Wall clock time and date at job start Tue Mar 31 2020 06:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47160 * 2 1 4 4 C 1.52991 * 109.47472 * 239.99756 * 2 1 3 5 5 C 1.52999 * 109.46986 * 119.99421 * 2 1 3 6 6 H 1.08999 * 109.47548 * 180.02562 * 5 2 1 7 7 O 1.42904 * 109.47322 * 300.00176 * 5 2 1 8 8 C 1.52996 * 109.47034 * 60.00082 * 5 2 1 9 9 C 1.52998 * 109.47349 * 175.00060 * 8 5 2 10 10 H 1.09002 * 109.47166 * 305.00359 * 9 8 5 11 11 C 1.53003 * 109.47311 * 185.00311 * 9 8 5 12 12 O 1.42901 * 109.47000 * 304.99711 * 11 9 8 13 13 N 1.46495 * 109.47213 * 65.00096 * 9 8 5 14 14 C 1.34782 * 120.00252 * 205.00330 * 13 9 8 15 15 O 1.21547 * 119.99885 * 359.97438 * 14 13 9 16 16 C 1.47864 * 120.00027 * 179.97438 * 14 13 9 17 17 C 1.39673 * 120.10227 * 359.72492 * 16 14 13 18 18 C 1.38038 * 120.03446 * 179.74439 * 17 16 14 19 19 C 1.38175 * 120.24993 * 0.55486 * 18 17 16 20 20 C 1.39187 * 120.19545 * 359.69678 * 19 18 17 21 21 S 1.76203 * 120.01673 * 180.02562 * 20 19 18 22 22 C 1.76202 * 99.99895 * 265.52552 * 21 20 19 23 23 H 1.08002 * 119.99895 * 5.12466 * 22 21 20 24 24 C 1.38727 * 119.99939 * 185.11776 * 22 21 20 25 25 N 1.31625 * 120.00092 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00103 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47276 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47194 * 120.00139 * 26 24 22 29 29 H 1.48498 * 109.47286 * 239.99959 * 26 24 22 30 30 C 1.38871 * 119.96400 * 0.02562 * 20 19 18 31 31 H 1.09005 * 109.47527 * 300.00662 * 1 2 3 32 32 H 1.09001 * 109.46802 * 60.00256 * 1 2 3 33 33 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47147 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47054 * 299.99590 * 3 2 1 36 36 H 1.09002 * 109.46952 * 59.99263 * 3 2 1 37 37 H 1.09007 * 109.46785 * 300.00177 * 4 2 1 38 38 H 1.08998 * 109.47373 * 59.99721 * 4 2 1 39 39 H 1.08999 * 109.47387 * 180.02562 * 4 2 1 40 40 H 0.96706 * 113.99725 * 59.99468 * 7 5 2 41 41 H 1.08998 * 109.47109 * 55.00049 * 8 5 2 42 42 H 1.09004 * 109.47247 * 295.00400 * 8 5 2 43 43 H 1.08996 * 109.46951 * 185.00116 * 11 9 8 44 44 H 1.08994 * 109.47199 * 64.99600 * 11 9 8 45 45 H 0.96702 * 114.00036 * 179.97438 * 12 11 9 46 46 H 0.96999 * 120.00325 * 25.00336 * 13 9 8 47 47 H 1.08001 * 119.97811 * 359.97438 * 17 16 14 48 48 H 1.08003 * 119.87546 * 180.27163 * 18 17 16 49 49 H 1.08000 * 119.90278 * 179.72318 * 19 18 17 50 50 H 0.97000 * 120.00157 * 179.97438 * 25 24 22 51 51 H 1.07997 * 120.12525 * 180.02562 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 3.1299 -0.7208 1.2496 7 8 1.5636 -0.0474 2.4161 8 6 1.5300 -2.1636 1.2494 9 6 2.1399 -2.9201 2.4311 10 1 3.2264 -2.8433 2.3899 11 6 1.7298 -4.3925 2.3605 12 8 0.3053 -4.4876 2.2973 13 7 1.6565 -2.3381 3.6855 14 6 2.3870 -2.4618 4.8115 15 8 3.4467 -3.0566 4.7861 16 6 1.8993 -1.8738 6.0775 17 6 0.6846 -1.1849 6.1078 18 6 0.2281 -0.6411 7.2916 19 6 0.9741 -0.7652 8.4480 20 6 2.1884 -1.4451 8.4281 21 16 3.1356 -1.6011 9.9057 22 6 4.2154 -0.2206 9.7241 23 1 4.0835 0.4632 8.8986 24 6 5.2349 -0.0120 10.6415 25 7 5.3958 -0.8456 11.6474 26 14 6.3792 1.4518 10.4495 27 1 5.9892 2.2305 9.2466 28 1 6.2816 2.3176 11.6521 29 1 7.7761 0.9716 10.2974 30 6 2.6531 -2.0005 7.2431 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2490 38 1 1.6767 -0.2075 -2.1391 39 1 3.1300 -0.7216 -1.2489 40 1 0.5995 -0.0092 2.4821 41 1 1.8183 -2.6510 0.3181 42 1 0.4436 -2.1649 1.3389 43 1 2.0895 -4.9128 3.2482 44 1 2.1642 -4.8484 1.4710 45 1 -0.0266 -5.3947 2.2501 46 1 0.8107 -1.8637 3.7059 47 1 0.1006 -1.0808 5.2053 48 1 -0.7136 -0.1127 7.3130 49 1 0.6137 -0.3337 9.3701 50 1 6.1089 -0.7000 12.2887 51 1 3.5947 -2.5290 7.2248 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241862521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:32 Heat of formation + Delta-G solvation = -131.398956 kcal Electronic energy + Delta-G solvation = -31533.515471 eV Core-core repulsion = 27330.292681 eV Total energy + Delta-G solvation = -4203.222790 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.37807 -39.32594 -37.92143 -37.04863 -35.20357 -34.52165 -32.46241 -31.93246 -30.51736 -30.10788 -28.09484 -27.77898 -27.25629 -25.52410 -24.24477 -23.46192 -22.25621 -21.09985 -20.27680 -19.42142 -18.27876 -17.73176 -17.31461 -16.70439 -16.38565 -15.79090 -15.64539 -15.28944 -15.13263 -14.81460 -14.75280 -14.48583 -14.28469 -14.23027 -14.05235 -13.68522 -13.34491 -13.15472 -12.89033 -12.80571 -12.61484 -12.41010 -12.36221 -12.18745 -12.07596 -11.69830 -11.61551 -11.51026 -11.38274 -11.16550 -11.09185 -11.07441 -11.02671 -10.71336 -10.64681 -10.33777 -9.98899 -9.88972 -9.63321 -9.12356 -8.97732 -8.90968 -8.47639 -7.95301 -6.66029 -6.24323 -3.97571 1.28205 1.76190 3.15042 3.18994 3.23351 3.28910 3.33512 3.54282 3.96688 4.02815 4.16977 4.22165 4.33782 4.36944 4.52994 4.65018 4.74623 4.85689 4.97893 5.07887 5.12088 5.13204 5.15987 5.19666 5.21127 5.30931 5.33765 5.38790 5.46349 5.48309 5.52563 5.52990 5.55955 5.58329 5.67949 5.78161 5.83090 5.86063 5.96497 6.02391 6.02638 6.10076 6.34702 6.53942 6.69474 6.73148 7.01894 7.28684 7.31904 7.39449 7.62641 7.67927 8.38036 8.44752 9.21810 10.82477 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.002396 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.904794 B =11681.079699 C =12646.191308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.144 4.144 5 C 0.116 3.884 6 H 0.097 0.903 7 O -0.546 6.546 8 C -0.158 4.158 9 C 0.155 3.845 10 H 0.098 0.902 11 C 0.061 3.939 12 O -0.569 6.569 13 N -0.704 5.704 14 C 0.567 3.433 15 O -0.545 6.545 16 C -0.150 4.150 17 C -0.084 4.084 18 C -0.143 4.143 19 C -0.057 4.057 20 C -0.107 4.107 21 S -0.038 6.038 22 C -0.516 4.516 23 H 0.076 0.924 24 C 0.072 3.928 25 N -0.871 5.871 26 Si 0.920 3.080 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.279 1.279 30 C -0.020 4.020 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.365 0.635 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.377 0.623 46 H 0.399 0.601 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.130 0.870 50 H 0.268 0.732 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.502 -2.029 -26.201 29.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.195 4.195 4 C -0.202 4.202 5 C 0.056 3.944 6 H 0.115 0.885 7 O -0.351 6.351 8 C -0.196 4.196 9 C 0.050 3.950 10 H 0.116 0.884 11 C -0.018 4.018 12 O -0.375 6.375 13 N -0.356 5.356 14 C 0.356 3.644 15 O -0.423 6.423 16 C -0.155 4.155 17 C -0.103 4.103 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.218 4.218 21 S 0.197 5.803 22 C -0.664 4.664 23 H 0.094 0.906 24 C -0.136 4.136 25 N -0.507 5.507 26 Si 0.746 3.254 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.205 1.205 30 C -0.042 4.042 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.213 0.787 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.224 0.776 46 H 0.235 0.765 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.148 0.852 50 H 0.078 0.922 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.959 -2.556 -25.036 27.863 hybrid contribution -0.203 1.271 -1.376 1.884 sum -12.162 -1.285 -26.412 29.106 Atomic orbital electron populations 1.21957 0.94474 1.02091 1.02116 1.21221 0.96161 0.96697 0.95951 1.21789 1.01050 0.94790 1.01870 1.21919 1.01227 1.00285 0.96725 1.21989 0.99110 0.89254 0.84002 0.88472 1.86735 1.25971 1.79059 1.43300 1.22634 1.02418 0.96334 0.98191 1.20930 0.99777 0.90396 0.83902 0.88372 1.22696 0.81381 0.97365 1.00344 1.86431 1.21045 1.32498 1.97490 1.45678 1.24731 1.57560 1.07650 1.18366 0.83618 0.78850 0.83593 1.90746 1.22715 1.42978 1.85894 1.19853 0.97380 1.04497 0.93725 1.21099 0.94778 0.96755 0.97672 1.21039 1.00367 1.01945 0.92897 1.21927 0.93477 0.94363 0.98025 1.22811 0.98569 0.99597 1.00838 1.83575 1.38766 1.41246 1.16733 1.22885 1.17188 1.10774 1.15541 0.90574 1.25000 0.96649 0.97372 0.94623 1.70000 1.31686 1.35848 1.13134 0.86073 0.79880 0.81083 0.78322 1.19467 1.20521 1.20461 1.21924 0.98125 0.94071 0.90085 0.92456 0.92372 0.92073 0.92718 0.92981 0.91836 0.92186 0.92493 0.92435 0.78737 0.89445 0.89800 0.92726 0.93081 0.77619 0.76485 0.86640 0.86011 0.85220 0.92172 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 7.81 37.16 0.29 -0.50 16 2 C -0.10 -0.62 0.63 -154.51 -0.10 -0.72 16 3 C -0.14 -1.00 8.33 37.16 0.31 -0.69 16 4 C -0.14 -0.80 8.13 37.15 0.30 -0.50 16 5 C 0.12 0.90 2.30 -26.73 -0.06 0.84 16 6 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 7 O -0.55 -5.03 10.54 -35.23 -0.37 -5.40 16 8 C -0.16 -1.11 3.53 -26.73 -0.09 -1.20 16 9 C 0.16 1.56 2.37 -67.93 -0.16 1.40 16 10 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 11 C 0.06 0.56 6.85 37.16 0.25 0.81 16 12 O -0.57 -4.64 12.83 -35.23 -0.45 -5.09 16 13 N -0.70 -8.38 3.77 -54.75 -0.21 -8.59 16 14 C 0.57 9.47 7.74 -12.32 -0.10 9.37 16 15 O -0.54 -10.95 16.01 5.32 0.09 -10.87 16 16 C -0.15 -2.64 5.87 -104.99 -0.62 -3.26 16 17 C -0.08 -1.21 9.54 -39.12 -0.37 -1.58 16 18 C -0.14 -2.13 10.02 -39.68 -0.40 -2.53 16 19 C -0.06 -1.05 9.79 -39.25 -0.38 -1.44 16 20 C -0.11 -2.37 5.45 -38.99 -0.21 -2.58 16 21 S -0.04 -1.00 21.41 -107.50 -2.30 -3.30 16 22 C -0.52 -14.90 9.46 30.91 0.29 -14.60 16 23 H 0.08 2.20 7.79 -52.49 -0.41 1.79 16 24 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 25 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 26 Si 0.92 21.92 29.55 -169.99 -5.02 16.89 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C -0.02 -0.43 9.34 -38.92 -0.36 -0.79 16 31 H 0.06 0.29 6.78 -51.93 -0.35 -0.06 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 6.55 -51.93 -0.34 -0.03 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 37 H 0.06 0.30 6.32 -51.93 -0.33 -0.03 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.37 2.31 7.08 45.56 0.32 2.63 16 41 H 0.09 0.52 6.17 -51.93 -0.32 0.20 16 42 H 0.08 0.57 6.30 -51.93 -0.33 0.25 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.38 1.68 9.12 45.56 0.42 2.10 16 46 H 0.40 3.98 5.56 -40.82 -0.23 3.75 16 47 H 0.12 1.21 6.40 -52.49 -0.34 0.88 16 48 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 49 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 50 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.14 3.14 7.65 -52.49 -0.40 2.74 16 LS Contribution 421.81 15.07 6.36 6.36 Total: -1.00 -34.99 421.81 -9.14 -44.13 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.46 Total: 7.04 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.50 Total: -16.02 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.53 Total: -33.74 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.74 Total: -21.36 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.30 Total: -3.30 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.99 -9.14 -44.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241862521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.272 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds