Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 C 1.53004 * 109.47168 * 240.00535 * 2 1 3 5 5 C 1.52994 * 109.47640 * 120.00001 * 2 1 3 6 6 H 1.09001 * 109.46897 * 300.00246 * 5 2 1 7 7 O 1.42902 * 109.47592 * 180.02562 * 5 2 1 8 8 C 1.53002 * 109.46924 * 59.99951 * 5 2 1 9 9 C 1.53004 * 109.46930 * 185.00052 * 8 5 2 10 10 H 1.09000 * 109.47324 * 55.00194 * 9 8 5 11 11 C 1.52998 * 109.46875 * 175.00088 * 9 8 5 12 12 O 1.42896 * 109.47584 * 55.00168 * 11 9 8 13 13 N 1.46492 * 109.47185 * 295.00120 * 9 8 5 14 14 C 1.34784 * 120.00217 * 155.00420 * 13 9 8 15 15 O 1.21552 * 119.99611 * 359.97438 * 14 13 9 16 16 C 1.47865 * 120.00304 * 179.97438 * 14 13 9 17 17 C 1.39665 * 120.09843 * 359.97438 * 16 14 13 18 18 C 1.38047 * 120.03832 * 180.02562 * 17 16 14 19 19 C 1.38176 * 120.23812 * 359.67600 * 18 17 16 20 20 C 1.39179 * 120.20540 * 0.60009 * 19 18 17 21 21 S 1.76194 * 120.02163 * 179.69520 * 20 19 18 22 22 C 1.76196 * 100.00182 * 265.25136 * 21 20 19 23 23 H 1.08000 * 120.00393 * 5.12593 * 22 21 20 24 24 C 1.38736 * 120.00006 * 185.12109 * 22 21 20 25 25 N 1.31616 * 119.99932 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99686 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47166 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.46857 * 120.00071 * 26 24 22 29 29 H 1.48498 * 109.46876 * 239.99864 * 26 24 22 30 30 C 1.38875 * 119.95687 * 359.42658 * 20 19 18 31 31 H 1.09001 * 109.47177 * 299.99924 * 1 2 3 32 32 H 1.08998 * 109.47821 * 60.00011 * 1 2 3 33 33 H 1.09003 * 109.46802 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47553 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47372 * 300.00134 * 3 2 1 36 36 H 1.09001 * 109.47092 * 60.00025 * 3 2 1 37 37 H 1.09004 * 109.46353 * 299.99722 * 4 2 1 38 38 H 1.08998 * 109.47195 * 59.99071 * 4 2 1 39 39 H 1.08998 * 109.47259 * 179.97438 * 4 2 1 40 40 H 0.96703 * 113.99350 * 300.00253 * 7 5 2 41 41 H 1.08997 * 109.47217 * 65.00191 * 8 5 2 42 42 H 1.08995 * 109.47254 * 305.00193 * 8 5 2 43 43 H 1.09007 * 109.47134 * 175.00181 * 11 9 8 44 44 H 1.09000 * 109.47529 * 295.00194 * 11 9 8 45 45 H 0.96692 * 114.00791 * 180.02562 * 12 11 9 46 46 H 0.96996 * 120.00373 * 334.99555 * 13 9 8 47 47 H 1.08002 * 119.98607 * 0.02562 * 17 16 14 48 48 H 1.07993 * 119.87788 * 179.97438 * 18 17 16 49 49 H 1.08004 * 119.89897 * 180.29644 * 19 18 17 50 50 H 0.97004 * 119.99833 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.12505 * 180.25503 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 1.6767 -0.2074 2.1391 7 8 3.4691 -0.7207 1.2494 8 6 1.5301 -2.1637 1.2492 9 6 1.9350 -2.8478 2.5565 10 1 1.5754 -2.2597 3.4008 11 6 1.3201 -4.2477 2.6113 12 8 1.6983 -4.9802 1.4441 13 7 3.3947 -2.9527 2.6210 14 6 4.0122 -3.0365 3.8161 15 8 3.3579 -3.0246 4.8404 16 6 5.4856 -3.1431 3.8812 17 6 6.2394 -3.1576 2.7055 18 6 7.6149 -3.2576 2.7678 19 6 8.2522 -3.3370 3.9912 20 6 7.5105 -3.3292 5.1689 21 16 8.3276 -3.4388 6.7260 22 6 8.2276 -5.1760 7.0025 23 1 7.8221 -5.8221 6.2380 24 6 8.6699 -5.7141 8.2023 25 7 9.1647 -4.9268 9.1339 26 14 8.5646 -7.5561 8.4951 27 1 7.9751 -8.2141 7.3015 28 1 9.9260 -8.0973 8.7376 29 1 7.7084 -7.8209 9.6791 30 6 6.1263 -3.2294 5.1160 31 1 -0.3633 0.5138 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7488 -1.2493 38 1 1.6765 -0.2074 -2.1393 39 1 3.1300 -0.7208 -1.2496 40 1 3.8626 -1.1621 0.4843 41 1 1.9647 -2.7027 0.4073 42 1 0.4438 -2.1651 1.1596 43 1 1.6796 -4.7680 3.4991 44 1 0.2339 -4.1661 2.6528 45 1 1.3429 -5.8788 1.4113 46 1 3.9169 -2.9620 1.8037 47 1 5.7461 -3.0905 1.7471 48 1 8.1952 -3.2690 1.8571 49 1 9.3289 -3.4103 4.0336 50 1 9.4736 -5.3030 9.9730 51 1 5.5484 -3.2189 6.0283 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241862520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -131.534101 kcal Electronic energy + Delta-G solvation = -31463.269997 eV Core-core repulsion = 27260.041347 eV Total energy + Delta-G solvation = -4203.228650 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38246 -39.33429 -37.92028 -37.03811 -35.21454 -34.52501 -32.47334 -31.93416 -30.51782 -30.11112 -28.09827 -27.79373 -27.26910 -25.53475 -24.24577 -23.46733 -22.25738 -21.10025 -20.27712 -19.43729 -18.28173 -17.71860 -17.32353 -16.71402 -16.38827 -15.79624 -15.64734 -15.30202 -15.12267 -14.82561 -14.77004 -14.49602 -14.29078 -14.22542 -14.05544 -13.66801 -13.36184 -13.18048 -12.85870 -12.82887 -12.62833 -12.42591 -12.36877 -12.19065 -12.10084 -11.70053 -11.61727 -11.52713 -11.38461 -11.18291 -11.10242 -11.08757 -11.03119 -10.72905 -10.65764 -10.32283 -10.00111 -9.89862 -9.62907 -9.13459 -8.99240 -8.90444 -8.47645 -7.95146 -6.66409 -6.25201 -3.98326 1.28225 1.76184 3.12655 3.21690 3.22785 3.26845 3.31488 3.53188 3.95525 4.04376 4.15921 4.20438 4.33339 4.35751 4.51340 4.64282 4.74189 4.84811 4.97673 5.08229 5.11090 5.12833 5.15706 5.19696 5.20176 5.29725 5.33462 5.37573 5.45842 5.46893 5.51350 5.52352 5.55145 5.58228 5.66451 5.77453 5.81919 5.85398 5.96444 6.00288 6.01112 6.09992 6.34711 6.53987 6.69477 6.73132 7.01860 7.28694 7.33743 7.37256 7.61267 7.67922 8.36668 8.44750 9.20661 10.81566 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.002204 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.299131 B =12702.692542 C =13551.877223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.149 4.149 5 C 0.116 3.884 6 H 0.097 0.903 7 O -0.546 6.546 8 C -0.158 4.158 9 C 0.156 3.844 10 H 0.098 0.902 11 C 0.060 3.940 12 O -0.570 6.570 13 N -0.704 5.704 14 C 0.567 3.433 15 O -0.545 6.545 16 C -0.150 4.150 17 C -0.084 4.084 18 C -0.143 4.143 19 C -0.057 4.057 20 C -0.107 4.107 21 S -0.037 6.037 22 C -0.517 4.517 23 H 0.076 0.924 24 C 0.072 3.928 25 N -0.870 5.870 26 Si 0.921 3.079 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.279 1.279 30 C -0.020 4.020 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.366 0.634 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.378 0.622 46 H 0.399 0.601 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.130 0.870 50 H 0.269 0.731 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.324 6.875 -23.284 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.207 4.207 5 C 0.057 3.943 6 H 0.115 0.885 7 O -0.351 6.351 8 C -0.196 4.196 9 C 0.050 3.950 10 H 0.116 0.884 11 C -0.019 4.019 12 O -0.375 6.375 13 N -0.356 5.356 14 C 0.356 3.644 15 O -0.423 6.423 16 C -0.154 4.154 17 C -0.103 4.103 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.218 4.218 21 S 0.198 5.802 22 C -0.664 4.664 23 H 0.094 0.906 24 C -0.137 4.137 25 N -0.506 5.506 26 Si 0.747 3.253 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.205 1.205 30 C -0.042 4.042 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.213 0.787 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.224 0.776 46 H 0.235 0.765 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.148 0.852 50 H 0.078 0.922 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.010 8.609 -21.229 28.533 hybrid contribution -0.759 -2.910 -1.367 3.304 sum -17.769 5.699 -22.596 29.306 Atomic orbital electron populations 1.21920 0.94155 1.02035 1.02054 1.21225 0.96211 0.96646 0.95971 1.21785 1.01830 0.94463 1.01376 1.21959 1.01063 1.00552 0.97078 1.21980 0.81112 0.93837 0.97358 0.88478 1.86719 1.18730 1.80878 1.48797 1.22638 1.02679 0.96304 0.97989 1.20925 0.81233 0.93971 0.98831 0.88371 1.22701 0.97715 0.93264 0.88177 1.86420 1.77664 1.30207 1.43196 1.45677 1.06379 1.75088 1.08477 1.18368 0.87660 0.75234 0.83168 1.90747 1.66903 1.50477 1.34207 1.19849 0.92127 1.08702 0.94758 1.21099 0.94206 0.98586 0.96432 1.21039 0.94222 1.03168 0.97801 1.21923 1.00356 0.94117 0.91414 1.22808 0.95734 1.01623 1.01641 1.83591 1.71169 1.12470 1.13017 1.22878 1.48413 0.90593 1.04557 0.90617 1.25006 0.94595 0.99337 0.94736 1.70000 1.39077 1.35201 1.06309 0.86073 0.77983 0.82834 0.78442 1.19533 1.20501 1.20475 1.21922 0.93862 0.91575 0.96858 0.92441 0.92493 0.92175 0.91849 0.92993 0.92730 0.92063 0.92370 0.92460 0.78699 0.89798 0.89440 0.92711 0.93085 0.77572 0.76486 0.86642 0.86008 0.85223 0.92161 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.13 37.16 0.30 -0.45 16 2 C -0.10 -0.59 0.63 -154.51 -0.10 -0.68 16 3 C -0.14 -0.92 8.33 37.16 0.31 -0.61 16 4 C -0.15 -0.76 7.82 37.16 0.29 -0.46 16 5 C 0.12 0.85 2.29 -26.73 -0.06 0.79 16 6 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 7 O -0.55 -4.72 10.54 -35.23 -0.37 -5.09 16 8 C -0.16 -1.09 3.53 -26.73 -0.09 -1.19 16 9 C 0.16 1.56 2.37 -67.93 -0.16 1.40 16 10 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 11 C 0.06 0.57 6.85 37.16 0.25 0.83 16 12 O -0.57 -4.91 12.83 -35.23 -0.45 -5.36 16 13 N -0.70 -8.39 3.77 -54.75 -0.21 -8.59 16 14 C 0.57 9.47 7.74 -12.32 -0.10 9.37 16 15 O -0.54 -10.95 16.00 5.32 0.09 -10.87 16 16 C -0.15 -2.64 5.87 -105.00 -0.62 -3.25 16 17 C -0.08 -1.21 9.54 -39.12 -0.37 -1.59 16 18 C -0.14 -2.13 10.02 -39.67 -0.40 -2.53 16 19 C -0.06 -1.06 9.79 -39.25 -0.38 -1.44 16 20 C -0.11 -2.37 5.45 -39.00 -0.21 -2.58 16 21 S -0.04 -0.98 21.40 -107.50 -2.30 -3.28 16 22 C -0.52 -14.84 9.46 30.92 0.29 -14.55 16 23 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 24 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 25 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 26 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 30 C -0.02 -0.43 9.34 -38.92 -0.36 -0.80 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 6.32 -51.93 -0.33 -0.04 16 34 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.27 6.78 -51.93 -0.35 -0.08 16 40 H 0.37 2.15 7.08 45.56 0.32 2.47 16 41 H 0.08 0.57 6.30 -51.93 -0.33 0.24 16 42 H 0.09 0.51 6.17 -51.93 -0.32 0.19 16 43 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 1.91 9.12 45.56 0.42 2.33 16 46 H 0.40 3.98 5.56 -40.82 -0.23 3.75 16 47 H 0.12 1.21 6.40 -52.49 -0.34 0.88 16 48 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 49 H 0.13 2.29 8.06 -52.48 -0.42 1.86 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.14 3.14 7.65 -52.49 -0.40 2.74 16 LS Contribution 421.82 15.07 6.36 6.36 Total: -1.00 -34.83 421.82 -9.14 -43.97 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.46 Total: 6.99 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.50 Total: -15.79 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.53 Total: -33.66 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.74 Total: -21.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.30 Total: -3.28 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.83 -9.14 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241862520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.568 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds