Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47064 * 2 1 4 4 C 1.35044 * 126.39366 * 264.91212 * 3 2 1 5 5 C 1.50701 * 125.65450 * 0.07114 * 4 3 2 6 6 N 1.30503 * 108.69600 * 180.27191 * 4 3 2 7 7 C 1.34128 * 109.25719 * 359.76301 * 6 4 3 8 8 C 1.34673 * 108.01792 * 0.02562 * 7 6 4 9 9 S 1.76195 * 126.58849 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40397 * 160.13426 * 9 8 7 11 11 O 1.42095 * 106.40494 * 27.21677 * 9 8 7 12 12 N 1.65604 * 107.22319 * 273.67413 * 9 8 7 13 13 C 1.46502 * 119.99802 * 275.53678 * 12 9 8 14 14 C 1.50701 * 109.46882 * 264.99388 * 13 12 9 15 15 H 1.08007 * 119.99918 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99877 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99464 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00034 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47450 * 89.99655 * 18 16 14 20 20 H 1.48506 * 109.47126 * 210.00145 * 18 16 14 21 21 H 1.48504 * 109.47316 * 330.00063 * 18 16 14 22 22 C 1.39815 * 119.99795 * 95.52860 * 12 9 8 23 23 C 1.38875 * 120.04756 * 124.44572 * 22 12 9 24 24 C 1.38121 * 119.95027 * 180.23097 * 23 22 12 25 25 C 1.38458 * 120.05181 * 359.51578 * 24 23 22 26 26 F 1.35104 * 119.95464 * 180.23479 * 25 24 23 27 27 C 1.38462 * 120.09749 * 0.46093 * 25 24 23 28 28 C 1.38122 * 120.04977 * 359.79474 * 27 25 24 29 29 H 1.09002 * 109.46630 * 305.09471 * 1 2 3 30 30 H 1.08999 * 109.47550 * 65.09017 * 1 2 3 31 31 H 1.08993 * 109.47179 * 185.09530 * 1 2 3 32 32 H 1.08999 * 109.46922 * 240.00504 * 2 1 3 33 33 H 1.08998 * 109.47708 * 120.00117 * 2 1 3 34 34 H 1.09008 * 109.46853 * 270.25345 * 5 4 3 35 35 H 1.08998 * 109.47139 * 30.25219 * 5 4 3 36 36 H 1.09004 * 109.47121 * 150.25808 * 5 4 3 37 37 H 1.08004 * 125.99142 * 180.02562 * 7 6 4 38 38 H 1.08997 * 109.47514 * 24.99496 * 13 12 9 39 39 H 1.09003 * 109.47007 * 144.99429 * 13 12 9 40 40 H 0.97001 * 119.99400 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.02921 * 359.94917 * 23 22 12 42 42 H 1.08007 * 119.97140 * 179.74206 * 24 23 22 43 43 H 1.08006 * 119.98045 * 179.77467 * 27 25 24 44 44 H 1.08001 * 120.02670 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3763 2.1046 -1.0828 5 6 2.3399 1.6248 -2.5109 6 7 2.7631 3.2865 -0.6871 7 6 2.6619 3.3610 0.6483 8 6 2.1952 2.1802 1.0972 9 16 1.8791 1.7452 2.7751 10 8 0.9904 0.6370 2.7418 11 8 1.5844 2.9575 3.4553 12 7 3.3012 1.1851 3.4127 13 6 3.6856 -0.2163 3.2268 14 6 3.2494 -1.0199 4.4247 15 1 2.7368 -0.5352 5.2426 16 6 3.5048 -2.3738 4.4767 17 7 3.1246 -3.0750 5.5224 18 14 4.3921 -3.2118 3.0626 19 1 5.8564 -3.1782 3.3075 20 1 3.9394 -4.6226 2.9607 21 1 4.0858 -2.5010 1.7952 22 6 4.1350 2.0498 4.1283 23 6 4.5190 1.7313 5.4243 24 6 5.3389 2.5892 6.1311 25 6 5.7860 3.7612 5.5449 26 9 6.5917 4.5967 6.2363 27 6 5.4047 4.0806 4.2527 28 6 4.5807 3.2282 3.5440 29 1 -0.3633 0.5909 0.8409 30 1 -0.3634 0.4328 -0.9320 31 1 -0.3633 -1.0235 0.0913 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2945 1.1629 -2.7634 35 1 1.5401 0.8936 -2.6283 36 1 2.1591 2.4709 -3.1739 37 1 2.9110 4.2178 1.2569 38 1 3.2047 -0.6092 2.3311 39 1 4.7680 -0.2848 3.1178 40 1 3.3040 -4.0276 5.5587 41 1 4.1733 0.8156 5.8809 42 1 5.6344 2.3439 7.1405 43 1 5.7516 4.9971 3.7985 44 1 4.2832 3.4779 2.5362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225792186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = -21.461703 kcal Electronic energy + Delta-G solvation = -32505.835740 eV Core-core repulsion = 28080.379539 eV Total energy + Delta-G solvation = -4425.456201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.64919 -42.29531 -39.16124 -37.08962 -35.62666 -35.50806 -34.97801 -32.66930 -32.13125 -30.92680 -30.18876 -29.45978 -27.45542 -27.23644 -23.87300 -22.90904 -22.70711 -22.13983 -21.72438 -20.24433 -18.82115 -18.17025 -17.48920 -17.30435 -16.95964 -16.31865 -16.00424 -15.85126 -15.49992 -15.31600 -14.94128 -14.62745 -14.35801 -14.06050 -13.75836 -13.59981 -13.32731 -13.24574 -13.18694 -13.00129 -12.79002 -12.67625 -12.55400 -12.42263 -12.24474 -12.13181 -11.82622 -11.72574 -11.56863 -11.44924 -11.25401 -11.09890 -10.99119 -10.71123 -10.44529 -10.18264 -9.84857 -9.71592 -9.13688 -8.86642 -8.83426 -8.78930 -7.87996 -6.28190 -4.29688 0.50669 1.36777 1.41212 1.50012 2.54729 2.78822 3.09277 3.13936 3.17345 3.28245 3.77675 4.00647 4.14726 4.18313 4.44684 4.49958 4.54931 4.75601 4.91306 4.95246 4.97757 5.04771 5.11802 5.18274 5.20702 5.29699 5.40194 5.50350 5.54066 5.58037 5.66123 5.71553 5.95239 6.04956 6.14791 6.18637 6.30404 6.38009 6.43245 6.58165 6.59976 6.84792 6.91421 6.93560 7.29287 7.37468 7.73254 8.24943 8.74374 9.28684 10.84192 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.007292 B = 0.005645 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3838.815305 B = 4958.822264 C = 7501.439504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.078 3.922 3 N -0.396 5.396 4 C 0.243 3.757 5 C -0.074 4.074 6 N -0.498 5.498 7 C 0.093 3.907 8 C -0.599 4.599 9 S 2.706 3.294 10 O -0.926 6.926 11 O -0.945 6.945 12 N -0.927 5.927 13 C 0.225 3.775 14 C -0.537 4.537 15 H 0.086 0.914 16 C 0.081 3.919 17 N -0.884 5.884 18 Si 0.867 3.133 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.163 3.837 23 C -0.079 4.079 24 C -0.138 4.138 25 C 0.079 3.921 26 F -0.146 7.146 27 C -0.137 4.137 28 C -0.120 4.120 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.184 0.816 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.268 0.732 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 8.112 -11.579 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.043 4.043 3 N -0.076 5.076 4 C -0.022 4.022 5 C -0.133 4.133 6 N -0.217 5.217 7 C -0.063 4.063 8 C -0.794 4.794 9 S 2.792 3.208 10 O -0.916 6.916 11 O -0.934 6.934 12 N -0.757 5.757 13 C 0.103 3.897 14 C -0.576 4.576 15 H 0.104 0.896 16 C -0.124 4.124 17 N -0.522 5.522 18 Si 0.694 3.306 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.193 1.193 22 C 0.068 3.932 23 C -0.100 4.100 24 C -0.158 4.158 25 C 0.059 3.941 26 F -0.125 7.125 27 C -0.156 4.156 28 C -0.141 4.141 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.201 0.799 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.179 0.821 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.156 8.365 -11.659 14.350 hybrid contribution 0.827 -1.003 -0.639 1.449 sum 0.982 7.361 -12.298 14.366 Atomic orbital electron populations 1.22121 0.92822 1.04437 1.02833 1.22382 0.97281 0.78551 1.06083 1.45196 1.45445 1.12274 1.04692 1.23824 0.98365 0.88146 0.91815 1.20324 1.03651 1.02566 0.86741 1.70319 1.22025 1.17934 1.11451 1.22296 0.96901 0.95601 0.91498 1.34111 1.26525 1.02504 1.16294 1.01968 0.73053 0.73590 0.72181 1.93618 1.59954 1.51947 1.86060 1.93595 1.82382 1.46894 1.70555 1.55315 1.38491 1.18337 1.63573 1.19710 0.96926 0.74696 0.98328 1.21253 1.39428 0.93125 1.03801 0.89649 1.24805 0.95010 0.96989 0.95552 1.69866 1.45707 1.07869 1.28710 0.87005 0.80691 0.79751 0.83165 1.19759 1.20590 1.19250 1.17378 0.94248 0.90307 0.91237 1.21594 0.95816 1.00395 0.92152 1.21104 0.99932 0.93476 1.01295 1.17673 0.94942 0.90225 0.91255 1.91462 1.71132 1.70661 1.79202 1.20772 1.00458 1.00992 0.93390 1.21050 0.98215 0.95108 0.99742 0.90345 0.92588 0.89733 0.88272 0.86961 0.89499 0.90248 0.88696 0.79939 0.94874 0.94473 0.92212 0.82074 0.84462 0.84640 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.92 37.16 0.37 -1.61 16 2 C 0.08 1.01 5.75 -4.04 -0.02 0.99 16 3 N -0.40 -5.77 2.75 -112.94 -0.31 -6.08 16 4 C 0.24 3.24 7.90 -155.41 -1.23 2.01 16 5 C -0.07 -0.62 9.94 36.01 0.36 -0.26 16 6 N -0.50 -7.58 11.25 -10.81 -0.12 -7.70 16 7 C 0.09 1.43 10.42 -17.81 -0.19 1.25 16 8 C -0.60 -9.78 6.99 -16.56 -0.12 -9.90 16 9 S 2.71 50.93 5.37 -107.50 -0.58 50.36 16 10 O -0.93 -19.10 13.48 -57.18 -0.77 -19.87 16 11 O -0.94 -18.84 16.63 -57.18 -0.95 -19.79 16 12 N -0.93 -17.98 2.88 -59.78 -0.17 -18.15 16 13 C 0.22 4.79 4.00 -5.19 -0.02 4.77 16 14 C -0.54 -13.58 8.62 -34.44 -0.30 -13.88 16 15 H 0.09 2.35 7.32 -52.48 -0.38 1.97 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.88 -24.87 13.96 55.43 0.77 -24.10 16 18 Si 0.87 19.16 27.47 -169.99 -4.67 14.49 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -5.45 6.54 56.52 0.37 -5.08 16 22 C 0.16 2.96 5.05 -83.74 -0.42 2.54 16 23 C -0.08 -1.40 9.49 -39.39 -0.37 -1.78 16 24 C -0.14 -2.14 10.02 -39.54 -0.40 -2.53 16 25 C 0.08 1.18 7.30 -39.42 -0.29 0.89 16 26 F -0.15 -2.12 17.27 2.25 0.04 -2.08 16 27 C -0.14 -1.93 10.02 -39.54 -0.40 -2.33 16 28 C -0.12 -1.87 9.09 -39.39 -0.36 -2.23 16 29 H 0.08 1.13 6.75 -51.93 -0.35 0.78 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.93 7.43 -51.93 -0.39 0.55 16 33 H 0.11 1.72 5.35 -51.93 -0.28 1.44 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.51 7.60 -51.93 -0.39 0.11 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.18 2.40 7.17 -52.48 -0.38 2.03 16 38 H 0.03 0.69 5.13 -51.93 -0.27 0.42 16 39 H 0.04 0.77 7.51 -51.93 -0.39 0.38 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.16 3.14 6.12 -52.48 -0.32 2.82 16 42 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.13 1.75 5.65 -52.49 -0.30 1.45 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -31.79 374.79 -9.73 -41.52 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.15 Total: 5.80 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.48 Total: -20.04 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.17 Total: -56.03 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.72 Total: -39.66 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.67 Total: 14.49 kcal Atomic # 16 Polarization: 50.93 SS G_CDS: -0.58 Total: 50.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.79 -9.73 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225792186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.061 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds