Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 C 1.53007 * 109.47196 * 240.00241 * 2 1 3 5 5 C 1.52992 * 109.47625 * 120.00073 * 2 1 3 6 6 H 1.09000 * 109.47778 * 180.02562 * 5 2 1 7 7 O 1.42907 * 109.47042 * 300.00044 * 5 2 1 8 8 C 1.53002 * 109.46962 * 59.99868 * 5 2 1 9 9 C 1.53004 * 109.46930 * 175.00075 * 8 5 2 10 10 H 1.09000 * 109.47324 * 55.00194 * 9 8 5 11 11 C 1.52998 * 109.46875 * 175.00088 * 9 8 5 12 12 O 1.42896 * 109.47584 * 55.00168 * 11 9 8 13 13 N 1.46492 * 109.47185 * 295.00120 * 9 8 5 14 14 C 1.34784 * 120.00217 * 155.00420 * 13 9 8 15 15 O 1.21552 * 119.99611 * 359.97438 * 14 13 9 16 16 C 1.47865 * 120.00304 * 179.97438 * 14 13 9 17 17 C 1.39665 * 120.09843 * 359.97438 * 16 14 13 18 18 C 1.38046 * 120.03818 * 180.02562 * 17 16 14 19 19 C 1.38176 * 120.23908 * 359.76309 * 18 17 16 20 20 C 1.39179 * 120.20513 * 0.51284 * 19 18 17 21 21 S 1.76194 * 120.02163 * 179.73865 * 20 19 18 22 22 C 1.76196 * 100.00182 * 265.25136 * 21 20 19 23 23 H 1.08000 * 120.00393 * 5.12593 * 22 21 20 24 24 C 1.38736 * 120.00006 * 185.12109 * 22 21 20 25 25 N 1.31616 * 119.99932 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99686 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47076 * 59.99906 * 26 24 22 28 28 H 1.48496 * 109.46794 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46962 * 299.99839 * 26 24 22 30 30 C 1.38875 * 119.95687 * 359.47003 * 20 19 18 31 31 H 1.08999 * 109.46610 * 299.99961 * 1 2 3 32 32 H 1.08993 * 109.47321 * 59.99695 * 1 2 3 33 33 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47110 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47080 * 300.00393 * 3 2 1 36 36 H 1.08995 * 109.47392 * 59.99995 * 3 2 1 37 37 H 1.08995 * 109.46683 * 300.00460 * 4 2 1 38 38 H 1.09002 * 109.46982 * 59.99583 * 4 2 1 39 39 H 1.08995 * 109.47053 * 179.97438 * 4 2 1 40 40 H 0.96693 * 113.99779 * 59.99923 * 7 5 2 41 41 H 1.08997 * 109.47217 * 55.00213 * 8 5 2 42 42 H 1.08995 * 109.47254 * 295.00216 * 8 5 2 43 43 H 1.09007 * 109.47134 * 175.00181 * 11 9 8 44 44 H 1.09000 * 109.47529 * 295.00194 * 11 9 8 45 45 H 0.96692 * 114.00791 * 180.02562 * 12 11 9 46 46 H 0.96996 * 120.00373 * 334.99555 * 13 9 8 47 47 H 1.08002 * 119.98607 * 0.02562 * 17 16 14 48 48 H 1.08000 * 119.87957 * 180.02562 * 18 17 16 49 49 H 1.08004 * 119.89942 * 180.25265 * 19 18 17 50 50 H 0.97004 * 119.99833 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.12505 * 180.25503 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2491 6 1 3.1301 -0.7208 1.2494 7 8 1.5638 -0.0476 2.4160 8 6 1.5301 -2.1637 1.2491 9 6 2.1403 -2.9203 2.4307 10 1 1.9266 -2.3838 3.3552 11 6 1.5360 -4.3240 2.5043 12 8 1.7145 -4.9859 1.2506 13 7 3.5904 -3.0219 2.2492 14 6 4.3949 -3.1718 3.3202 15 8 3.9171 -3.2223 4.4367 16 6 5.8585 -3.2749 3.1369 17 6 6.4096 -3.2177 1.8549 18 6 7.7761 -3.3146 1.6851 19 6 8.6046 -3.4635 2.7809 20 6 8.0658 -3.5274 4.0626 21 16 9.1261 -3.7242 5.4559 22 6 9.0633 -5.4750 5.6434 23 1 8.5345 -6.0771 4.9193 24 6 9.6931 -6.0803 6.7213 25 7 10.3380 -5.3466 7.6034 26 14 9.6270 -7.9366 6.9197 27 1 10.2442 -8.5834 5.7340 28 1 10.3715 -8.3305 8.1427 29 1 8.2122 -8.3714 7.0404 30 6 6.6922 -3.4304 4.2430 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6766 -1.7488 -1.2493 38 1 1.6767 -0.2074 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 0.5999 -0.0094 2.4821 41 1 1.8184 -2.6510 0.3178 42 1 0.4439 -2.1651 1.3387 43 1 2.0335 -4.8931 3.2897 44 1 0.4717 -4.2501 2.7278 45 1 1.3542 -5.8828 1.2244 46 1 3.9717 -2.9814 1.3582 47 1 5.7663 -3.0976 0.9957 48 1 8.1996 -3.2697 0.6926 49 1 9.6733 -3.5347 2.6421 50 1 10.7780 -5.7698 8.3573 51 1 6.2715 -3.4756 5.2367 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241862523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = -133.974037 kcal Electronic energy + Delta-G solvation = -31284.837077 eV Core-core repulsion = 27081.502624 eV Total energy + Delta-G solvation = -4203.334454 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39186 -39.39879 -37.97132 -37.06598 -35.13652 -34.74416 -32.48785 -31.89676 -30.56212 -30.11495 -28.20656 -27.79555 -27.26477 -25.54787 -24.20879 -23.56862 -22.29682 -21.06746 -20.33327 -19.47783 -18.36023 -17.70054 -17.38008 -16.84801 -16.14078 -15.73013 -15.71384 -15.52930 -15.17842 -14.84588 -14.81776 -14.49610 -14.36211 -14.17089 -14.07347 -13.70309 -13.43268 -13.29082 -12.89846 -12.84226 -12.58811 -12.44610 -12.29502 -12.27811 -12.02338 -11.80911 -11.63412 -11.56402 -11.38009 -11.14706 -11.14148 -11.09010 -11.05514 -10.72293 -10.68771 -10.32218 -9.98042 -9.94823 -9.69669 -9.13573 -9.10447 -8.97512 -8.54195 -7.99713 -6.68668 -6.26352 -4.00074 1.21383 1.70773 3.08161 3.13331 3.23245 3.25050 3.27942 3.49647 3.95601 4.04025 4.12941 4.20039 4.29893 4.35307 4.51868 4.64425 4.72723 4.84840 4.92618 5.07625 5.09554 5.11030 5.13458 5.16758 5.19832 5.27805 5.30394 5.37802 5.39501 5.50105 5.50210 5.53170 5.55771 5.65325 5.66541 5.75509 5.81864 5.87291 5.91481 5.98805 6.01218 6.05616 6.29434 6.45233 6.63471 6.67704 6.97103 7.23286 7.33887 7.37069 7.57071 7.59308 8.34547 8.35985 9.19182 10.80311 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.002172 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.169582 B =12886.480830 C =13611.407602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.138 4.138 4 C -0.146 4.146 5 C 0.114 3.886 6 H 0.099 0.901 7 O -0.553 6.553 8 C -0.157 4.157 9 C 0.154 3.846 10 H 0.107 0.893 11 C 0.061 3.939 12 O -0.570 6.570 13 N -0.718 5.718 14 C 0.565 3.435 15 O -0.536 6.536 16 C -0.153 4.153 17 C -0.089 4.089 18 C -0.141 4.141 19 C -0.056 4.056 20 C -0.107 4.107 21 S -0.035 6.035 22 C -0.519 4.519 23 H 0.075 0.925 24 C 0.073 3.927 25 N -0.870 5.870 26 Si 0.921 3.079 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.273 1.273 30 C -0.019 4.019 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.369 0.631 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.378 0.622 46 H 0.399 0.601 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.131 0.869 50 H 0.270 0.730 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.845 8.117 -19.463 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.203 4.203 5 C 0.055 3.945 6 H 0.117 0.883 7 O -0.358 6.358 8 C -0.195 4.195 9 C 0.049 3.951 10 H 0.125 0.875 11 C -0.018 4.018 12 O -0.375 6.375 13 N -0.371 5.371 14 C 0.354 3.646 15 O -0.413 6.413 16 C -0.158 4.158 17 C -0.108 4.108 18 C -0.161 4.161 19 C -0.077 4.077 20 C -0.217 4.217 21 S 0.200 5.800 22 C -0.667 4.667 23 H 0.093 0.907 24 C -0.136 4.136 25 N -0.506 5.506 26 Si 0.746 3.254 27 H -0.198 1.198 28 H -0.207 1.207 29 H -0.198 1.198 30 C -0.041 4.041 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.216 0.784 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.224 0.776 46 H 0.234 0.766 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.149 0.851 50 H 0.080 0.920 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.547 9.501 -17.840 28.118 hybrid contribution -1.462 -2.712 -1.080 3.265 sum -21.010 6.789 -18.920 29.077 Atomic orbital electron populations 1.21953 0.94567 1.01998 1.02095 1.21228 0.96107 0.96717 0.96036 1.21792 1.01166 0.94770 1.01795 1.21933 1.01342 1.00434 0.96572 1.22009 0.99314 0.89252 0.83894 0.88269 1.86672 1.26338 1.79200 1.43624 1.22617 1.01258 0.96032 0.99617 1.20982 0.80108 0.93678 1.00358 0.87512 1.22691 0.98874 0.94147 0.86092 1.86425 1.84032 1.32426 1.34612 1.45828 1.06227 1.75446 1.09593 1.18410 0.86586 0.75395 0.84228 1.90763 1.76650 1.49751 1.24169 1.19865 0.92238 1.08968 0.94731 1.21127 0.95452 0.98959 0.95267 1.21049 0.93274 1.02972 0.98812 1.21946 1.00256 0.93966 0.91527 1.22838 0.97138 1.01456 1.00317 1.83596 1.55355 1.11096 1.29992 1.22791 1.40222 0.90086 1.13578 0.90709 1.25000 0.94604 0.99498 0.94479 1.69977 1.32137 1.35859 1.12580 0.86183 0.78556 0.82852 0.77762 1.19832 1.20735 1.19835 1.21942 0.92249 0.91362 0.98504 0.92514 0.92292 0.92175 0.92602 0.92910 0.91973 0.91975 0.92464 0.92342 0.78403 0.89106 0.90115 0.92728 0.93068 0.77573 0.76602 0.86616 0.85915 0.85122 0.92019 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 7.82 37.16 0.29 -0.45 16 2 C -0.10 -0.62 0.63 -154.51 -0.10 -0.72 16 3 C -0.14 -0.96 8.33 37.16 0.31 -0.65 16 4 C -0.15 -0.84 8.13 37.16 0.30 -0.53 16 5 C 0.11 0.89 2.24 -26.73 -0.06 0.83 16 6 H 0.10 0.94 7.62 -51.93 -0.40 0.55 16 7 O -0.55 -5.06 12.08 -35.23 -0.43 -5.49 16 8 C -0.16 -1.14 3.43 -26.73 -0.09 -1.23 16 9 C 0.15 1.58 2.32 -67.93 -0.16 1.42 16 10 H 0.11 1.31 7.13 -51.93 -0.37 0.94 16 11 C 0.06 0.59 6.85 37.16 0.25 0.84 16 12 O -0.57 -4.98 12.83 -35.23 -0.45 -5.43 16 13 N -0.72 -8.63 4.35 -54.75 -0.24 -8.87 16 14 C 0.57 9.37 7.74 -12.32 -0.10 9.27 16 15 O -0.54 -10.75 16.00 5.32 0.09 -10.67 16 16 C -0.15 -2.66 5.87 -105.00 -0.62 -3.28 16 17 C -0.09 -1.27 9.54 -39.12 -0.37 -1.64 16 18 C -0.14 -2.08 10.02 -39.67 -0.40 -2.48 16 19 C -0.06 -1.02 9.79 -39.25 -0.38 -1.41 16 20 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16 21 S -0.03 -0.92 21.40 -107.50 -2.30 -3.22 16 22 C -0.52 -14.83 9.46 30.92 0.29 -14.54 16 23 H 0.07 2.12 7.79 -52.49 -0.41 1.71 16 24 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 25 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 26 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 30 C -0.02 -0.39 9.34 -38.92 -0.36 -0.76 16 31 H 0.06 0.25 6.78 -51.93 -0.35 -0.10 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.28 6.55 -51.93 -0.34 -0.06 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.47 7.68 -51.93 -0.40 0.07 16 37 H 0.06 0.34 6.32 -51.93 -0.33 0.02 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.37 2.15 7.33 45.56 0.33 2.48 16 41 H 0.09 0.66 5.76 -51.93 -0.30 0.36 16 42 H 0.08 0.48 6.71 -51.93 -0.35 0.13 16 43 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.38 1.94 9.12 45.56 0.42 2.35 16 46 H 0.40 3.99 6.63 -40.82 -0.27 3.72 16 47 H 0.12 1.20 6.40 -52.49 -0.34 0.87 16 48 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 49 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.14 3.13 7.65 -52.49 -0.40 2.73 16 LS Contribution 424.08 15.07 6.39 6.39 Total: -1.00 -34.75 424.08 -9.17 -43.92 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.44 Total: 7.55 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.50 Total: -15.87 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.50 Total: -33.83 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.79 Total: -21.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.75 -9.17 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241862523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.053 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds