Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48501 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47227 * 300.00108 * 3 2 1 6 6 H 1.48501 * 109.47239 * 59.99806 * 3 2 1 7 7 C 1.39893 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99894 * 191.99620 * 7 2 1 9 9 C 1.41135 * 120.00147 * 11.98827 * 7 2 1 10 10 C 1.40885 * 120.15867 * 30.36460 * 9 7 2 11 11 C 1.36357 * 119.82684 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.17076 * 0.27339 * 11 10 9 13 13 N 1.39134 * 119.84069 * 179.72824 * 12 11 10 14 14 C 1.34776 * 120.00232 * 225.94026 * 13 12 11 15 15 S 1.71199 * 119.99762 * 356.32176 * 14 13 12 16 16 N 1.34776 * 119.99951 * 176.32338 * 14 13 12 17 17 C 1.46506 * 119.99805 * 183.74397 * 16 14 13 18 18 C 1.50700 * 110.43570 * 53.01806 * 17 16 14 19 19 C 1.38231 * 120.00591 * 206.41074 * 18 17 16 20 20 C 1.38225 * 120.00386 * 179.74703 * 19 18 17 21 21 C 1.38235 * 119.99977 * 0.54801 * 20 19 18 22 22 C 1.38231 * 120.00312 * 359.70010 * 21 20 19 23 23 C 1.38238 * 119.99620 * 0.03050 * 22 21 20 24 24 C 1.54890 * 110.48634 * 290.33554 * 17 16 14 25 25 C 1.54890 * 102.74655 * 279.26287 * 24 17 16 26 26 C 1.54265 * 104.19800 * 322.05893 * 25 24 17 27 27 C 1.53879 * 106.59661 * 23.60862 * 26 25 24 28 28 C 1.39514 * 120.32502 * 359.44513 * 12 11 10 29 29 C 1.36363 * 120.16661 * 0.56042 * 28 12 11 30 30 H 0.97000 * 119.99805 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.08391 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.91571 * 180.02562 * 11 10 9 33 33 H 0.97002 * 120.00102 * 45.93572 * 13 12 11 34 34 H 0.96994 * 120.00653 * 3.74361 * 16 14 13 35 35 H 1.08003 * 119.99045 * 359.97438 * 19 18 17 36 36 H 1.08005 * 120.00147 * 180.27564 * 20 19 18 37 37 H 1.08001 * 120.00265 * 179.73036 * 21 20 19 38 38 H 1.07998 * 120.00645 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.00145 * 179.97438 * 23 22 21 40 40 H 1.09001 * 110.75378 * 37.58211 * 24 17 16 41 41 H 1.08997 * 110.75104 * 160.94970 * 24 17 16 42 42 H 1.08997 * 110.48189 * 203.37712 * 25 24 17 43 43 H 1.08997 * 110.48319 * 80.73739 * 25 24 17 44 44 H 1.09004 * 110.03062 * 264.32863 * 26 25 24 45 45 H 1.08999 * 110.03315 * 142.89658 * 26 25 24 46 46 H 1.08999 * 110.03035 * 240.71099 * 27 26 25 47 47 H 1.08999 * 110.02971 * 119.28958 * 27 26 25 48 48 H 1.08004 * 119.92053 * 180.25160 * 28 12 11 49 49 H 1.07995 * 120.08459 * 179.70055 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0706 -1.2218 0.1939 9 6 1.3257 -2.4204 -0.2550 10 6 0.1939 -2.4311 -1.0938 11 6 -0.4608 -3.6027 -1.3346 12 6 -0.0159 -4.7878 -0.7482 13 7 -0.6924 -5.9785 -0.9940 14 6 -0.9883 -6.8085 0.0258 15 16 -0.4498 -6.4443 1.6096 16 7 -1.7079 -7.9251 -0.2012 17 6 -2.0996 -8.7845 0.9188 18 6 -2.8013 -7.9778 1.9807 19 6 -2.7756 -8.3974 3.2975 20 6 -3.4148 -7.6546 4.2723 21 6 -4.0895 -6.4981 3.9287 22 6 -4.1196 -6.0810 2.6111 23 6 -3.4756 -6.8209 1.6371 24 6 -0.8611 -9.5029 1.5097 25 6 -0.6540 -10.6866 0.5324 26 6 -2.0853 -11.1425 0.1816 27 6 -3.0045 -9.9331 0.4273 28 6 1.1077 -4.7860 0.0789 29 6 1.7725 -3.6220 0.3290 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1548 -1.5135 -1.5443 32 1 -1.3284 -3.6127 -1.9777 33 1 -0.9512 -6.2112 -1.8994 34 1 -1.9666 -8.1599 -1.1061 35 1 -2.2529 -9.3038 3.5652 36 1 -3.3909 -7.9802 5.3019 37 1 -4.5926 -5.9200 4.6897 38 1 -4.6470 -5.1776 2.3425 39 1 -3.4995 -6.4953 0.6076 40 1 0.0064 -8.8429 1.5065 41 1 -1.0686 -9.8651 2.5166 42 1 -0.1056 -11.4925 1.0201 43 1 -0.1291 -10.3544 -0.3633 44 1 -2.3807 -11.9725 0.8235 45 1 -2.1355 -11.4432 -0.8650 46 1 -3.7459 -10.1762 1.1883 47 1 -3.5008 -9.6469 -0.5000 48 1 1.4488 -5.7079 0.5263 49 1 2.6392 -3.6213 0.9734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225852946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = 74.880463 kcal Electronic energy + Delta-G solvation = -30487.119943 eV Core-core repulsion = 26697.869682 eV Total energy + Delta-G solvation = -3789.250261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.60574 -38.72492 -37.74344 -36.48903 -34.25441 -32.93381 -31.18534 -30.56191 -29.63322 -29.02764 -28.86661 -27.14051 -25.01389 -23.61118 -22.70860 -22.03840 -21.10591 -20.98970 -20.33777 -19.74484 -17.93154 -17.49967 -17.29644 -16.81967 -15.82834 -15.37813 -15.21312 -15.05872 -14.94283 -14.31719 -14.21449 -13.99008 -13.73049 -13.44175 -13.18679 -12.85936 -12.73014 -12.55197 -12.08749 -11.99530 -11.84168 -11.61119 -11.47791 -11.41564 -11.31954 -11.19417 -11.15355 -10.94515 -10.79152 -10.76879 -10.67693 -10.44251 -10.40452 -9.82187 -9.52397 -9.27397 -9.02386 -8.57110 -8.46860 -7.62227 -7.28679 -6.93077 -6.73680 -6.00669 -4.36099 1.68011 1.76801 1.79814 2.45883 2.77342 3.04251 3.07620 3.13155 3.14199 3.27662 3.92748 3.95174 4.04424 4.36602 4.47222 4.55314 4.62652 4.93644 5.11524 5.21663 5.23533 5.30789 5.36125 5.40040 5.48036 5.58356 5.65566 5.67745 5.72995 5.84085 5.89475 5.90815 6.12104 6.15037 6.26267 6.33846 6.35275 6.44535 6.45109 6.62444 6.78485 6.84748 6.87887 6.96715 7.06093 7.11491 7.25241 7.32035 7.34152 7.59502 7.67306 7.98202 8.07751 8.10722 8.29726 8.60448 8.87303 8.95342 10.18975 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.002724 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.271883 B =10278.275794 C =11248.460038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.122 3.878 10 C -0.159 4.159 11 C -0.093 4.093 12 C -0.036 4.036 13 N -0.595 5.595 14 C 0.539 3.461 15 S -0.608 6.608 16 N -0.691 5.691 17 C 0.228 3.772 18 C -0.037 4.037 19 C -0.111 4.111 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.094 4.094 24 C -0.131 4.131 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.025 4.025 29 C -0.220 4.220 30 H 0.280 0.720 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.388 0.612 34 H 0.391 0.609 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -18.409 -1.357 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.120 3.880 10 C -0.179 4.179 11 C -0.114 4.114 12 C -0.128 4.128 13 N -0.214 5.214 14 C 0.182 3.818 15 S -0.474 6.474 16 N -0.324 5.324 17 C 0.142 3.858 18 C -0.040 4.040 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.170 4.170 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.047 4.047 29 C -0.241 4.241 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.131 0.869 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.234 -17.960 -0.204 19.759 hybrid contribution -0.331 0.663 -1.640 1.800 sum -8.565 -17.297 -1.844 19.389 Atomic orbital electron populations 1.69844 1.07474 1.29097 1.35390 1.25934 0.94826 1.01328 0.92391 0.86226 0.80898 0.80872 0.78532 1.18371 1.19794 1.19927 1.19640 0.96420 0.90670 1.41697 0.90222 1.17717 0.90794 0.92262 0.87274 1.20777 0.99660 0.95688 1.01798 1.20172 0.98405 0.91940 1.00854 1.16865 0.98940 0.82653 1.14374 1.41980 1.53407 1.19219 1.06784 1.22486 0.82490 0.82392 0.94397 1.93254 1.68237 1.83202 1.02703 1.44894 1.54258 1.23053 1.10154 1.19909 0.94295 0.87580 0.84066 1.19288 0.95638 0.95262 0.93822 1.20702 1.00021 1.00392 0.91872 1.20922 0.98384 0.95620 0.98598 1.20959 1.00619 0.97006 0.96041 1.20923 0.99735 0.98984 0.93269 1.20636 0.97384 0.94475 0.98810 1.23198 0.99087 0.96150 0.98534 1.22421 0.96148 0.98317 0.99636 1.22173 0.95222 0.97437 1.01356 1.22479 0.97885 0.93666 1.01920 1.20441 0.91876 0.98469 0.93882 1.20626 1.04106 0.93035 1.06300 0.90918 0.86406 0.89656 0.77630 0.77332 0.86423 0.86792 0.86918 0.86916 0.87896 0.87999 0.89863 0.91434 0.92004 0.91388 0.91901 0.89591 0.91209 0.86928 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.53 11.01 55.55 0.61 -19.92 16 2 C 0.07 1.82 5.21 -17.34 -0.09 1.73 16 3 Si 0.91 18.65 29.58 -169.99 -5.03 13.62 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.45 -11.98 9.03 -37.86 -0.34 -12.33 16 8 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 9 C 0.12 3.24 5.52 -106.80 -0.59 2.65 16 10 C -0.16 -4.02 8.59 -39.26 -0.34 -4.36 16 11 C -0.09 -2.08 9.90 -39.79 -0.39 -2.48 16 12 C -0.04 -0.76 5.91 -83.60 -0.49 -1.25 16 13 N -0.59 -9.80 5.28 -11.28 -0.06 -9.86 16 14 C 0.54 8.75 6.20 -86.92 -0.54 8.21 16 15 S -0.61 -12.56 20.26 -107.50 -2.18 -14.74 16 16 N -0.69 -8.11 4.39 -48.83 -0.21 -8.33 16 17 C 0.23 2.56 0.63 -131.31 -0.08 2.48 16 18 C -0.04 -0.51 2.63 -104.62 -0.28 -0.78 16 19 C -0.11 -1.46 9.16 -39.59 -0.36 -1.82 16 20 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 21 C -0.13 -1.79 10.05 -39.59 -0.40 -2.19 16 22 C -0.11 -1.69 10.05 -39.58 -0.40 -2.08 16 23 C -0.09 -1.44 7.65 -39.58 -0.30 -1.74 16 24 C -0.13 -1.51 5.24 -24.74 -0.13 -1.64 16 25 C -0.13 -1.13 6.79 -25.07 -0.17 -1.30 16 26 C -0.12 -0.89 6.80 -25.61 -0.17 -1.06 16 27 C -0.12 -0.99 6.01 -25.61 -0.15 -1.14 16 28 C -0.02 -0.58 7.78 -39.78 -0.31 -0.89 16 29 C -0.22 -5.52 9.74 -39.26 -0.38 -5.90 16 30 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 31 H 0.12 3.07 6.38 -52.49 -0.33 2.74 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.39 4.94 8.84 -40.82 -0.36 4.58 16 34 H 0.39 3.41 8.33 -40.82 -0.34 3.07 16 35 H 0.12 1.33 5.96 -52.48 -0.31 1.01 16 36 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.10 1.60 6.93 -52.49 -0.36 1.24 16 40 H 0.10 1.52 6.01 -51.93 -0.31 1.21 16 41 H 0.08 0.91 5.71 -51.93 -0.30 0.61 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.69 7.83 -51.93 -0.41 0.29 16 47 H 0.07 0.50 7.80 -51.93 -0.41 0.09 16 48 H 0.11 2.59 6.20 -46.79 -0.29 2.30 16 49 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -30.81 393.81 -14.03 -44.84 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -6.78 Total: 16.29 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -6.32 Total: -27.84 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.34 Total: -38.11 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -12.56 SS G_CDS: -2.18 Total: -14.74 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.81 -14.03 -44.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225852946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.722 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds