Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47160 * 2 1 4 4 C 1.52991 * 109.47472 * 239.99756 * 2 1 3 5 5 C 1.52999 * 109.46986 * 119.99421 * 2 1 3 6 6 H 1.08999 * 109.47548 * 180.02562 * 5 2 1 7 7 O 1.42904 * 109.47322 * 300.00176 * 5 2 1 8 8 C 1.52996 * 109.47034 * 60.00082 * 5 2 1 9 9 C 1.52998 * 109.47349 * 175.00060 * 8 5 2 10 10 H 1.09002 * 109.47166 * 305.00359 * 9 8 5 11 11 C 1.53003 * 109.47311 * 185.00311 * 9 8 5 12 12 O 1.42901 * 109.47000 * 304.99711 * 11 9 8 13 13 N 1.46495 * 109.47213 * 65.00096 * 9 8 5 14 14 C 1.34782 * 120.00252 * 205.00330 * 13 9 8 15 15 O 1.21547 * 119.99885 * 359.97438 * 14 13 9 16 16 C 1.47864 * 120.00027 * 179.97438 * 14 13 9 17 17 C 1.39673 * 120.10227 * 359.72492 * 16 14 13 18 18 C 1.38038 * 120.03446 * 179.74439 * 17 16 14 19 19 C 1.38175 * 120.24993 * 0.55486 * 18 17 16 20 20 C 1.39187 * 120.19545 * 359.69678 * 19 18 17 21 21 S 1.76203 * 120.01673 * 180.02562 * 20 19 18 22 22 C 1.76202 * 99.99895 * 265.52552 * 21 20 19 23 23 H 1.08002 * 119.99895 * 5.12466 * 22 21 20 24 24 C 1.38727 * 119.99939 * 185.11776 * 22 21 20 25 25 N 1.31625 * 120.00092 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00103 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47276 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47194 * 120.00139 * 26 24 22 29 29 H 1.48498 * 109.47286 * 239.99959 * 26 24 22 30 30 C 1.38871 * 119.96400 * 0.02562 * 20 19 18 31 31 H 1.09005 * 109.47527 * 300.00662 * 1 2 3 32 32 H 1.09001 * 109.46802 * 60.00256 * 1 2 3 33 33 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47147 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47054 * 299.99590 * 3 2 1 36 36 H 1.09002 * 109.46952 * 59.99263 * 3 2 1 37 37 H 1.09007 * 109.46785 * 300.00177 * 4 2 1 38 38 H 1.08998 * 109.47373 * 59.99721 * 4 2 1 39 39 H 1.08999 * 109.47387 * 180.02562 * 4 2 1 40 40 H 0.96706 * 113.99725 * 59.99468 * 7 5 2 41 41 H 1.08998 * 109.47109 * 55.00049 * 8 5 2 42 42 H 1.09004 * 109.47247 * 295.00400 * 8 5 2 43 43 H 1.08996 * 109.46951 * 185.00116 * 11 9 8 44 44 H 1.08994 * 109.47199 * 64.99600 * 11 9 8 45 45 H 0.96702 * 114.00036 * 179.97438 * 12 11 9 46 46 H 0.96999 * 120.00325 * 25.00336 * 13 9 8 47 47 H 1.08001 * 119.97811 * 359.97438 * 17 16 14 48 48 H 1.08003 * 119.87546 * 180.27163 * 18 17 16 49 49 H 1.08000 * 119.90278 * 179.72318 * 19 18 17 50 50 H 0.97000 * 120.00157 * 179.97438 * 25 24 22 51 51 H 1.07997 * 120.12525 * 180.02562 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 3.1299 -0.7208 1.2496 7 8 1.5636 -0.0474 2.4161 8 6 1.5300 -2.1636 1.2494 9 6 2.1399 -2.9201 2.4311 10 1 3.2264 -2.8433 2.3899 11 6 1.7298 -4.3925 2.3605 12 8 0.3053 -4.4876 2.2973 13 7 1.6565 -2.3381 3.6855 14 6 2.3870 -2.4618 4.8115 15 8 3.4467 -3.0566 4.7861 16 6 1.8993 -1.8738 6.0775 17 6 0.6846 -1.1849 6.1078 18 6 0.2281 -0.6411 7.2916 19 6 0.9741 -0.7652 8.4480 20 6 2.1884 -1.4451 8.4281 21 16 3.1356 -1.6011 9.9057 22 6 4.2154 -0.2206 9.7241 23 1 4.0835 0.4632 8.8986 24 6 5.2349 -0.0120 10.6415 25 7 5.3958 -0.8456 11.6474 26 14 6.3792 1.4518 10.4495 27 1 5.9892 2.2305 9.2466 28 1 6.2816 2.3176 11.6521 29 1 7.7761 0.9716 10.2974 30 6 2.6531 -2.0005 7.2431 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7490 -1.2490 38 1 1.6767 -0.2075 -2.1391 39 1 3.1300 -0.7216 -1.2489 40 1 0.5995 -0.0092 2.4821 41 1 1.8183 -2.6510 0.3181 42 1 0.4436 -2.1649 1.3389 43 1 2.0895 -4.9128 3.2482 44 1 2.1642 -4.8484 1.4710 45 1 -0.0266 -5.3947 2.2501 46 1 0.8107 -1.8637 3.7059 47 1 0.1006 -1.0808 5.2053 48 1 -0.7136 -0.1127 7.3130 49 1 0.6137 -0.3337 9.3701 50 1 6.1089 -0.7000 12.2887 51 1 3.5947 -2.5290 7.2248 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000241862521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -157.421654 kcal Electronic energy + Delta-G solvation = -31534.643900 eV Core-core repulsion = 27330.292681 eV Total energy + Delta-G solvation = -4204.351219 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42708 -40.22195 -39.13472 -37.91631 -35.92605 -35.34813 -34.66108 -33.05047 -31.92784 -31.27530 -28.80122 -28.19027 -27.77437 -27.75159 -25.28531 -24.39156 -23.65881 -22.06751 -21.49637 -20.00441 -19.95907 -18.97027 -18.44570 -17.52574 -17.24978 -16.94481 -16.88740 -16.63339 -16.42370 -16.07068 -15.88524 -15.53467 -15.32529 -15.07218 -14.87457 -14.76794 -14.64208 -14.55321 -14.02240 -13.76235 -13.35699 -13.25973 -13.14385 -13.09156 -12.99634 -12.98104 -12.89823 -12.65408 -12.62855 -12.39564 -12.31573 -12.08512 -11.99638 -11.73294 -11.64201 -11.26439 -11.26001 -11.12069 -10.92429 -10.73345 -10.61629 -10.08467 -9.81045 -9.66120 -8.80570 -8.40027 -6.19715 -0.13020 0.28351 1.28771 1.35110 1.45516 1.66599 1.86308 2.15483 2.24663 2.84709 2.92703 3.34701 3.39693 3.41846 3.65810 3.76850 3.81406 3.96667 4.00068 4.05201 4.08863 4.17031 4.26300 4.38558 4.43946 4.47147 4.52035 4.61132 4.65486 4.72054 4.77603 4.84842 4.87496 4.90883 4.94924 4.97045 5.09337 5.09912 5.19082 5.22068 5.26921 5.34478 5.36430 5.38630 5.48535 5.51376 5.53090 5.59371 5.89776 6.15447 6.58462 6.85935 6.91426 7.00357 7.24416 8.67326 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.002396 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.904794 B =11681.079699 C =12646.191308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.145 4.145 5 C 0.117 3.883 6 H 0.074 0.926 7 O -0.567 6.567 8 C -0.141 4.141 9 C 0.147 3.853 10 H 0.075 0.925 11 C 0.069 3.931 12 O -0.573 6.573 13 N -0.678 5.678 14 C 0.562 3.438 15 O -0.591 6.591 16 C -0.154 4.154 17 C -0.059 4.059 18 C -0.121 4.121 19 C -0.065 4.065 20 C -0.129 4.129 21 S -0.096 6.096 22 C -0.534 4.534 23 H 0.065 0.935 24 C 0.019 3.981 25 N -0.906 5.906 26 Si 0.992 3.008 27 H -0.268 1.268 28 H -0.264 1.264 29 H -0.272 1.272 30 C -0.048 4.048 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.379 0.621 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.024 0.976 44 H 0.076 0.924 45 H 0.395 0.605 46 H 0.412 0.588 47 H 0.170 0.830 48 H 0.176 0.824 49 H 0.135 0.865 50 H 0.274 0.726 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 -0.633 -29.379 33.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 C -0.195 4.195 4 C -0.202 4.202 5 C 0.058 3.942 6 H 0.092 0.908 7 O -0.374 6.374 8 C -0.179 4.179 9 C 0.043 3.957 10 H 0.093 0.907 11 C -0.011 4.011 12 O -0.381 6.381 13 N -0.330 5.330 14 C 0.350 3.650 15 O -0.473 6.473 16 C -0.159 4.159 17 C -0.078 4.078 18 C -0.140 4.140 19 C -0.086 4.086 20 C -0.240 4.240 21 S 0.139 5.861 22 C -0.681 4.681 23 H 0.083 0.917 24 C -0.186 4.186 25 N -0.543 5.543 26 Si 0.814 3.186 27 H -0.192 1.192 28 H -0.188 1.188 29 H -0.197 1.197 30 C -0.070 4.070 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.228 0.772 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.245 0.755 46 H 0.251 0.749 47 H 0.187 0.813 48 H 0.193 0.807 49 H 0.153 0.847 50 H 0.083 0.917 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.194 -1.171 -28.246 32.095 hybrid contribution 0.641 0.792 -0.540 1.153 sum -14.553 -0.378 -28.786 32.258 Atomic orbital electron populations 1.21948 0.93143 1.02777 1.02552 1.21137 0.97100 0.95696 0.95370 1.21788 1.00269 0.95715 1.01748 1.21931 1.00891 1.00868 0.96503 1.21934 0.97989 0.89875 0.84431 0.90804 1.86703 1.27397 1.79367 1.43942 1.22550 1.02817 0.95292 0.97239 1.21133 0.98934 0.91763 0.83911 0.90690 1.22499 0.82281 0.96110 1.00162 1.86367 1.19956 1.34340 1.97423 1.45519 1.24273 1.56229 1.06934 1.18351 0.83463 0.78674 0.84484 1.90727 1.24860 1.45152 1.86553 1.20007 0.98288 1.04786 0.92806 1.21656 0.92991 0.93476 0.99651 1.21542 1.01203 1.00294 0.91001 1.22053 0.92427 0.93998 1.00115 1.22476 0.99832 1.03061 0.98660 1.83435 1.40098 1.41573 1.21000 1.23076 1.18210 1.11389 1.15433 0.91702 1.26004 0.98127 1.00424 0.94041 1.70114 1.32505 1.37692 1.13941 0.85001 0.77502 0.77362 0.78740 1.19196 1.18846 1.19686 1.21601 0.97951 0.95676 0.91742 0.91968 0.92092 0.91186 0.93988 0.92144 0.92848 0.91123 0.91954 0.93107 0.77152 0.87670 0.88325 0.95758 0.90579 0.75544 0.74919 0.81280 0.80710 0.84746 0.91685 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.81 71.98 0.56 -0.45 16 2 C -0.09 -0.93 0.63 -52.18 -0.03 -0.96 16 3 C -0.14 -1.80 8.33 71.98 0.60 -1.20 16 4 C -0.14 -1.24 8.13 71.98 0.59 -0.66 16 5 C 0.12 1.58 2.30 30.59 0.07 1.65 16 6 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 7 O -0.57 -9.00 10.54 -148.98 -1.57 -10.57 16 8 C -0.14 -1.55 3.53 30.59 0.11 -1.45 16 9 C 0.15 2.73 2.37 44.99 0.11 2.84 16 10 H 0.08 1.79 7.58 -2.39 -0.02 1.77 16 11 C 0.07 1.12 6.85 71.98 0.49 1.62 16 12 O -0.57 -7.36 12.83 -148.98 -1.91 -9.27 16 13 N -0.68 -14.86 3.77 -445.39 -1.68 -16.54 16 14 C 0.56 18.82 7.74 86.79 0.67 19.49 16 15 O -0.59 -25.09 16.01 -3.86 -0.06 -25.15 16 16 C -0.15 -5.37 5.87 -20.11 -0.12 -5.49 16 17 C -0.06 -1.48 9.54 22.57 0.22 -1.26 16 18 C -0.12 -3.12 10.02 22.21 0.22 -2.89 16 19 C -0.07 -2.36 9.79 22.48 0.22 -2.14 16 20 C -0.13 -5.95 5.45 22.65 0.12 -5.83 16 21 S -0.10 -5.40 21.41 -56.49 -1.21 -6.61 16 22 C -0.53 -32.32 9.46 67.94 0.64 -31.68 16 23 H 0.06 3.92 7.79 -2.91 -0.02 3.90 16 24 C 0.02 1.13 5.49 84.84 0.47 1.59 16 25 N -0.91 -55.78 13.22 21.64 0.29 -55.50 16 26 Si 0.99 45.96 29.55 68.60 2.03 47.99 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 29 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 30 C -0.05 -2.14 9.34 22.70 0.21 -1.93 16 31 H 0.06 0.38 6.78 -2.38 -0.02 0.36 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.38 6.55 -2.39 -0.02 0.37 16 34 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.80 7.68 -2.39 -0.02 0.78 16 37 H 0.07 0.46 6.32 -2.38 -0.02 0.44 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.38 3.25 7.08 -74.05 -0.52 2.72 16 41 H 0.11 0.86 6.17 -2.39 -0.01 0.84 16 42 H 0.10 0.87 6.30 -2.38 -0.02 0.86 16 43 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.40 2.21 9.12 -74.06 -0.68 1.53 16 46 H 0.41 6.57 5.56 -92.71 -0.52 6.05 16 47 H 0.17 2.42 6.40 -2.91 -0.02 2.40 16 48 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 49 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 50 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 51 H 0.10 5.08 7.65 -2.91 -0.02 5.05 16 Total: -1.00 -83.72 421.81 0.29 -83.43 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.74 Total: 20.97 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 5.15 Total: -28.76 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.39 Total: -72.04 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -3.54 Total: -44.99 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -1.21 Total: -6.61 kcal Total: -83.72 0.29 -83.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241862521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.988 kcal (2) G-P(sol) polarization free energy of solvation -83.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds