Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47382 * 2 1 4 4 C 1.53005 * 109.47326 * 239.99862 * 2 1 3 5 5 C 1.53002 * 109.47124 * 120.00452 * 2 1 3 6 6 H 1.09005 * 109.46567 * 299.99948 * 5 2 1 7 7 O 1.42892 * 109.47531 * 180.02562 * 5 2 1 8 8 C 1.53003 * 109.47255 * 59.99342 * 5 2 1 9 9 C 1.52999 * 109.46916 * 185.00191 * 8 5 2 10 10 H 1.08997 * 109.47447 * 304.99964 * 9 8 5 11 11 C 1.53008 * 109.46650 * 185.00479 * 9 8 5 12 12 O 1.42902 * 109.46883 * 304.99834 * 11 9 8 13 13 N 1.46501 * 109.47179 * 65.00746 * 9 8 5 14 14 C 1.34768 * 119.99805 * 205.00059 * 13 9 8 15 15 O 1.21553 * 120.00527 * 359.97438 * 14 13 9 16 16 C 1.47864 * 120.00005 * 180.02562 * 14 13 9 17 17 C 1.39676 * 120.10015 * 359.71609 * 16 14 13 18 18 C 1.38038 * 120.04096 * 179.75057 * 17 16 14 19 19 C 1.38176 * 120.24037 * 0.55584 * 18 17 16 20 20 C 1.39182 * 120.20636 * 359.69691 * 19 18 17 21 21 S 1.76200 * 120.02519 * 180.02562 * 20 19 18 22 22 C 1.76200 * 100.00057 * 265.52950 * 21 20 19 23 23 H 1.07995 * 119.99914 * 5.11915 * 22 21 20 24 24 C 1.38723 * 119.99986 * 185.11575 * 22 21 20 25 25 N 1.31627 * 119.99966 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00243 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46748 * 59.99877 * 26 24 22 28 28 H 1.48498 * 109.47414 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46942 * 300.00453 * 26 24 22 30 30 C 1.38878 * 119.95501 * 0.02562 * 20 19 18 31 31 H 1.08995 * 109.47356 * 300.00096 * 1 2 3 32 32 H 1.09003 * 109.46777 * 60.00000 * 1 2 3 33 33 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47152 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47406 * 300.00218 * 3 2 1 36 36 H 1.09005 * 109.46687 * 60.00150 * 3 2 1 37 37 H 1.08996 * 109.47338 * 300.00562 * 4 2 1 38 38 H 1.08999 * 109.46587 * 60.00317 * 4 2 1 39 39 H 1.08999 * 109.47285 * 180.02562 * 4 2 1 40 40 H 0.96699 * 113.99724 * 300.00005 * 7 5 2 41 41 H 1.08993 * 109.47144 * 305.00694 * 8 5 2 42 42 H 1.09007 * 109.46670 * 65.00223 * 8 5 2 43 43 H 1.08994 * 109.46967 * 65.00053 * 11 9 8 44 44 H 1.08997 * 109.46557 * 185.00506 * 11 9 8 45 45 H 0.96700 * 113.99474 * 180.02562 * 12 11 9 46 46 H 0.97003 * 119.99517 * 24.99173 * 13 9 8 47 47 H 1.08005 * 119.98075 * 359.97438 * 17 16 14 48 48 H 1.08001 * 119.88365 * 180.27615 * 18 17 16 49 49 H 1.08002 * 119.89843 * 179.72746 * 19 18 17 50 50 H 0.97001 * 120.00075 * 180.02562 * 25 24 22 51 51 H 1.07998 * 120.12314 * 180.02562 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.6766 -0.2075 2.1392 7 8 3.4689 -0.7209 1.2496 8 6 1.5298 -2.1638 1.2492 9 6 1.9346 -2.8479 2.5565 10 1 3.0135 -2.7685 2.6893 11 6 1.5344 -4.3238 2.5049 12 8 0.1391 -4.4291 2.2149 13 7 1.2551 -2.1966 3.6792 14 6 1.7908 -2.2515 4.9146 15 8 2.8376 -2.8418 5.0975 16 6 1.1047 -1.5947 6.0478 17 6 -0.0957 -0.9118 5.8392 18 6 -0.7378 -0.3034 6.8990 19 6 -0.1917 -0.3570 8.1671 20 6 1.0067 -1.0303 8.3856 21 16 1.6985 -1.0962 10.0047 22 6 2.7990 0.2775 9.9234 23 1 2.8069 0.9121 9.0496 24 6 3.6552 0.5439 10.9819 25 7 3.6459 -0.2298 12.0467 26 14 4.8224 1.9998 10.8954 27 1 4.0402 3.2528 10.7425 28 1 5.6249 2.0657 12.1432 29 1 5.7303 1.8379 9.7315 30 6 1.6569 -1.6502 7.3264 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 3.8625 -1.1623 0.4845 41 1 0.4436 -2.1651 1.1596 42 1 1.9645 -2.7029 0.4073 43 1 2.1065 -4.8283 1.7264 44 1 1.7415 -4.7902 3.4681 45 1 -0.1851 -5.3389 2.1673 46 1 0.4196 -1.7258 3.5332 47 1 -0.5236 -0.8627 4.8488 48 1 -1.6681 0.2202 6.7356 49 1 -0.6965 0.1247 8.9915 50 1 4.2443 -0.0433 12.7870 51 1 2.5867 -2.1737 7.4929 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241862522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = -133.865381 kcal Electronic energy + Delta-G solvation = -31354.043498 eV Core-core repulsion = 27150.713756 eV Total energy + Delta-G solvation = -4203.329742 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38816 -39.38977 -37.97231 -37.07652 -35.12450 -34.74351 -32.47792 -31.89603 -30.56182 -30.11212 -28.20458 -27.77999 -27.25228 -25.53922 -24.20852 -23.56304 -22.29582 -21.06691 -20.33454 -19.46165 -18.35841 -17.71481 -17.37195 -16.83981 -16.13822 -15.72667 -15.70865 -15.51915 -15.18985 -14.83657 -14.79756 -14.48593 -14.36452 -14.17426 -14.06584 -13.71895 -13.40996 -13.28090 -12.91579 -12.82691 -12.57475 -12.43428 -12.27857 -12.27752 -12.00032 -11.80883 -11.63480 -11.54661 -11.37566 -11.13631 -11.12858 -11.08541 -11.04149 -10.70740 -10.67788 -10.33799 -9.96839 -9.94037 -9.69959 -9.12323 -9.10161 -8.97202 -8.54200 -7.99854 -6.68312 -6.25560 -3.99455 1.21394 1.70767 3.08156 3.13597 3.24543 3.26793 3.29299 3.50239 3.96527 4.03126 4.13438 4.21734 4.30276 4.36691 4.53460 4.65014 4.73208 4.85682 4.92775 5.07221 5.10193 5.11313 5.13628 5.16865 5.21010 5.27917 5.31537 5.38451 5.40604 5.50580 5.50965 5.53987 5.56863 5.66257 5.67943 5.75745 5.82984 5.88144 5.91530 6.00601 6.02478 6.06200 6.29423 6.45058 6.63468 6.67714 6.97139 7.23284 7.31903 7.39308 7.57068 7.60439 8.35623 8.35975 9.20208 10.81127 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.002374 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.913467 B =11792.503688 C =12726.619108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.149 4.149 5 C 0.114 3.886 6 H 0.099 0.901 7 O -0.553 6.553 8 C -0.157 4.157 9 C 0.153 3.847 10 H 0.107 0.893 11 C 0.062 3.938 12 O -0.570 6.570 13 N -0.718 5.718 14 C 0.565 3.435 15 O -0.536 6.536 16 C -0.153 4.153 17 C -0.089 4.089 18 C -0.141 4.141 19 C -0.056 4.056 20 C -0.107 4.107 21 S -0.035 6.035 22 C -0.519 4.519 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.871 5.871 26 Si 0.920 3.080 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.272 1.272 30 C -0.019 4.019 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.368 0.632 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.377 0.623 46 H 0.399 0.601 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.270 0.730 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 -3.653 -27.762 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.206 4.206 5 C 0.055 3.945 6 H 0.117 0.883 7 O -0.358 6.358 8 C -0.195 4.195 9 C 0.048 3.952 10 H 0.125 0.875 11 C -0.017 4.017 12 O -0.375 6.375 13 N -0.371 5.371 14 C 0.354 3.646 15 O -0.413 6.413 16 C -0.158 4.158 17 C -0.108 4.108 18 C -0.161 4.161 19 C -0.077 4.077 20 C -0.218 4.218 21 S 0.199 5.801 22 C -0.666 4.666 23 H 0.093 0.907 24 C -0.136 4.136 25 N -0.506 5.506 26 Si 0.746 3.254 27 H -0.198 1.198 28 H -0.207 1.207 29 H -0.198 1.198 30 C -0.040 4.040 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.216 0.784 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.224 0.776 46 H 0.234 0.766 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.149 0.851 50 H 0.080 0.920 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.210 -3.869 -25.967 27.507 hybrid contribution 0.504 0.986 -1.728 2.052 sum -7.705 -2.883 -27.695 28.891 Atomic orbital electron populations 1.21930 0.93968 1.02217 1.02151 1.21224 0.96374 0.96638 0.95828 1.21796 1.01736 0.94500 1.01540 1.21954 1.00976 1.00479 0.97200 1.22016 0.80876 0.94084 0.97568 0.88277 1.86683 1.18983 1.80991 1.49112 1.22615 1.03572 0.96473 0.96835 1.20989 0.98754 0.89756 0.85677 0.87510 1.22687 0.82075 0.97210 0.99765 1.86436 1.24240 1.32327 1.94470 1.45826 1.26992 1.56882 1.07386 1.18405 0.84270 0.79368 0.82573 1.90763 1.22866 1.43492 1.84219 1.19869 0.97555 1.04320 0.94074 1.21128 0.94273 0.96900 0.98495 1.21047 1.00462 1.01602 0.93006 1.21949 0.94546 0.94556 0.96632 1.22842 0.97490 0.99203 1.02217 1.83584 1.50225 1.43164 1.03127 1.22794 1.24318 1.12762 1.06776 0.90676 1.24995 0.96524 0.97409 0.94622 1.69980 1.37352 1.37285 1.06013 0.86183 0.80094 0.81349 0.77748 1.19821 1.20749 1.19755 1.21943 0.98237 0.93912 0.89955 0.92341 0.92463 0.91985 0.91962 0.92896 0.92588 0.92184 0.92286 0.92515 0.78430 0.89106 0.90117 0.93060 0.92740 0.77621 0.76596 0.86618 0.85916 0.85121 0.92029 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.13 37.16 0.30 -0.57 16 2 C -0.10 -0.66 0.63 -154.51 -0.10 -0.76 16 3 C -0.14 -1.04 8.33 37.16 0.31 -0.73 16 4 C -0.15 -0.78 7.82 37.16 0.29 -0.49 16 5 C 0.11 0.94 2.24 -26.73 -0.06 0.88 16 6 H 0.10 1.00 7.62 -51.93 -0.40 0.60 16 7 O -0.55 -5.37 12.08 -35.23 -0.43 -5.80 16 8 C -0.16 -1.15 3.43 -26.73 -0.09 -1.24 16 9 C 0.15 1.58 2.32 -67.93 -0.16 1.42 16 10 H 0.11 1.33 7.13 -51.93 -0.37 0.96 16 11 C 0.06 0.57 6.85 37.16 0.25 0.83 16 12 O -0.57 -4.71 12.83 -35.23 -0.45 -5.16 16 13 N -0.72 -8.63 4.35 -54.74 -0.24 -8.87 16 14 C 0.57 9.37 7.74 -12.32 -0.10 9.28 16 15 O -0.54 -10.75 16.01 5.32 0.09 -10.67 16 16 C -0.15 -2.67 5.87 -104.99 -0.62 -3.28 16 17 C -0.09 -1.26 9.54 -39.12 -0.37 -1.64 16 18 C -0.14 -2.08 10.02 -39.68 -0.40 -2.48 16 19 C -0.06 -1.02 9.79 -39.25 -0.38 -1.40 16 20 C -0.11 -2.33 5.45 -38.99 -0.21 -2.55 16 21 S -0.04 -0.93 21.41 -107.50 -2.30 -3.23 16 22 C -0.52 -14.88 9.46 30.91 0.29 -14.59 16 23 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 24 C 0.07 2.09 5.49 -17.46 -0.10 1.99 16 25 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 26 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 30 C -0.02 -0.39 9.34 -38.92 -0.36 -0.76 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.35 6.32 -51.93 -0.33 0.02 16 34 H 0.06 0.51 7.68 -51.93 -0.40 0.12 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.28 6.54 -51.93 -0.34 -0.06 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.27 6.78 -51.93 -0.35 -0.08 16 40 H 0.37 2.32 7.33 45.56 0.33 2.65 16 41 H 0.09 0.66 5.76 -51.93 -0.30 0.36 16 42 H 0.08 0.48 6.71 -51.92 -0.35 0.13 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.38 1.72 9.12 45.56 0.42 2.13 16 46 H 0.40 3.99 6.63 -40.82 -0.27 3.72 16 47 H 0.12 1.20 6.40 -52.48 -0.34 0.87 16 48 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 49 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 50 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 51 H 0.14 3.13 7.65 -52.49 -0.40 2.73 16 LS Contribution 424.08 15.07 6.39 6.39 Total: -1.00 -34.90 424.08 -9.17 -44.06 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.44 Total: 7.64 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.50 Total: -16.10 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.50 Total: -33.91 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.79 Total: -21.63 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.90 -9.17 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241862522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.801 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds