Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46871 * 299.99536 * 3 2 1 6 6 H 1.48501 * 109.47031 * 59.99622 * 3 2 1 7 7 C 1.39884 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00295 * 190.67635 * 7 2 1 9 9 C 1.41142 * 119.99737 * 10.67681 * 7 2 1 10 10 C 1.40882 * 120.16060 * 208.77763 * 9 7 2 11 11 C 1.36357 * 119.82954 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.16607 * 0.02562 * 11 10 9 13 13 N 1.39147 * 119.83543 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00077 * 138.22005 * 13 12 11 15 15 S 1.71201 * 119.99738 * 354.59593 * 14 13 12 16 16 N 1.34775 * 119.99966 * 174.59281 * 14 13 12 17 17 C 1.46500 * 119.99710 * 185.04065 * 16 14 13 18 18 C 1.50698 * 110.01978 * 295.54881 * 17 16 14 19 19 C 1.38645 * 120.78993 * 341.35972 * 18 17 16 20 20 C 1.38204 * 119.16362 * 180.29817 * 19 18 17 21 21 N 1.31878 * 120.76089 * 359.41047 * 20 19 18 22 22 C 1.31865 * 121.72535 * 0.62759 * 21 20 19 23 23 C 1.38207 * 120.76263 * 359.66184 * 22 21 20 24 24 C 1.54272 * 110.02983 * 56.93998 * 17 16 14 25 25 C 1.54972 * 104.15832 * 95.75213 * 24 17 16 26 26 C 1.54887 * 102.77619 * 37.89019 * 25 24 17 27 27 C 1.53875 * 110.03246 * 174.15540 * 17 16 14 28 28 C 1.39505 * 120.33018 * 0.27001 * 12 11 10 29 29 C 1.36365 * 120.16433 * 359.44345 * 28 12 11 30 30 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08199 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.91613 * 179.97438 * 11 10 9 33 33 H 0.96996 * 120.00154 * 318.22292 * 13 12 11 34 34 H 0.96997 * 119.99788 * 5.04709 * 16 14 13 35 35 H 1.08004 * 120.42032 * 0.03117 * 19 18 17 36 36 H 1.07994 * 119.62070 * 179.72509 * 20 19 18 37 37 H 1.08002 * 119.61711 * 179.67964 * 22 21 20 38 38 H 1.08008 * 120.41500 * 179.97438 * 23 22 21 39 39 H 1.08999 * 110.48628 * 214.39769 * 24 17 16 40 40 H 1.09000 * 110.48811 * 337.04051 * 24 17 16 41 41 H 1.08995 * 110.72011 * 279.57313 * 25 24 17 42 42 H 1.09002 * 110.92134 * 156.29488 * 25 24 17 43 43 H 1.09006 * 110.48031 * 203.40824 * 26 25 24 44 44 H 1.08994 * 110.49390 * 80.76199 * 26 25 24 45 45 H 1.08997 * 110.03004 * 359.95198 * 27 17 16 46 46 H 1.08992 * 110.03655 * 121.38373 * 27 17 16 47 47 H 1.07998 * 119.91909 * 179.70621 * 28 12 11 48 48 H 1.07995 * 120.07943 * 180.27401 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0742 -1.2194 0.1738 9 6 1.3208 -2.4232 -0.2254 10 6 1.7986 -3.6235 0.3367 11 6 1.1295 -4.7904 0.1137 12 6 -0.0251 -4.7979 -0.6693 13 7 -0.7021 -5.9928 -0.8929 14 6 -2.0489 -6.0226 -0.8494 15 16 -2.9213 -4.6251 -0.3836 16 7 -2.7087 -7.1524 -1.1725 17 6 -4.1725 -7.1541 -1.2324 18 6 -4.7452 -6.8879 0.1358 19 6 -3.9735 -7.0623 1.2744 20 6 -4.5346 -6.8142 2.5128 21 7 -5.7841 -6.4054 2.6175 22 6 -6.5473 -6.2293 1.5567 23 6 -6.0564 -6.4631 0.2861 24 6 -4.6618 -6.0820 -2.2279 25 6 -4.8784 -6.8622 -3.5493 26 6 -5.4561 -8.2130 -3.0587 27 6 -4.6769 -8.5086 -1.7605 28 6 -0.5008 -3.6144 -1.2343 29 6 0.1545 -2.4387 -1.0152 30 1 -0.4850 0.8400 -0.0004 31 1 2.6926 -3.6192 0.9427 32 1 1.4948 -5.7114 0.5436 33 1 -0.2049 -6.8043 -1.0801 34 1 -2.2144 -7.9645 -1.3653 35 1 -2.9481 -7.3920 1.1949 36 1 -3.9416 -6.9520 3.4048 37 1 -7.5676 -5.8983 1.6822 38 1 -6.6866 -6.3175 -0.5789 39 1 -5.5993 -5.6435 -1.8860 40 1 -3.9041 -5.3096 -2.3598 41 1 -3.9316 -7.0125 -4.0679 42 1 -5.5922 -6.3477 -4.1926 43 1 -5.2777 -8.9948 -3.7971 44 1 -6.5219 -8.1192 -2.8509 45 1 -3.8325 -9.1643 -1.9729 46 1 -5.3358 -8.9734 -1.0271 47 1 -1.3926 -3.6286 -1.8433 48 1 -0.2175 -1.5227 -1.4496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225853166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = 88.612527 kcal Electronic energy + Delta-G solvation = -30590.620334 eV Core-core repulsion = 26736.539629 eV Total energy + Delta-G solvation = -3854.080705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.92147 -39.14297 -38.35223 -36.55835 -34.39891 -33.12805 -32.16954 -30.96425 -29.58230 -29.23997 -29.02196 -27.55197 -25.06989 -23.71282 -23.43833 -22.88530 -21.35450 -21.11462 -20.39240 -19.98362 -17.93134 -17.80331 -17.34973 -16.86648 -16.06957 -15.54195 -15.52460 -15.28442 -15.08675 -14.95722 -14.22675 -13.99059 -13.76021 -13.73181 -13.51688 -13.36569 -12.93284 -12.76372 -12.15050 -12.03259 -11.97247 -11.73935 -11.54795 -11.46815 -11.37592 -11.27058 -11.19596 -11.10512 -10.87834 -10.74211 -10.57878 -10.46776 -9.92817 -9.77247 -9.37922 -9.30689 -9.27522 -8.93551 -8.90738 -7.68677 -7.32126 -6.89410 -6.74833 -6.14363 -4.36985 1.38227 1.47629 1.65122 2.39388 2.79549 2.98040 3.07746 3.10742 3.12866 3.22205 3.88479 3.92517 3.96451 4.26236 4.33761 4.44189 4.63508 4.66371 4.80607 4.97903 5.16280 5.19813 5.26816 5.29949 5.36229 5.46218 5.52181 5.61723 5.66087 5.69660 5.81075 5.87906 5.92099 6.03231 6.10493 6.15379 6.26737 6.31551 6.40984 6.51469 6.57739 6.90224 6.94716 7.02501 7.07387 7.19424 7.26329 7.57331 7.63460 7.89165 8.03783 8.15037 8.20026 8.25827 8.62369 8.85252 8.94029 10.18931 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.002721 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.562810 B =10286.494197 C =10810.574744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.222 4.222 11 C -0.083 4.083 12 C -0.034 4.034 13 N -0.591 5.591 14 C 0.532 3.468 15 S -0.605 6.605 16 N -0.694 5.694 17 C 0.228 3.772 18 C -0.003 4.003 19 C -0.143 4.143 20 C 0.100 3.900 21 N -0.491 5.491 22 C 0.097 3.903 23 C -0.165 4.165 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.039 4.039 29 C -0.158 4.158 30 H 0.282 0.718 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.388 0.612 34 H 0.391 0.609 35 H 0.117 0.883 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.108 0.892 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.311 -17.302 -5.839 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.243 4.243 11 C -0.104 4.104 12 C -0.127 4.127 13 N -0.209 5.209 14 C 0.175 3.825 15 S -0.473 6.473 16 N -0.328 5.328 17 C 0.141 3.859 18 C -0.014 4.014 19 C -0.163 4.163 20 C -0.057 4.057 21 N -0.201 5.201 22 C -0.060 4.060 23 C -0.186 4.186 24 C -0.166 4.166 25 C -0.168 4.168 26 C -0.159 4.159 27 C -0.158 4.158 28 C -0.061 4.061 29 C -0.179 4.179 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.149 0.851 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.126 0.874 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.470 -15.920 -4.677 19.620 hybrid contribution 1.760 -0.823 -0.947 2.161 sum -8.710 -16.743 -5.624 19.693 Atomic orbital electron populations 1.69858 1.07358 1.29259 1.34072 1.25965 0.94866 1.01379 0.92577 0.86219 0.80719 0.80912 0.78641 1.18456 1.19684 1.19900 1.19644 0.95986 0.90612 1.41981 0.90321 1.17734 0.91224 0.91942 0.87419 1.20523 1.03452 0.92906 1.07394 1.19992 0.95711 0.97106 0.97541 1.16895 0.98739 0.84145 1.12926 1.42034 1.02491 1.11912 1.64509 1.22509 0.85851 0.91429 0.82707 1.93454 1.64664 1.23743 1.65391 1.45030 1.07057 1.10023 1.70673 1.19821 0.76780 0.96674 0.92580 1.19984 0.93490 0.93839 0.94071 1.21672 0.99918 1.01468 0.93280 1.22513 0.91453 0.94921 0.96765 1.67592 1.06185 1.12340 1.33972 1.22563 0.99286 0.96136 0.88028 1.21719 0.95777 1.02187 0.98889 1.23141 1.03836 0.97524 0.92082 1.22630 1.00801 0.95509 0.97841 1.22365 0.99830 0.97901 0.95799 1.22459 1.00559 0.94525 0.98276 1.20471 0.96764 0.91491 0.97342 1.20929 0.98497 0.96383 1.02098 0.90699 0.88614 0.89583 0.77624 0.77261 0.86479 0.83564 0.83337 0.85147 0.89670 0.87800 0.91798 0.91094 0.91378 0.91039 0.90905 0.90145 0.87378 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.57 10.83 55.54 0.60 -19.97 16 2 C 0.07 1.78 5.25 -17.34 -0.09 1.69 16 3 Si 0.91 18.61 29.57 -169.99 -5.03 13.58 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.45 -11.79 9.04 -37.86 -0.34 -12.13 16 8 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 9 C 0.12 3.13 5.55 -106.80 -0.59 2.54 16 10 C -0.22 -5.25 9.74 -39.26 -0.38 -5.63 16 11 C -0.08 -1.75 9.90 -39.79 -0.39 -2.14 16 12 C -0.03 -0.71 5.91 -83.60 -0.49 -1.21 16 13 N -0.59 -9.42 5.29 -11.28 -0.06 -9.48 16 14 C 0.53 8.42 6.05 -86.92 -0.53 7.89 16 15 S -0.61 -12.65 20.40 -107.50 -2.19 -14.84 16 16 N -0.69 -7.76 4.26 -49.33 -0.21 -7.97 16 17 C 0.23 2.45 0.79 -131.85 -0.10 2.34 16 18 C 0.00 -0.04 2.96 -104.32 -0.31 -0.35 16 19 C -0.14 -2.02 7.98 -39.44 -0.31 -2.33 16 20 C 0.10 1.47 11.18 -17.54 -0.20 1.28 16 21 N -0.49 -7.53 10.36 -13.25 -0.14 -7.66 16 22 C 0.10 1.28 11.18 -17.55 -0.20 1.08 16 23 C -0.16 -2.02 8.98 -39.44 -0.35 -2.37 16 24 C -0.13 -1.50 4.95 -25.02 -0.12 -1.63 16 25 C -0.13 -1.15 6.91 -24.70 -0.17 -1.32 16 26 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 27 C -0.12 -0.90 6.23 -25.61 -0.16 -1.06 16 28 C -0.04 -0.92 7.77 -39.78 -0.31 -1.23 16 29 C -0.16 -4.12 8.60 -39.26 -0.34 -4.46 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.09 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.39 4.66 8.84 -40.82 -0.36 4.30 16 34 H 0.39 3.11 8.10 -40.82 -0.33 2.78 16 35 H 0.12 1.62 6.83 -52.48 -0.36 1.27 16 36 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.13 1.29 6.67 -52.48 -0.35 0.94 16 39 H 0.08 1.03 5.80 -51.93 -0.30 0.72 16 40 H 0.10 1.62 5.47 -46.63 -0.26 1.36 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.44 7.46 -51.93 -0.39 0.06 16 46 H 0.08 0.60 7.67 -51.93 -0.40 0.20 16 47 H 0.11 2.56 6.26 -49.54 -0.31 2.25 16 48 H 0.12 3.35 6.21 -52.49 -0.33 3.02 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -31.90 388.11 -13.05 -44.95 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -6.31 Total: 15.60 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -5.57 Total: -20.05 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.19 Total: -45.09 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -12.65 SS G_CDS: -2.19 Total: -14.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.90 -13.05 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225853166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.567 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds