Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46871 * 299.99536 * 3 2 1 6 6 H 1.48501 * 109.47031 * 59.99622 * 3 2 1 7 7 C 1.39884 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00295 * 190.67635 * 7 2 1 9 9 C 1.41142 * 119.99737 * 10.67681 * 7 2 1 10 10 C 1.40882 * 120.16060 * 208.77763 * 9 7 2 11 11 C 1.36357 * 119.82954 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.16607 * 0.02562 * 11 10 9 13 13 N 1.39147 * 119.83543 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00077 * 138.22005 * 13 12 11 15 15 S 1.71201 * 119.99738 * 354.59593 * 14 13 12 16 16 N 1.34775 * 119.99966 * 174.59281 * 14 13 12 17 17 C 1.46500 * 119.99710 * 185.04065 * 16 14 13 18 18 C 1.50698 * 110.01978 * 295.54881 * 17 16 14 19 19 C 1.38645 * 120.78993 * 341.35972 * 18 17 16 20 20 C 1.38204 * 119.16362 * 180.29817 * 19 18 17 21 21 N 1.31878 * 120.76089 * 359.41047 * 20 19 18 22 22 C 1.31865 * 121.72535 * 0.62759 * 21 20 19 23 23 C 1.38207 * 120.76263 * 359.66184 * 22 21 20 24 24 C 1.54272 * 110.02983 * 56.93998 * 17 16 14 25 25 C 1.54972 * 104.15832 * 95.75213 * 24 17 16 26 26 C 1.54887 * 102.77619 * 37.89019 * 25 24 17 27 27 C 1.53875 * 110.03246 * 174.15540 * 17 16 14 28 28 C 1.39505 * 120.33018 * 0.27001 * 12 11 10 29 29 C 1.36365 * 120.16433 * 359.44345 * 28 12 11 30 30 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.08199 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.91613 * 179.97438 * 11 10 9 33 33 H 0.96996 * 120.00154 * 318.22292 * 13 12 11 34 34 H 0.96997 * 119.99788 * 5.04709 * 16 14 13 35 35 H 1.08004 * 120.42032 * 0.03117 * 19 18 17 36 36 H 1.07994 * 119.62070 * 179.72509 * 20 19 18 37 37 H 1.08002 * 119.61711 * 179.67964 * 22 21 20 38 38 H 1.08008 * 120.41500 * 179.97438 * 23 22 21 39 39 H 1.08999 * 110.48628 * 214.39769 * 24 17 16 40 40 H 1.09000 * 110.48811 * 337.04051 * 24 17 16 41 41 H 1.08995 * 110.72011 * 279.57313 * 25 24 17 42 42 H 1.09002 * 110.92134 * 156.29488 * 25 24 17 43 43 H 1.09006 * 110.48031 * 203.40824 * 26 25 24 44 44 H 1.08994 * 110.49390 * 80.76199 * 26 25 24 45 45 H 1.08997 * 110.03004 * 359.95198 * 27 17 16 46 46 H 1.08992 * 110.03655 * 121.38373 * 27 17 16 47 47 H 1.07998 * 119.91909 * 179.70621 * 28 12 11 48 48 H 1.07995 * 120.07943 * 180.27401 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8840 2.3965 1.2125 7 6 2.0082 -1.2114 0.0005 8 1 3.0742 -1.2194 0.1738 9 6 1.3208 -2.4232 -0.2254 10 6 1.7986 -3.6235 0.3367 11 6 1.1295 -4.7904 0.1137 12 6 -0.0251 -4.7979 -0.6693 13 7 -0.7021 -5.9928 -0.8929 14 6 -2.0489 -6.0226 -0.8494 15 16 -2.9213 -4.6251 -0.3836 16 7 -2.7087 -7.1524 -1.1725 17 6 -4.1725 -7.1541 -1.2324 18 6 -4.7452 -6.8879 0.1358 19 6 -3.9735 -7.0623 1.2744 20 6 -4.5346 -6.8142 2.5128 21 7 -5.7841 -6.4054 2.6175 22 6 -6.5473 -6.2293 1.5567 23 6 -6.0564 -6.4631 0.2861 24 6 -4.6618 -6.0820 -2.2279 25 6 -4.8784 -6.8622 -3.5493 26 6 -5.4561 -8.2130 -3.0587 27 6 -4.6769 -8.5086 -1.7605 28 6 -0.5008 -3.6144 -1.2343 29 6 0.1545 -2.4387 -1.0152 30 1 -0.4850 0.8400 -0.0004 31 1 2.6926 -3.6192 0.9427 32 1 1.4948 -5.7114 0.5436 33 1 -0.2049 -6.8043 -1.0801 34 1 -2.2144 -7.9645 -1.3653 35 1 -2.9481 -7.3920 1.1949 36 1 -3.9416 -6.9520 3.4048 37 1 -7.5676 -5.8983 1.6822 38 1 -6.6866 -6.3175 -0.5789 39 1 -5.5993 -5.6435 -1.8860 40 1 -3.9041 -5.3096 -2.3598 41 1 -3.9316 -7.0125 -4.0679 42 1 -5.5922 -6.3477 -4.1926 43 1 -5.2777 -8.9948 -3.7971 44 1 -6.5219 -8.1192 -2.8509 45 1 -3.8325 -9.1643 -1.9729 46 1 -5.3358 -8.9734 -1.0271 47 1 -1.3926 -3.6286 -1.8433 48 1 -0.2175 -1.5227 -1.4496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225853166.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = 71.042736 kcal Electronic energy + Delta-G solvation = -30591.382217 eV Core-core repulsion = 26736.539629 eV Total energy + Delta-G solvation = -3854.842589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94065 -40.53117 -39.61086 -38.02695 -35.81112 -34.63486 -33.30859 -32.00104 -31.43677 -30.85517 -29.87796 -28.59463 -26.74930 -25.15026 -24.47390 -23.88118 -23.07333 -22.52591 -21.45989 -21.07271 -19.31113 -19.15273 -19.00478 -18.03572 -17.29472 -17.02504 -16.65784 -16.48780 -16.30717 -15.91769 -15.76496 -15.57594 -14.87043 -14.70620 -14.65844 -14.51615 -14.36685 -14.08686 -13.94317 -13.56543 -13.37710 -12.91198 -12.80870 -12.77156 -12.58126 -12.35038 -12.30905 -12.12259 -12.09041 -12.01262 -11.96183 -11.64497 -11.54243 -11.40130 -11.15648 -10.59696 -10.34899 -10.24846 -9.96408 -9.50602 -9.05112 -8.59775 -8.51111 -7.81109 -6.31123 0.20742 0.34595 0.44664 0.96952 1.14542 1.24579 1.38692 1.52278 1.54320 1.66033 2.21387 2.68674 2.78835 2.93280 3.40639 3.53924 3.65429 3.68380 3.75854 4.03277 4.14236 4.25687 4.34154 4.40127 4.45151 4.49649 4.52847 4.53334 4.64436 4.77580 4.78855 4.91506 4.92320 4.98093 5.06573 5.12155 5.13121 5.16079 5.21688 5.28994 5.34626 5.39664 5.44473 5.46765 5.56466 5.73452 5.83624 5.88930 6.00370 6.13176 6.23248 6.38385 6.59299 6.72649 6.94507 7.05360 7.14464 8.36384 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.002721 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.562810 B =10286.494197 C =10810.574744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.089 3.911 10 C -0.234 4.234 11 C -0.079 4.079 12 C -0.011 4.011 13 N -0.584 5.584 14 C 0.566 3.434 15 S -0.699 6.699 16 N -0.662 5.662 17 C 0.225 3.775 18 C -0.007 4.007 19 C -0.154 4.154 20 C 0.080 3.920 21 N -0.518 5.518 22 C 0.086 3.914 23 C -0.165 4.165 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.113 4.113 27 C -0.112 4.112 28 C -0.043 4.043 29 C -0.182 4.182 30 H 0.284 0.716 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.416 0.584 34 H 0.416 0.584 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.173 0.827 38 H 0.154 0.846 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 -20.815 -6.958 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.086 3.914 10 C -0.254 4.254 11 C -0.099 4.099 12 C -0.105 4.105 13 N -0.206 5.206 14 C 0.205 3.795 15 S -0.568 6.568 16 N -0.294 5.294 17 C 0.139 3.861 18 C -0.018 4.018 19 C -0.175 4.175 20 C -0.076 4.076 21 N -0.228 5.228 22 C -0.071 4.071 23 C -0.185 4.185 24 C -0.167 4.167 25 C -0.162 4.162 26 C -0.150 4.150 27 C -0.150 4.150 28 C -0.065 4.065 29 C -0.204 4.204 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.256 0.744 34 H 0.257 0.743 35 H 0.136 0.864 36 H 0.171 0.829 37 H 0.190 0.810 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.528 -19.540 -5.818 22.945 hybrid contribution 1.610 0.005 -0.655 1.738 sum -8.919 -19.535 -6.473 22.429 Atomic orbital electron populations 1.69965 1.09065 1.30179 1.36007 1.26850 0.95502 1.04803 0.91529 0.85112 0.79493 0.76110 0.78697 1.17543 1.19083 1.19504 1.19896 0.96283 0.91635 1.44081 0.90052 1.18046 0.91736 0.93338 0.88287 1.20757 1.04160 0.93041 1.07460 1.20325 0.95057 0.97968 0.96576 1.16803 0.98268 0.84819 1.10584 1.41635 1.02434 1.11549 1.64992 1.21853 0.85333 0.91125 0.81226 1.93789 1.66354 1.27543 1.69121 1.45000 1.07703 1.09321 1.67411 1.20095 0.75771 0.98722 0.91494 1.20226 0.93740 0.93216 0.94574 1.21721 1.00056 1.02115 0.93577 1.22733 0.91746 0.95523 0.97584 1.67592 1.06720 1.13336 1.35196 1.23048 1.00239 0.95737 0.88101 1.21999 0.96007 1.01163 0.99371 1.23018 1.02311 0.97160 0.94233 1.22585 1.01164 0.96369 0.96116 1.22356 1.00092 0.96933 0.95635 1.22486 1.01600 0.92325 0.98602 1.20479 0.96239 0.92137 0.97638 1.20794 0.99636 0.96373 1.03548 0.90506 0.87482 0.85305 0.74383 0.74322 0.86389 0.82947 0.81029 0.82856 0.90323 0.91691 0.91915 0.90611 0.89217 0.90158 0.88455 0.89377 0.88043 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.21 10.83 21.82 0.24 -45.98 16 2 C 0.03 1.43 5.25 85.23 0.45 1.88 16 3 Si 0.99 39.51 29.57 68.60 2.03 41.54 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.49 -26.60 9.04 23.38 0.21 -26.39 16 8 H 0.08 4.18 7.87 -2.91 -0.02 4.16 16 9 C 0.09 4.82 5.55 -21.27 -0.12 4.70 16 10 C -0.23 -11.05 9.74 22.48 0.22 -10.83 16 11 C -0.08 -3.18 9.90 22.14 0.22 -2.96 16 12 C -0.01 -0.45 5.91 38.59 0.23 -0.22 16 13 N -0.58 -17.06 5.29 -189.61 -1.00 -18.06 16 14 C 0.57 16.90 6.05 179.05 1.08 17.99 16 15 S -0.70 -29.78 20.40 -56.49 -1.15 -30.93 16 16 N -0.66 -12.67 4.26 -309.99 -1.32 -14.00 16 17 C 0.23 4.23 0.79 3.58 0.00 4.23 16 18 C -0.01 -0.17 2.96 -19.67 -0.06 -0.22 16 19 C -0.15 -4.20 7.98 22.36 0.18 -4.02 16 20 C 0.08 2.36 11.18 84.68 0.95 3.31 16 21 N -0.52 -15.90 10.36 -195.84 -2.03 -17.93 16 22 C 0.09 2.19 11.18 84.68 0.95 3.14 16 23 C -0.16 -3.82 8.98 22.36 0.20 -3.62 16 24 C -0.13 -2.85 4.95 31.70 0.16 -2.70 16 25 C -0.12 -1.84 6.91 31.91 0.22 -1.62 16 26 C -0.11 -1.03 6.83 31.67 0.22 -0.81 16 27 C -0.11 -1.17 6.23 31.32 0.19 -0.97 16 28 C -0.04 -2.10 7.77 22.14 0.17 -1.93 16 29 C -0.18 -10.05 8.60 22.48 0.19 -9.85 16 30 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 31 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.42 8.10 8.84 -92.71 -0.82 7.28 16 34 H 0.42 4.53 8.10 -92.71 -0.75 3.78 16 35 H 0.12 3.06 6.83 -2.91 -0.02 3.05 16 36 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.15 2.73 6.67 -2.91 -0.02 2.71 16 39 H 0.08 1.83 5.80 -2.39 -0.01 1.82 16 40 H 0.06 2.03 5.47 -5.76 -0.03 1.99 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 0.53 8.14 -2.38 -0.02 0.52 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.60 7.46 -2.39 -0.02 0.58 16 46 H 0.09 0.89 7.67 -2.39 -0.02 0.88 16 47 H 0.10 5.03 6.26 -4.79 -0.03 5.00 16 48 H 0.09 5.62 6.21 -2.91 -0.02 5.60 16 Total: -1.00 -76.55 388.11 1.84 -74.71 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.58 Total: 41.56 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 5.66 Total: -30.91 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -4.12 Total: -95.96 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: -29.78 SS G_CDS: -1.15 Total: -30.93 kcal Total: -76.55 1.84 -74.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225853166.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.754 kcal (2) G-P(sol) polarization free energy of solvation -76.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds