Wall clock time and date at job start Tue Mar 31 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46968 * 300.00030 * 3 2 1 6 6 H 1.48500 * 109.47524 * 60.00093 * 3 2 1 7 7 C 1.38672 * 119.99515 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99428 * 179.97438 * 7 2 1 9 9 O 1.34782 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.35561 * 117.00149 * 185.06232 * 9 7 2 11 11 C 1.38744 * 120.16898 * 354.40435 * 10 9 7 12 12 C 1.38092 * 120.09296 * 180.02562 * 11 10 9 13 13 C 1.38586 * 120.44096 * 0.02562 * 12 11 10 14 14 C 1.37813 * 120.33608 * 359.68272 * 13 12 11 15 15 C 1.39836 * 119.89716 * 0.59198 * 14 13 12 16 16 C 1.47007 * 120.21742 * 179.70017 * 15 14 13 17 17 C 1.34872 * 119.99550 * 359.73161 * 16 15 14 18 18 C 1.46459 * 119.99764 * 180.02562 * 17 16 15 19 19 N 1.29665 * 124.89284 * 359.97226 * 18 17 16 20 20 C 1.33435 * 118.07098 * 180.02562 * 19 18 17 21 21 C 1.41658 * 128.49608 * 180.02562 * 20 19 18 22 22 C 1.35601 * 120.76151 * 179.97438 * 21 20 19 23 23 C 1.40291 * 120.62878 * 359.97438 * 22 21 20 24 24 C 1.47375 * 120.16145 * 179.97438 * 23 22 21 25 25 O 1.21516 * 120.00122 * 180.02562 * 24 23 22 26 26 O 1.34772 * 119.99698 * 0.02562 * 24 23 22 27 27 C 1.39326 * 119.68158 * 359.78200 * 23 22 21 28 28 C 1.38857 * 119.93799 * 0.44153 * 27 23 22 29 29 S 1.75829 * 124.89310 * 180.02562 * 18 17 16 30 30 H 0.97004 * 120.00155 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.95249 * 0.02562 * 11 10 9 32 32 H 1.07995 * 119.77813 * 180.02562 * 12 11 10 33 33 H 1.08002 * 119.82858 * 179.97438 * 13 12 11 34 34 H 1.08007 * 120.04789 * 180.29853 * 14 13 12 35 35 H 1.08000 * 120.00354 * 179.72792 * 16 15 14 36 36 H 1.08000 * 120.00096 * 359.97438 * 17 16 15 37 37 H 1.07992 * 119.62001 * 0.02562 * 21 20 19 38 38 H 1.07998 * 119.68563 * 180.02562 * 22 21 20 39 39 H 0.96707 * 116.99882 * 179.97438 * 26 24 23 40 40 H 1.08002 * 120.03393 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7094 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0087 -1.2010 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0690 -3.5028 0.1055 11 6 3.4550 -3.4403 0.0911 12 6 4.2014 -4.5972 0.1987 13 6 3.5757 -5.8277 0.3212 14 6 2.2002 -5.9100 0.3435 15 6 1.4305 -4.7481 0.2297 16 6 -0.0373 -4.8284 0.2460 17 6 -0.6457 -6.0261 0.3656 18 6 -2.1080 -6.1062 0.3814 19 7 -2.9076 -5.0898 0.2875 20 6 -4.2217 -5.3197 0.3174 21 6 -5.2826 -4.3849 0.2325 22 6 -6.5741 -4.7954 0.2794 23 6 -6.8871 -6.1564 0.4126 24 6 -8.2944 -6.5911 0.4629 25 8 -8.5622 -7.7707 0.5788 26 8 -9.2843 -5.6803 0.3805 27 6 -5.8612 -7.0956 0.4929 28 6 -4.5368 -6.6806 0.4502 29 16 -3.0323 -7.5944 0.5315 30 1 -0.4850 0.8401 0.0004 31 1 3.9507 -2.4856 -0.0044 32 1 5.2799 -4.5426 0.1874 33 1 4.1692 -6.7262 0.4042 34 1 1.7175 -6.8709 0.4439 35 1 -0.6283 -3.9284 0.1623 36 1 -0.0547 -6.9261 0.4490 37 1 -5.0603 -3.3332 0.1285 38 1 -7.3694 -4.0677 0.2127 39 1 -10.1915 -6.0132 0.4177 40 1 -6.0956 -8.1449 0.5951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225458205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:20 Heat of formation + Delta-G solvation = -18.840366 kcal Electronic energy + Delta-G solvation = -27563.684600 eV Core-core repulsion = 23400.985447 eV Total energy + Delta-G solvation = -4162.699153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.071 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78121 -39.84902 -39.33098 -37.10402 -36.64749 -36.30797 -33.92487 -32.54994 -31.36982 -30.69903 -29.27656 -28.66497 -25.71714 -25.35252 -23.94536 -23.44113 -21.97624 -21.32788 -21.04562 -19.18304 -18.75299 -18.19635 -18.01943 -17.46245 -16.89341 -15.89140 -15.82243 -15.77725 -15.18941 -14.71693 -14.66160 -14.55070 -14.15930 -14.02395 -13.96723 -13.90537 -13.69756 -13.07251 -12.71993 -12.61731 -12.54247 -12.28835 -11.90029 -11.81625 -11.69703 -11.63139 -11.10356 -11.00837 -10.94857 -10.90212 -10.67110 -10.53388 -10.28630 -10.09496 -9.63769 -9.50855 -9.06500 -8.78119 -8.28189 -7.88727 -7.15347 -6.68377 -4.23787 -0.20947 1.01139 1.12943 1.16675 1.63485 1.87887 2.18285 2.57652 2.76078 3.01014 3.02080 3.08025 3.18142 3.66074 3.77758 3.92244 4.43989 4.46445 4.72622 4.85186 4.86024 4.96833 4.98549 5.05691 5.23971 5.37772 5.52693 5.59838 5.69034 5.70910 5.85800 5.93077 5.99063 6.02934 6.13658 6.19450 6.41960 6.45152 6.56055 6.64208 6.74097 6.93233 7.10499 7.15728 7.25045 7.56854 7.60811 7.72791 7.75388 8.75083 9.39537 10.47139 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.002248 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.465371 B =12449.862405 C =15133.286930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.394 4.394 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.175 3.825 11 C -0.234 4.234 12 C -0.053 4.053 13 C -0.221 4.221 14 C -0.043 4.043 15 C -0.176 4.176 16 C 0.058 3.942 17 C -0.208 4.208 18 C 0.212 3.788 19 N -0.493 5.493 20 C 0.151 3.849 21 C -0.088 4.088 22 C -0.054 4.054 23 C -0.141 4.141 24 C 0.535 3.465 25 O -0.519 6.519 26 O -0.510 6.510 27 C 0.014 3.986 28 C -0.214 4.214 29 S 0.053 5.947 30 H 0.275 0.725 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.414 0.586 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 -10.429 0.779 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.054 6.054 10 C 0.118 3.882 11 C -0.253 4.253 12 C -0.072 4.072 13 C -0.240 4.240 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.033 3.967 17 C -0.231 4.231 18 C -0.063 4.063 19 N -0.206 5.206 20 C 0.026 3.974 21 C -0.108 4.108 22 C -0.076 4.076 23 C -0.145 4.145 24 C 0.380 3.620 25 O -0.409 6.409 26 O -0.322 6.322 27 C -0.009 4.009 28 C -0.333 4.333 29 S 0.313 5.687 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.273 0.727 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.667 -10.971 0.827 13.410 hybrid contribution -0.683 1.139 -0.031 1.328 sum -8.349 -9.832 0.796 12.924 Atomic orbital electron populations 1.70041 1.06040 1.28275 1.43157 1.25391 0.95922 0.99109 0.95983 0.85592 0.79189 0.79864 0.78520 1.18895 1.19887 1.19873 1.21510 0.92113 0.80436 1.52860 0.88483 1.83881 1.34863 1.11663 1.74991 1.19477 0.90188 0.87233 0.91320 1.21166 0.93469 0.99375 1.11259 1.20955 0.98802 0.92298 0.95149 1.20570 0.94256 0.97172 1.11963 1.20969 0.93600 0.96279 0.95286 1.17994 0.91922 0.91291 1.16592 1.22440 0.92985 0.97763 0.83493 1.20847 0.86173 0.99292 1.16781 1.25820 0.98365 0.88257 0.93819 1.66508 1.01747 1.31502 1.20860 1.19403 0.90103 0.90932 0.96981 1.20496 0.89706 0.99736 1.00902 1.20816 0.96618 0.94437 0.95703 1.18709 0.88934 0.94541 1.12328 1.20627 0.86249 0.83116 0.71974 1.90898 1.84807 1.18678 1.46558 1.84575 1.19649 1.42502 1.85462 1.20307 0.88281 0.99776 0.92495 1.23536 0.98131 0.97237 1.14423 1.84859 0.96103 1.12298 1.75471 0.91527 0.85054 0.87067 0.87120 0.86294 0.84148 0.84562 0.83703 0.83584 0.72739 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.06 13.67 55.48 0.76 -22.30 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.06 29.55 -169.99 -5.02 14.04 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.10 9.49 30.89 0.29 -9.80 16 8 H 0.10 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.15 -4.00 8.94 0.77 0.01 -4.00 16 10 C 0.18 3.87 6.66 -38.55 -0.26 3.61 16 11 C -0.23 -4.58 9.16 -39.45 -0.36 -4.94 16 12 C -0.05 -0.87 10.03 -39.51 -0.40 -1.27 16 13 C -0.22 -3.38 10.02 -39.61 -0.40 -3.78 16 14 C -0.04 -0.69 9.41 -39.14 -0.37 -1.06 16 15 C -0.18 -3.40 5.88 -104.90 -0.62 -4.02 16 16 C 0.06 1.10 9.27 -37.22 -0.35 0.75 16 17 C -0.21 -3.31 9.55 -37.47 -0.36 -3.67 16 18 C 0.21 3.46 7.28 -15.16 -0.11 3.35 16 19 N -0.49 -8.90 9.96 -8.77 -0.09 -8.99 16 20 C 0.15 2.41 6.92 -85.08 -0.59 1.82 16 21 C -0.09 -1.18 10.04 -39.22 -0.39 -1.57 16 22 C -0.05 -0.61 9.51 -39.75 -0.38 -0.98 16 23 C -0.14 -1.66 5.87 -105.00 -0.62 -2.28 16 24 C 0.54 5.87 8.26 34.45 0.28 6.16 16 25 O -0.52 -6.97 17.12 -19.28 -0.33 -7.30 16 26 O -0.51 -3.92 12.67 -40.69 -0.52 -4.43 16 27 C 0.01 0.17 9.61 -38.95 -0.37 -0.20 16 28 C -0.21 -3.07 6.52 -38.57 -0.25 -3.32 16 29 S 0.05 0.71 23.36 -107.50 -2.51 -1.80 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.13 2.55 5.64 -52.49 -0.30 2.25 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.54 6.17 -52.48 -0.32 1.22 16 35 H 0.14 3.09 7.24 -52.49 -0.38 2.71 16 36 H 0.14 1.78 6.07 -52.49 -0.32 1.46 16 37 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.15 1.27 7.59 -52.49 -0.40 0.87 16 39 H 0.41 1.26 9.11 45.56 0.42 1.68 16 40 H 0.14 1.63 7.64 -52.49 -0.40 1.23 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.97 372.73 -9.80 -40.77 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.38 Total: 8.59 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -5.33 Total: -20.20 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.67 Total: -31.29 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.84 Total: -15.73 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.97 -9.80 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225458205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.930 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds