Wall clock time and date at job start Tue Mar 31 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46975 * 2 1 4 4 C 1.50696 * 109.46837 * 119.99835 * 2 1 3 5 5 O 1.21279 * 120.00190 * 95.55170 * 4 2 1 6 6 N 1.34776 * 120.00174 * 275.54499 * 4 2 1 7 7 C 1.46506 * 119.99881 * 0.02562 * 6 4 2 8 8 C 1.46503 * 120.00082 * 180.02562 * 6 4 2 9 9 C 1.50702 * 109.47023 * 90.00309 * 8 6 4 10 10 H 1.07999 * 119.99999 * 0.02562 * 9 8 6 11 11 C 1.37876 * 119.99679 * 180.02562 * 9 8 6 12 12 N 1.31508 * 119.99938 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47016 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47068 * 119.99594 * 13 11 9 16 16 H 1.48492 * 109.46889 * 239.99644 * 13 11 9 17 17 N 1.46896 * 109.47102 * 239.99975 * 2 1 3 18 18 C 1.47012 * 111.00117 * 52.46767 * 17 2 1 19 19 C 1.53104 * 109.26044 * 182.39239 * 18 17 2 20 20 O 1.43011 * 109.25609 * 303.15140 * 19 18 17 21 21 C 1.43013 * 113.73950 * 58.66574 * 20 19 18 22 22 H 1.09004 * 109.54434 * 61.28914 * 21 20 19 23 23 C 1.50703 * 109.50893 * 181.39201 * 21 20 19 24 24 C 1.38239 * 119.99228 * 219.78610 * 23 21 20 25 25 C 1.38213 * 120.01576 * 179.70051 * 24 23 21 26 26 C 1.38351 * 119.98521 * 0.28221 * 25 24 23 27 27 Cl 1.73603 * 120.01264 * 180.02562 * 26 25 24 28 28 C 1.38356 * 119.97438 * 359.97438 * 26 25 24 29 29 C 1.38217 * 119.98671 * 0.02562 * 28 26 25 30 30 C 1.47016 * 110.99889 * 176.09989 * 17 2 1 31 31 H 1.09007 * 109.47336 * 300.00443 * 1 2 3 32 32 H 1.09007 * 109.47060 * 60.00120 * 1 2 3 33 33 H 1.08994 * 109.47616 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47025 * 89.99966 * 7 6 4 35 35 H 1.09001 * 109.47049 * 209.99727 * 7 6 4 36 36 H 1.08995 * 109.47226 * 329.99871 * 7 6 4 37 37 H 1.08999 * 109.46584 * 210.00026 * 8 6 4 38 38 H 1.08993 * 109.46845 * 330.00116 * 8 6 4 39 39 H 0.97006 * 119.99853 * 180.02562 * 12 11 9 40 40 H 1.09003 * 109.50606 * 302.32648 * 18 17 2 41 41 H 1.08998 * 109.50994 * 62.45539 * 18 17 2 42 42 H 1.08999 * 109.49918 * 63.08494 * 19 18 17 43 43 H 1.09001 * 109.50544 * 183.16930 * 19 18 17 44 44 H 1.08004 * 119.98933 * 359.97438 * 24 23 21 45 45 H 1.07998 * 120.00640 * 180.25064 * 25 24 23 46 46 H 1.07997 * 120.00433 * 179.97438 * 28 26 25 47 47 H 1.07997 * 119.98983 * 180.02562 * 29 28 26 48 48 H 1.08994 * 109.50258 * 57.67552 * 30 17 2 49 49 H 1.08997 * 109.54464 * 297.56498 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3302 -1.8846 1.1737 6 7 2.1505 -0.0407 2.3941 7 6 1.7903 1.3777 2.4629 8 6 2.6393 -0.7312 3.5902 9 6 4.1401 -0.6128 3.6605 10 1 4.6760 -0.0765 2.8914 11 6 4.8287 -1.1892 4.7067 12 7 4.1760 -1.8418 5.6434 13 14 6.6890 -1.0430 4.7935 14 1 7.1794 -0.2658 3.6270 15 1 7.0730 -0.3483 6.0486 16 1 7.2935 -2.3992 4.7736 17 7 2.0197 -0.6925 -1.1994 18 6 1.4070 -0.1376 -2.4151 19 6 1.8980 -0.9253 -3.6328 20 8 3.3268 -0.8813 -3.6780 21 6 3.9565 -1.4144 -2.5099 22 1 3.6871 -2.4646 -2.3975 23 6 5.4524 -1.2902 -2.6435 24 6 6.2724 -2.3148 -2.2088 25 6 7.6441 -2.2041 -2.3368 26 6 8.1969 -1.0651 -2.8947 27 17 9.9197 -0.9255 -3.0564 28 6 7.3760 -0.0377 -3.3247 29 6 6.0043 -0.1496 -3.1962 30 6 3.4863 -0.6318 -1.2809 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 0.7367 1.4726 2.7258 35 1 2.3995 1.8710 3.2203 36 1 1.9665 1.8447 1.4940 37 1 2.1971 -0.2780 4.4774 38 1 2.3597 -1.7836 3.5419 39 1 4.6605 -2.2470 6.3797 40 1 0.3221 -0.2161 -2.3443 41 1 1.6907 0.9095 -2.5204 42 1 1.5680 -1.9610 -3.5533 43 1 1.4906 -0.4820 -4.5414 44 1 5.8408 -3.2038 -1.7732 45 1 8.2844 -3.0063 -2.0009 46 1 7.8069 0.8518 -3.7599 47 1 5.3635 0.6521 -3.5322 48 1 3.9192 -1.0709 -0.3822 49 1 3.8040 0.4073 -1.3677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249712292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:25 Heat of formation + Delta-G solvation = -41.819274 kcal Electronic energy + Delta-G solvation = -31781.593291 eV Core-core repulsion = 27542.096829 eV Total energy + Delta-G solvation = -4239.496462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 366.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45483 -39.38903 -38.48070 -36.60857 -35.86622 -34.76564 -32.83463 -32.66591 -31.21381 -31.09359 -29.60763 -27.84093 -26.46455 -25.89360 -24.55497 -23.67927 -23.03056 -22.32031 -21.13950 -20.31175 -18.40707 -17.42768 -16.84985 -16.57175 -16.50873 -16.30940 -15.76539 -15.43700 -15.12667 -14.78612 -14.66111 -14.42345 -14.26350 -14.05232 -13.68013 -13.59903 -13.56309 -13.19790 -13.10849 -12.53692 -12.35028 -12.19690 -11.99062 -11.87900 -11.79016 -11.69249 -11.60169 -11.46498 -11.30629 -11.22509 -11.08025 -10.94822 -10.86231 -10.64512 -10.54462 -10.17405 -9.81285 -9.62374 -9.14762 -8.87741 -8.70065 -8.45739 -8.25551 -7.65532 -6.06374 -4.11154 0.95623 1.19082 1.99298 3.28013 3.28374 3.36185 3.38089 3.42195 3.59156 3.69158 4.07481 4.42994 4.64199 4.70992 4.76129 4.80844 4.88218 4.91513 5.07925 5.08960 5.16537 5.19247 5.24699 5.28448 5.32407 5.36076 5.48777 5.53328 5.58608 5.64763 5.69567 5.76014 5.79479 5.87105 5.89863 5.96665 6.09017 6.10068 6.10773 6.23480 6.38952 6.65041 6.81485 6.91395 7.07301 7.10430 7.42262 7.52354 7.90150 8.21127 8.39739 8.88708 9.09938 9.54376 11.01662 Molecular weight = 366.15amu Principal moments of inertia in cm(-1) A = 0.006355 B = 0.003966 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4404.847113 B = 7058.132372 C =10738.577809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 H 0.059 0.941 4 C 0.509 3.491 5 O -0.521 6.521 6 N -0.603 5.603 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.512 5.512 18 C 0.013 3.987 19 C 0.067 3.933 20 O -0.380 6.380 21 C 0.139 3.861 22 H 0.082 0.918 23 C -0.074 4.074 24 C -0.088 4.088 25 C -0.110 4.110 26 C -0.032 4.032 27 Cl -0.076 7.076 28 C -0.115 4.115 29 C -0.080 4.080 30 C 0.030 3.970 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.102 0.898 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 5.909 -19.653 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.077 0.923 4 C 0.294 3.706 5 O -0.396 6.396 6 N -0.336 5.336 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.238 5.238 18 C -0.115 4.115 19 C -0.010 4.010 20 O -0.299 6.299 21 C 0.082 3.918 22 H 0.100 0.900 23 C -0.075 4.075 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.059 4.059 27 Cl -0.047 7.047 28 C -0.134 4.134 29 C -0.098 4.098 30 C -0.098 4.098 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.120 0.880 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.946 4.766 -19.609 20.274 hybrid contribution 1.302 1.028 0.470 1.724 sum -0.644 5.794 -19.139 20.008 Atomic orbital electron populations 1.21806 0.92306 1.03553 1.02190 1.21725 0.97023 0.95977 0.90181 0.92315 1.19992 0.79181 0.87527 0.83873 1.90667 1.49006 1.15808 1.84157 1.48183 1.63898 1.10032 1.11500 1.21695 0.99605 0.83139 1.01843 1.19283 0.94169 0.93629 0.80180 1.21437 0.91915 1.34605 1.08413 0.92570 1.24913 0.98596 0.94951 0.95487 1.69938 1.35676 1.35441 1.12230 0.86497 0.85428 0.78001 0.77865 1.19780 1.20927 1.20789 1.61884 1.05917 1.55234 1.00763 1.22914 1.00827 0.97189 0.90595 1.22648 0.80695 1.00374 0.97282 1.87952 1.19001 1.83691 1.39269 1.20858 0.88208 0.98172 0.84591 0.90032 1.19646 0.93931 0.94692 0.99224 1.21022 0.92488 0.98841 0.98280 1.21024 0.95245 0.97073 0.99521 1.20968 0.84482 0.96995 1.03406 1.98365 1.11765 1.98044 1.96543 1.21032 0.93194 0.98263 1.00924 1.20936 0.93809 0.97614 0.97478 1.22796 0.87868 0.99197 0.99910 0.91425 0.91778 0.90976 0.93672 0.90731 0.92659 0.95057 0.93815 0.92758 0.88993 0.94102 0.92014 0.88353 0.84464 0.84647 0.84968 0.84810 0.88002 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.66 37.16 0.32 -1.35 16 2 C 0.06 0.93 1.79 -68.87 -0.12 0.81 16 3 H 0.06 0.81 6.08 -51.93 -0.32 0.50 16 4 C 0.51 10.36 5.95 -10.99 -0.07 10.29 16 5 O -0.52 -12.85 15.22 5.56 0.08 -12.77 16 6 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 7 C 0.08 1.26 9.86 59.85 0.59 1.85 16 8 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 9 C -0.52 -14.74 9.39 -34.44 -0.32 -15.06 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 N -0.51 -7.40 4.27 -227.72 -0.97 -8.38 16 18 C 0.01 0.14 5.14 -3.71 -0.02 0.12 16 19 C 0.07 0.67 7.01 37.21 0.26 0.93 16 20 O -0.38 -4.71 9.80 -35.23 -0.35 -5.05 16 21 C 0.14 1.88 3.01 -27.83 -0.08 1.79 16 22 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 23 C -0.07 -0.97 4.98 -104.62 -0.52 -1.49 16 24 C -0.09 -1.12 9.67 -39.59 -0.38 -1.50 16 25 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 26 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 27 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 28 C -0.12 -1.32 9.83 -39.55 -0.39 -1.71 16 29 C -0.08 -0.96 9.35 -39.59 -0.37 -1.33 16 30 C 0.03 0.46 4.61 -3.71 -0.02 0.44 16 31 H 0.07 0.76 7.57 -51.93 -0.39 0.36 16 32 H 0.06 0.58 6.27 -51.92 -0.33 0.25 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.05 0.72 5.86 -51.93 -0.30 0.41 16 37 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.09 0.82 6.06 -51.93 -0.31 0.51 16 41 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.14 1.61 8.04 -52.48 -0.42 1.19 16 45 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.13 1.47 7.78 -52.49 -0.41 1.06 16 48 H 0.10 1.94 6.54 -51.93 -0.34 1.60 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -33.22 407.95 -10.66 -43.88 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.38 Total: 1.00 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.88 Total: -0.55 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.76 Total: -47.15 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.26 Total: -17.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.22 -10.66 -43.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249712292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.058 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds