.539 16 O -0.495 6.495 17 O -0.522 6.522 18 S 2.696 3.304 19 O -0.966 6.966 20 O -0.933 6.933 21 C -0.786 4.786 22 C -0.010 4.010 23 C -0.166 4.166 24 C -0.191 4.191 25 S 0.254 5.746 26 C -0.040 4.040 27 C -0.225 4.225 28 H 0.283 0.717 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.407 0.593 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.100 0.900 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 -7.006 -5.434 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.476 4.476 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.186 4.186 11 C -0.103 4.103 12 C -0.135 4.135 13 N -0.723 5.723 14 C 0.007 3.993 15 C 0.300 3.700 16 O -0.381 6.381 17 O -0.333 6.333 18 S 2.787 3.213 19 O -0.956 6.956 20 O -0.923 6.923 21 C -0.987 4.987 22 C -0.046 4.046 23 C -0.197 4.197 24 C -0.330 4.330 25 S 0.522 5.478 26 C -0.061 4.061 27 C -0.245 4.245 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.265 0.735 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.187 0.813 37 H 0.119 0.881 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.553 -6.591 -3.522 11.358 hybrid contribution -0.606 0.147 -1.284 1.427 sum -9.160 -6.444 -4.805 12.187 Atomic orbital electron populations 1.69853 1.07633 1.29638 1.33434 1.25980 0.94794 1.01567 0.92092 0.86267 0.80458 0.80096 0.79647 1.19058 1.20226 1.18490 1.19686 0.98227 0.91204 1.38468 0.89974 1.17746 0.90661 0.92112 0.87560 1.20893 0.99693 0.96516 1.01494 1.20461 0.98134 0.91971 0.99709 1.16631 1.00658 0.82745 1.13457 1.54117 1.64536 1.36659 1.16959 1.20754 0.93412 0.99927 0.85187 1.24176 0.89372 0.76919 0.79577 1.90730 1.45599 1.54672 1.47088 1.84505 1.46733 1.67808 1.34301 1.02448 0.72220 0.72792 0.73831 1.93521 1.86748 1.36461 1.78912 1.93604 1.70321 1.85100 1.43262 1.36140 1.27356 1.19616 1.15571 1.19944 0.90280 0.97240 0.97098 1.20320 0.99855 0.98969 1.00576 1.26326 1.01793 1.02981 1.01854 1.84685 0.99530 1.30982 1.32646 1.20520 0.92333 0.97671 0.95545 1.20650 1.04299 0.92476 1.07078 0.90560 0.86201 0.89008 0.86417 0.85714 0.73480 0.83262 0.83760 0.81252 0.88144 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.73 11.00 55.54 0.61 -18.12 16 2 C 0.08 1.76 5.13 -17.34 -0.09 1.67 16 3 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.45 -11.18 9.03 -37.88 -0.34 -11.52 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 9 C 0.12 3.10 5.56 -106.79 -0.59 2.50 16 10 C -0.17 -3.95 8.63 -39.27 -0.34 -4.29 16 11 C -0.08 -1.72 9.47 -39.77 -0.38 -2.10 16 12 C -0.04 -0.85 5.11 -83.68 -0.43 -1.28 16 13 N -0.89 -16.18 2.31 -59.68 -0.14 -16.32 16 14 C 0.13 1.94 5.88 -5.20 -0.03 1.90 16 15 C 0.46 7.21 8.37 36.01 0.30 7.52 16 16 O -0.50 -9.69 17.11 -18.75 -0.32 -10.01 16 17 O -0.52 -6.09 13.42 -39.26 -0.53 -6.62 16 18 S 2.70 50.08 5.75 -107.50 -0.62 49.47 16 19 O -0.97 -18.11 16.60 -57.17 -0.95 -19.06 16 20 O -0.93 -20.45 15.74 -57.17 -0.90 -21.35 16 21 C -0.79 -12.47 6.57 29.04 0.19 -12.28 16 22 C -0.01 -0.13 9.84 -41.21 -0.41 -0.53 16 23 C -0.17 -1.84 10.18 -41.21 -0.42 -2.26 16 24 C -0.19 -2.21 11.23 29.04 0.33 -1.88 16 25 S 0.25 3.91 23.21 -107.50 -2.50 1.42 16 26 C -0.04 -0.93 8.68 -39.77 -0.35 -1.28 16 27 C -0.22 -5.50 9.74 -39.26 -0.38 -5.88 16 28 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 29 H 0.12 2.92 6.22 -52.49 -0.33 2.59 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.12 1.31 7.46 -51.93 -0.39 0.93 16 32 H 0.13 1.51 7.77 -51.93 -0.40 1.11 16 33 H 0.41 3.10 9.10 45.56 0.41 3.51 16 34 H 0.15 1.57 8.05 -52.49 -0.42 1.15 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.17 1.42 8.06 -52.48 -0.42 0.99 16 37 H 0.10 2.39 7.52 -52.49 -0.39 2.00 16 38 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -32.32 364.05 -10.57 -42.89 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -2.76 Total: 9.41 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: -2.93 Total: -29.70 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.47 Total: -34.44 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -2.70 Total: -57.04 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 54.00 SS G_CDS: -3.11 Total: 50.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.32 -10.57 -42.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225132261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.260 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds