Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86796 * 120.00120 * 2 1 4 4 H 1.48502 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47579 * 300.00363 * 3 2 1 6 6 H 1.48505 * 109.46875 * 60.00633 * 3 2 1 7 7 C 1.39886 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99808 * 187.62387 * 7 2 1 9 9 C 1.41137 * 120.00075 * 7.63098 * 7 2 1 10 10 C 1.40877 * 120.16628 * 31.62862 * 9 7 2 11 11 C 1.36353 * 119.83488 * 180.27092 * 10 9 7 12 12 C 1.39518 * 120.16598 * 359.46504 * 11 10 9 13 13 N 1.39138 * 119.83928 * 180.27356 * 12 11 10 14 14 C 1.34780 * 119.99817 * 41.77010 * 13 12 11 15 15 S 1.71195 * 120.00215 * 5.59118 * 14 13 12 16 16 N 1.34777 * 120.00003 * 185.59228 * 14 13 12 17 17 C 1.46493 * 120.00175 * 185.49063 * 16 14 13 18 18 C 1.50700 * 110.43600 * 300.71315 * 17 16 14 19 19 C 1.38225 * 119.61500 * 304.39129 * 18 17 16 20 20 C 1.38634 * 119.15678 * 179.74942 * 19 18 17 21 21 C 1.38669 * 118.42334 * 0.51196 * 20 19 18 22 22 C 1.38187 * 119.16227 * 359.72980 * 21 20 19 23 23 N 1.31855 * 119.61755 * 124.66004 * 18 17 16 24 24 C 1.54885 * 110.48839 * 178.17315 * 17 16 14 25 25 C 1.55243 * 102.58750 * 279.18787 * 24 17 16 26 26 C 1.54264 * 104.23002 * 322.08376 * 25 24 17 27 27 C 1.53873 * 106.60198 * 23.61076 * 26 25 24 28 28 C 1.39515 * 120.32370 * 0.25034 * 12 11 10 29 29 C 1.36360 * 120.16660 * 0.02562 * 28 12 11 30 30 H 0.96999 * 119.99573 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.08446 * 0.02562 * 10 9 7 32 32 H 1.07996 * 119.92156 * 179.73370 * 11 10 9 33 33 H 0.96996 * 120.00045 * 221.77533 * 13 12 11 34 34 H 0.97004 * 119.99882 * 5.48379 * 16 14 13 35 35 H 1.08000 * 120.42324 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.78905 * 180.21681 * 20 19 18 37 37 H 1.08000 * 120.42050 * 179.70349 * 21 20 19 38 38 H 1.07998 * 119.61731 * 180.02562 * 22 21 20 39 39 H 1.09002 * 110.75846 * 37.57811 * 24 17 16 40 40 H 1.08999 * 110.76302 * 160.95136 * 24 17 16 41 41 H 1.09000 * 110.47042 * 203.39514 * 25 24 17 42 42 H 1.08996 * 110.47249 * 80.77291 * 25 24 17 43 43 H 1.09003 * 110.03317 * 264.32591 * 26 25 24 44 44 H 1.09000 * 110.03417 * 142.89874 * 26 25 24 45 45 H 1.09000 * 110.03375 * 240.72270 * 27 26 25 46 46 H 1.09000 * 110.07431 * 119.30793 * 27 26 25 47 47 H 1.07998 * 119.91221 * 180.02562 * 28 12 11 48 48 H 1.08002 * 120.08105 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 -0.0006 5 1 1.8842 2.3965 -1.2123 6 1 1.8842 2.3963 1.2126 7 6 2.0082 -1.2115 -0.0005 8 1 3.0810 -1.2157 0.1235 9 6 1.3118 -2.4283 -0.1634 10 6 0.1419 -2.4750 -0.9468 11 6 -0.5286 -3.6529 -1.0950 12 6 -0.0526 -4.8125 -0.4824 13 7 -0.7391 -6.0121 -0.6429 14 6 -1.2351 -6.3484 -1.8502 15 16 -0.8989 -5.3722 -3.2158 16 7 -1.9957 -7.4531 -1.9823 17 6 -2.4347 -7.8855 -3.3113 18 6 -3.2492 -6.8045 -3.9740 19 6 -4.3639 -6.2987 -3.3321 20 6 -5.1033 -5.3007 -3.9481 21 6 -4.6980 -4.8544 -5.1969 22 6 -3.5754 -5.4112 -5.7793 23 7 -2.8931 -6.3559 -5.1617 24 6 -3.2531 -9.1967 -3.2120 25 6 -2.1457 -10.2795 -3.1062 26 6 -1.0364 -9.7814 -4.0556 27 6 -1.2202 -8.2593 -4.1860 28 6 1.1086 -4.7753 0.2900 29 6 1.7866 -3.6033 0.4518 30 1 -0.4849 0.8401 0.0004 31 1 -0.2252 -1.5792 -1.4254 32 1 -1.4281 -3.6894 -1.6917 33 1 -0.8608 -6.6063 0.1141 34 1 -2.2523 -7.9620 -1.1974 35 1 -4.6532 -6.6736 -2.3615 36 1 -5.9769 -4.8841 -3.4688 37 1 -5.2530 -4.0816 -5.7080 38 1 -3.2530 -5.0688 -6.7515 39 1 -3.8805 -9.1939 -2.3206 40 1 -3.8547 -9.3456 -4.1086 41 1 -2.5251 -11.2464 -3.4369 42 1 -1.7723 -10.3445 -2.0843 43 1 -1.1400 -10.2551 -5.0319 44 1 -0.0563 -10.0045 -3.6342 45 1 -1.4131 -7.9942 -5.2256 46 1 -0.3293 -7.7429 -3.8284 47 1 1.4714 -5.6770 0.7609 48 1 2.6857 -3.5761 1.0497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225853127.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = 87.572948 kcal Electronic energy + Delta-G solvation = -30593.880259 eV Core-core repulsion = 26739.754474 eV Total energy + Delta-G solvation = -3854.125785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.74477 -39.09576 -38.22141 -36.44215 -34.20561 -32.94550 -32.27532 -31.28230 -29.55910 -29.07903 -28.89141 -27.46110 -25.04395 -23.62985 -23.33364 -22.90659 -21.34403 -20.99576 -20.33989 -19.84433 -18.06102 -17.52777 -17.32455 -16.76952 -16.03130 -15.76222 -15.37961 -15.20218 -14.95726 -14.84164 -14.26207 -14.11148 -13.93540 -13.48353 -13.39716 -13.03039 -12.83859 -12.60055 -12.14347 -12.10802 -11.84541 -11.74398 -11.48723 -11.35115 -11.30012 -11.23268 -11.17560 -11.12111 -10.86518 -10.60347 -10.46595 -10.44178 -9.82194 -9.61886 -9.52086 -9.33373 -9.17634 -8.94667 -8.78881 -7.66185 -7.32192 -6.85444 -6.71296 -6.05364 -4.36410 1.31104 1.56606 1.73220 2.47295 2.81545 3.04756 3.09232 3.12941 3.14444 3.24020 3.88915 3.94845 4.07478 4.20807 4.40557 4.48254 4.66655 4.84613 4.90126 5.04632 5.21933 5.25423 5.34143 5.36715 5.41152 5.52364 5.57170 5.67178 5.69928 5.78939 5.83074 5.88144 6.02907 6.07476 6.17398 6.32754 6.34174 6.37607 6.50858 6.55131 6.69975 6.93344 6.98194 7.05125 7.10715 7.22481 7.29579 7.59848 7.67598 7.91698 8.07234 8.17642 8.28349 8.32779 8.65053 8.88069 8.96330 10.22009 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.002835 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.839571 B = 9874.514826 C =11172.182607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.455 4.455 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.151 4.151 11 C -0.042 4.042 12 C -0.026 4.026 13 N -0.595 5.595 14 C 0.538 3.462 15 S -0.605 6.605 16 N -0.689 5.689 17 C 0.236 3.764 18 C 0.165 3.835 19 C -0.172 4.172 20 C -0.075 4.075 21 C -0.179 4.179 22 C 0.106 3.894 23 N -0.435 5.435 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.086 4.086 29 C -0.219 4.219 30 H 0.280 0.720 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.388 0.612 34 H 0.391 0.609 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 -16.714 -4.621 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.172 4.172 11 C -0.063 4.063 12 C -0.118 4.118 13 N -0.214 5.214 14 C 0.181 3.819 15 S -0.471 6.471 16 N -0.322 5.322 17 C 0.149 3.851 18 C 0.025 3.975 19 C -0.194 4.194 20 C -0.101 4.101 21 C -0.200 4.200 22 C -0.054 4.054 23 N -0.143 5.143 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.167 4.167 27 C -0.159 4.159 28 C -0.107 4.107 29 C -0.240 4.240 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.126 0.874 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.976 -16.191 -6.008 19.944 hybrid contribution -0.766 0.344 2.120 2.280 sum -10.741 -15.846 -3.888 19.534 Atomic orbital electron populations 1.69826 1.07406 1.29024 1.35971 1.25923 0.94894 1.01308 0.92426 0.86191 0.80765 0.80831 0.78513 1.18444 1.19722 1.20007 1.19619 0.95385 0.90389 1.43056 0.90337 1.17731 0.91493 0.91938 0.87176 1.20911 0.98556 0.96302 1.01447 1.20484 0.99213 0.90924 0.95721 1.16919 0.98254 0.82900 1.13774 1.42035 1.51290 1.21089 1.07014 1.22522 0.82824 0.85534 0.90986 1.93380 1.75064 1.55018 1.23674 1.44850 1.51717 1.26183 1.09491 1.19778 0.94378 0.90387 0.80589 1.20501 0.90912 0.94670 0.91436 1.21610 0.97580 0.99470 1.00716 1.21365 0.98884 0.95144 0.94718 1.21998 0.99428 1.01767 0.96776 1.22597 0.90940 0.92717 0.99106 1.67358 1.26657 1.11015 1.09236 1.22852 0.97441 0.92329 1.03099 1.22441 0.95631 0.97994 1.00004 1.22245 0.98339 0.96775 0.99293 1.22580 0.97844 0.93416 1.02015 1.19984 0.93448 0.97105 1.00153 1.20554 1.02785 0.93553 1.07062 0.90946 0.86116 0.87427 0.77649 0.77257 0.86407 0.85674 0.85532 0.83357 0.90828 0.89235 0.91260 0.91781 0.91758 0.92078 0.88108 0.89447 0.89474 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.73 10.87 55.54 0.60 -20.13 16 2 C 0.07 1.81 5.29 -17.34 -0.09 1.71 16 3 Si 0.91 18.89 29.57 -169.99 -5.03 13.86 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.45 -12.05 9.04 -37.87 -0.34 -12.39 16 8 H 0.08 2.00 7.86 -52.49 -0.41 1.59 16 9 C 0.12 3.18 5.53 -106.80 -0.59 2.59 16 10 C -0.15 -4.05 8.58 -39.26 -0.34 -4.38 16 11 C -0.04 -1.02 7.77 -39.78 -0.31 -1.33 16 12 C -0.03 -0.56 5.92 -83.59 -0.49 -1.05 16 13 N -0.60 -10.03 5.29 -11.28 -0.06 -10.09 16 14 C 0.54 9.03 7.02 -86.91 -0.61 8.42 16 15 S -0.60 -12.94 20.61 -107.50 -2.22 -15.16 16 16 N -0.69 -8.33 4.91 -48.83 -0.24 -8.57 16 17 C 0.24 2.79 0.55 -131.31 -0.07 2.72 16 18 C 0.17 2.30 3.56 -82.59 -0.29 2.00 16 19 C -0.17 -2.23 9.37 -39.44 -0.37 -2.60 16 20 C -0.07 -0.92 10.18 -39.28 -0.40 -1.32 16 21 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 22 C 0.11 1.45 11.18 -17.55 -0.20 1.26 16 23 N -0.43 -6.62 7.31 -9.47 -0.07 -6.69 16 24 C -0.12 -0.98 5.69 -24.55 -0.14 -1.12 16 25 C -0.12 -0.94 6.80 -24.88 -0.17 -1.11 16 26 C -0.13 -1.26 6.80 -25.62 -0.17 -1.43 16 27 C -0.12 -1.57 5.07 -25.61 -0.13 -1.70 16 28 C -0.09 -1.86 9.90 -39.78 -0.39 -2.26 16 29 C -0.22 -5.27 9.74 -39.26 -0.38 -5.65 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.12 3.41 6.32 -52.49 -0.33 3.08 16 32 H 0.11 2.70 6.24 -49.06 -0.31 2.39 16 33 H 0.39 5.03 8.85 -40.82 -0.36 4.66 16 34 H 0.39 3.42 8.52 -40.82 -0.35 3.07 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 1.46 6.64 -51.93 -0.34 1.11 16 46 H 0.09 1.45 6.16 -51.93 -0.32 1.13 16 47 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 48 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -31.90 393.90 -13.59 -45.49 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.62 Total: 15.60 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -5.89 Total: -20.26 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.23 Total: -45.47 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: -12.94 SS G_CDS: -2.22 Total: -15.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.90 -13.59 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225853127.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.062 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds