Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86791 * 119.99828 * 2 1 4 4 H 1.48505 * 109.47422 * 270.00067 * 3 2 1 5 5 H 1.48500 * 109.47242 * 30.00647 * 3 2 1 6 6 H 1.48501 * 109.47158 * 150.00426 * 3 2 1 7 7 C 1.40044 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00078 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00183 * 353.48459 * 9 7 2 11 11 N 1.34779 * 119.99955 * 173.21443 * 9 7 2 12 12 C 1.46500 * 120.00048 * 5.48326 * 11 9 7 13 13 C 1.50696 * 109.46823 * 90.00245 * 12 11 9 14 14 C 1.38258 * 119.99717 * 269.72496 * 13 12 11 15 15 C 1.38221 * 120.02230 * 179.72642 * 14 13 12 16 16 C 1.38241 * 120.01004 * 0.55159 * 15 14 13 17 17 C 1.38308 * 119.98781 * 359.72511 * 16 15 14 18 18 Br 1.89100 * 120.01174 * 180.02562 * 17 16 15 19 19 C 1.38203 * 119.99255 * 90.00366 * 13 12 11 20 20 C 1.46505 * 120.00046 * 185.49073 * 11 9 7 21 21 C 1.53180 * 109.54333 * 57.78347 * 20 11 9 22 22 C 1.53093 * 109.15953 * 183.15613 * 21 20 11 23 23 O 1.42894 * 109.41949 * 57.60733 * 22 21 20 24 24 C 1.42903 * 114.09914 * 298.84533 * 23 22 21 25 25 C 1.53091 * 109.41821 * 61.15683 * 24 23 22 26 26 H 0.97002 * 120.00159 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47362 * 210.00464 * 12 11 9 28 28 H 1.08995 * 109.47397 * 330.00436 * 12 11 9 29 29 H 1.07998 * 119.99244 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.99962 * 180.27383 * 15 14 13 31 31 H 1.08000 * 120.00764 * 179.75109 * 16 15 14 32 32 H 1.07995 * 120.00922 * 359.97411 * 19 13 12 33 33 H 1.08998 * 109.54462 * 178.05620 * 20 11 9 34 34 H 1.08995 * 109.52302 * 303.05854 * 21 20 11 35 35 H 1.09001 * 109.52070 * 63.24977 * 21 20 11 36 36 H 1.09001 * 109.47850 * 297.62525 * 22 21 20 37 37 H 1.08997 * 109.47792 * 177.59732 * 22 21 20 38 38 H 1.08994 * 109.48059 * 301.16911 * 24 23 22 39 39 H 1.09003 * 109.48763 * 181.14353 * 24 23 22 40 40 H 1.08996 * 109.52283 * 182.48889 * 25 24 23 41 41 H 1.09001 * 109.52321 * 62.29139 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7002 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0642 -2.4839 0.1195 11 7 1.9418 -3.6436 -0.1390 12 6 3.4065 -3.6492 -0.1687 13 6 3.9367 -3.8032 1.2334 14 6 4.1925 -2.6832 2.0026 15 6 4.6735 -2.8239 3.2908 16 6 4.9099 -4.0845 3.8066 17 6 4.6595 -5.2051 3.0356 18 35 4.9819 -6.9298 3.7408 19 6 4.1727 -5.0639 1.7483 20 6 1.2018 -4.9022 -0.2599 21 6 0.2550 -4.8266 -1.4616 22 6 -0.5700 -6.1142 -1.5331 23 8 -1.2864 -6.2881 -0.3090 24 6 -0.4508 -6.4125 0.8435 25 6 0.3789 -5.1368 1.0107 26 1 -0.4850 0.8401 0.0004 27 1 3.7543 -4.4804 -0.7821 28 1 3.7650 -2.7108 -0.5917 29 1 4.0119 -1.6980 1.5986 30 1 4.8690 -1.9489 3.8928 31 1 5.2895 -4.1944 4.8117 32 1 3.9768 -5.9386 1.1460 33 1 1.9028 -5.7255 -0.3974 34 1 -0.4123 -3.9725 -1.3464 35 1 0.8363 -4.7150 -2.3769 36 1 0.0950 -6.9637 -1.6889 37 1 -1.2756 -6.0483 -2.3612 38 1 0.2157 -7.2658 0.7189 39 1 -1.0706 -6.5614 1.7277 40 1 1.0488 -5.2471 1.8634 41 1 -0.2859 -4.2889 1.1757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252482781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -54.215180 kcal Electronic energy + Delta-G solvation = -25969.012738 eV Core-core repulsion = 22280.999307 eV Total energy + Delta-G solvation = -3688.013432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.057 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62201 -38.81159 -37.21730 -34.41172 -33.00800 -32.27064 -31.81217 -30.60750 -30.33329 -28.98466 -26.53114 -25.62177 -23.63588 -23.01599 -22.27016 -21.18495 -20.30502 -18.87358 -16.75602 -16.42987 -15.95653 -15.61554 -15.46842 -15.08012 -14.89186 -14.62811 -14.33437 -13.82276 -13.72618 -13.24948 -13.07402 -12.97915 -12.89407 -12.32396 -12.07641 -11.74585 -11.52882 -11.37738 -11.19602 -11.05051 -10.97665 -10.96213 -10.69922 -10.58615 -10.33940 -10.24999 -10.18711 -10.17176 -9.71521 -9.24173 -8.91748 -8.68770 -8.44176 -7.51255 -7.33024 -6.26043 -4.72657 1.35579 1.48839 1.71319 3.06281 3.13945 3.15966 3.77885 4.02006 4.26653 4.47810 4.52734 4.94876 5.02490 5.28149 5.29817 5.36263 5.50224 5.53011 5.58551 5.59621 5.63747 5.70069 5.78499 5.83015 5.95512 6.04031 6.05892 6.07853 6.14257 6.26520 6.37169 6.53422 6.54439 6.62671 6.86723 7.04274 7.05512 7.09635 7.35734 7.54136 7.60350 8.05329 8.24572 8.93902 9.34223 10.50265 10.69017 Molecular weight = 367.06amu Principal moments of inertia in cm(-1) A = 0.008708 B = 0.004499 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.779349 B = 6221.645874 C = 8849.376932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.090 3.910 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.562 3.438 10 O -0.562 6.562 11 N -0.633 5.633 12 C 0.162 3.838 13 C -0.082 4.082 14 C -0.077 4.077 15 C -0.118 4.118 16 C -0.100 4.100 17 C -0.095 4.095 18 Br -0.070 7.070 19 C -0.084 4.084 20 C 0.168 3.832 21 C -0.171 4.171 22 C 0.069 3.931 23 O -0.384 6.384 24 C 0.068 3.932 25 C -0.170 4.170 26 H 0.269 0.731 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.665 -11.054 3.940 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.089 0.911 9 C 0.369 3.631 10 O -0.444 6.444 11 N -0.369 5.369 12 C 0.037 3.963 13 C -0.085 4.085 14 C -0.096 4.096 15 C -0.137 4.137 16 C -0.120 4.120 17 C -0.174 4.174 18 Br 0.015 6.985 19 C -0.104 4.104 20 C 0.064 3.936 21 C -0.210 4.210 22 C -0.009 4.009 23 O -0.303 6.303 24 C -0.009 4.009 25 C -0.209 4.209 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.715 -11.587 4.258 15.709 hybrid contribution 0.867 1.166 -0.002 1.453 sum 10.583 -10.421 4.256 15.450 Atomic orbital electron populations 1.69990 1.06965 1.27331 1.34907 1.25676 0.94555 1.00086 0.92679 0.86507 0.80248 0.81954 0.78915 1.19742 1.20468 1.18864 1.20976 0.93416 0.89276 1.54406 0.91071 1.18159 0.86940 0.81892 0.76149 1.90560 1.14356 1.85709 1.53782 1.48215 1.03317 1.06370 1.79025 1.20214 0.82866 1.02859 0.90339 1.20653 0.96839 0.92085 0.98878 1.21609 0.94321 1.00148 0.93500 1.21185 0.99893 0.96576 0.96086 1.20997 1.00217 0.91528 0.99286 1.21632 1.08289 0.90389 0.97072 1.96635 1.95289 1.20580 1.85950 1.20941 0.98223 0.97787 0.93497 1.20544 0.92281 0.86913 0.93904 1.22648 0.99990 1.00184 0.98148 1.22504 0.95436 0.96062 0.86864 1.87886 1.33745 1.93480 1.15160 1.22514 0.93605 0.96310 0.88493 1.22667 1.00247 0.99833 0.98103 0.92052 0.91979 0.88678 0.83914 0.85488 0.85760 0.85833 0.92471 0.87790 0.91980 0.94282 0.89490 0.94290 0.89581 0.92206 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.53 11.85 55.55 0.66 -20.87 16 2 C 0.09 2.33 5.50 -17.37 -0.10 2.23 16 3 Si 0.90 18.79 29.56 -169.99 -5.02 13.76 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.54 -13.70 8.09 -35.63 -0.29 -13.99 16 8 H 0.07 1.61 4.40 -52.48 -0.23 1.37 16 9 C 0.56 14.36 6.99 -12.99 -0.09 14.26 16 10 O -0.56 -16.45 11.22 5.20 0.06 -16.39 16 11 N -0.63 -12.93 2.41 -168.91 -0.41 -13.34 16 12 C 0.16 2.72 5.33 -5.20 -0.03 2.70 16 13 C -0.08 -1.31 5.46 -104.63 -0.57 -1.88 16 14 C -0.08 -1.25 9.47 -39.58 -0.37 -1.62 16 15 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 16 C -0.10 -1.34 9.79 -39.55 -0.39 -1.73 16 17 C -0.09 -1.32 6.22 -39.51 -0.25 -1.56 16 18 Br -0.07 -0.85 33.70 -68.01 -2.29 -3.14 16 19 C -0.08 -1.23 9.44 -39.55 -0.37 -1.60 16 20 C 0.17 3.10 2.64 -67.74 -0.18 2.92 16 21 C -0.17 -3.19 5.36 -26.59 -0.14 -3.33 16 22 C 0.07 1.09 6.84 37.21 0.25 1.34 16 23 O -0.38 -6.92 10.77 -35.23 -0.38 -7.30 16 24 C 0.07 1.10 6.84 37.20 0.25 1.36 16 25 C -0.17 -3.23 5.41 -26.59 -0.14 -3.37 16 26 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 27 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.10 1.65 5.91 -51.93 -0.31 1.34 16 29 H 0.14 2.47 5.97 -52.49 -0.31 2.16 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 34 H 0.10 2.44 6.12 -51.93 -0.32 2.12 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 2.46 6.06 -51.93 -0.31 2.15 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -30.37 349.67 -10.16 -40.53 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.23 Total: 7.80 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -2.81 Total: -6.33 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.25 Total: -34.21 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.32 Total: -23.69 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.29 Total: -3.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.37 -10.16 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252482781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.689 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds