Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86806 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46798 * 299.99456 * 3 2 1 6 6 H 1.48491 * 109.47158 * 59.99258 * 3 2 1 7 7 C 1.40123 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.46171 * 119.99931 * 0.02562 * 7 2 1 10 10 O 1.21742 * 120.00025 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99881 * 179.97438 * 9 7 2 12 12 C 1.39530 * 119.99980 * 185.27456 * 11 9 7 13 13 C 1.39057 * 120.08324 * 33.38274 * 12 11 9 14 14 C 1.38032 * 119.91529 * 180.02562 * 13 12 11 15 15 C 1.38355 * 120.08802 * 0.02562 * 14 13 12 16 16 C 1.38311 * 120.16100 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.95159 * 180.02562 * 16 15 14 18 18 N 1.46903 * 109.47080 * 90.00435 * 17 16 15 19 19 C 1.46960 * 110.99949 * 293.79612 * 18 17 16 20 20 C 1.53047 * 109.36827 * 176.81373 * 19 18 17 21 21 N 1.46962 * 109.36487 * 58.39609 * 20 19 18 22 22 C 1.39001 * 111.00048 * 176.81354 * 21 20 19 23 23 C 1.39143 * 119.70468 * 303.80391 * 22 21 20 24 24 C 1.38301 * 119.09492 * 179.97438 * 23 22 21 25 25 C 1.38883 * 118.50448 * 359.97438 * 24 23 22 26 26 C 1.38024 * 119.33220 * 0.02562 * 25 24 23 27 27 N 1.31977 * 120.85322 * 359.72792 * 26 25 24 28 28 C 1.46960 * 110.88243 * 300.68570 * 21 20 19 29 29 C 1.46951 * 111.00037 * 169.99728 * 18 17 16 30 30 C 1.38076 * 120.08624 * 0.29828 * 16 15 14 31 31 H 0.96998 * 119.99843 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99923 * 5.27468 * 11 9 7 33 33 H 1.07999 * 120.04000 * 0.02562 * 13 12 11 34 34 H 1.08009 * 119.95798 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.92034 * 180.02562 * 15 14 13 36 36 H 1.09003 * 109.46736 * 209.99483 * 17 16 15 37 37 H 1.09000 * 109.47606 * 330.00160 * 17 16 15 38 38 H 1.09000 * 109.48477 * 296.78395 * 19 18 17 39 39 H 1.09002 * 109.49015 * 56.84134 * 19 18 17 40 40 H 1.09003 * 109.48579 * 298.43385 * 20 19 18 41 41 H 1.08995 * 109.49096 * 178.36687 * 20 19 18 42 42 H 1.07998 * 120.44791 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.74613 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.33227 * 180.02562 * 25 24 23 45 45 H 1.07995 * 119.57112 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.48305 * 299.35091 * 28 21 20 47 47 H 1.08995 * 109.50399 * 179.29783 * 28 21 20 48 48 H 1.08996 * 109.49333 * 303.15235 * 29 18 17 49 49 H 1.09003 * 109.48938 * 63.21988 * 29 18 17 50 50 H 1.08004 * 120.04247 * 179.70864 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8817 2.3964 -1.2126 6 1 1.8815 2.3965 1.2123 7 6 2.0070 -1.2135 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2762 -2.4794 0.0005 10 8 0.0588 -2.4794 0.0005 11 7 1.9501 -3.6466 0.0005 12 6 1.2570 -4.8524 -0.1105 13 6 0.0951 -4.9209 -0.8715 14 6 -0.5882 -6.1155 -0.9786 15 6 -0.1188 -7.2437 -0.3296 16 6 1.0365 -7.1793 0.4281 17 6 1.5439 -8.4112 1.1326 18 7 2.4594 -9.1407 0.2450 19 6 1.7453 -9.6781 -0.9215 20 6 2.7449 -10.3604 -1.8584 21 7 3.4414 -11.4310 -1.1317 22 6 4.3077 -12.1213 -1.9715 23 6 3.8192 -12.7068 -3.1354 24 6 4.6923 -13.3901 -3.9621 25 6 6.0300 -13.4650 -3.5962 26 6 6.4460 -12.8606 -2.4271 27 7 5.5912 -12.2109 -1.6597 28 6 4.1555 -10.8936 0.0349 29 6 3.1559 -10.2113 0.9718 30 6 1.7224 -5.9866 0.5446 31 1 -0.4850 0.8400 -0.0004 32 1 2.9171 -3.6483 0.0778 33 1 -0.2722 -4.0407 -1.3780 34 1 -1.4909 -6.1694 -1.5691 35 1 -0.6553 -8.1770 -0.4156 36 1 2.0731 -8.1190 2.0396 37 1 0.7025 -9.0531 1.3936 38 1 1.0030 -10.4044 -0.5906 39 1 1.2482 -8.8647 -1.4501 40 1 3.4712 -9.6280 -2.2109 41 1 2.2136 -10.7850 -2.7101 42 1 2.7725 -12.6286 -3.3897 43 1 4.3419 -13.8543 -4.8721 44 1 6.7375 -13.9909 -4.2201 45 1 7.4852 -12.9169 -2.1387 46 1 4.8979 -10.1673 -0.2961 47 1 4.6529 -11.7067 0.5636 48 1 3.6872 -9.7867 1.8235 49 1 2.4296 -10.9437 1.3242 50 1 2.6218 -5.9361 1.1403 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252508364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = 52.359576 kcal Electronic energy + Delta-G solvation = -31595.732034 eV Core-core repulsion = 27395.045073 eV Total energy + Delta-G solvation = -4200.686960 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01292 -39.55807 -38.75457 -37.13821 -35.64191 -33.45165 -32.86899 -32.44661 -31.69348 -31.09158 -30.13337 -28.98466 -27.22451 -26.21436 -24.67849 -24.38414 -22.92144 -22.48309 -21.94076 -21.29205 -20.05121 -19.28115 -18.02872 -17.52899 -16.76770 -16.29265 -16.23730 -15.67515 -15.57774 -15.40614 -15.25880 -15.10771 -14.72584 -14.58789 -14.36570 -14.15736 -13.90811 -13.56346 -13.39242 -13.33420 -12.77941 -12.66009 -12.53357 -12.28984 -12.12030 -11.88150 -11.76951 -11.48220 -11.38689 -11.30412 -11.15918 -11.09736 -10.91341 -10.63721 -10.46928 -10.31985 -10.30421 -10.08572 -9.76523 -9.28934 -8.89304 -8.50546 -8.38999 -8.21637 -7.73784 -7.03877 -6.35042 -4.81925 0.81751 0.97246 1.94431 2.03026 3.05674 3.14192 3.14350 3.18665 3.56270 3.77640 3.99090 4.12421 4.31044 4.51862 4.56721 4.59659 4.63110 4.74638 4.80109 4.83033 4.90683 4.97411 5.06151 5.12774 5.23768 5.26403 5.32071 5.38854 5.53006 5.61758 5.62386 5.64557 5.66358 5.68531 5.69610 5.77728 5.85611 5.89067 6.02596 6.16227 6.21576 6.38705 6.42215 6.55436 6.79872 6.89978 6.96085 7.03735 7.14240 7.17059 7.28387 7.45826 7.69888 7.75843 8.08209 8.20629 8.85199 9.23329 10.39019 10.56904 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.001714 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.566453 B =16330.326223 C =17012.966099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.543 3.457 10 O -0.560 6.560 11 N -0.701 5.701 12 C 0.193 3.807 13 C -0.127 4.127 14 C -0.102 4.102 15 C -0.162 4.162 16 C -0.065 4.065 17 C 0.102 3.898 18 N -0.533 5.533 19 C 0.054 3.946 20 C 0.064 3.936 21 N -0.480 5.480 22 C 0.316 3.684 23 C -0.188 4.188 24 C -0.054 4.054 25 C -0.206 4.206 26 C 0.126 3.874 27 N -0.521 5.521 28 C 0.072 3.928 29 C 0.053 3.947 30 C -0.153 4.153 31 H 0.271 0.729 32 H 0.393 0.607 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.155 0.845 46 H 0.060 0.940 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.797 -26.031 -4.747 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.350 3.650 10 O -0.442 6.442 11 N -0.344 5.344 12 C 0.094 3.906 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.182 4.182 16 C -0.067 4.067 17 C -0.025 4.025 18 N -0.258 5.258 19 C -0.075 4.075 20 C -0.062 4.062 21 N -0.198 5.198 22 C 0.084 3.916 23 C -0.211 4.211 24 C -0.080 4.080 25 C -0.228 4.228 26 C -0.032 4.032 27 N -0.235 5.235 28 C -0.055 4.055 29 C -0.076 4.076 30 C -0.175 4.175 31 H 0.082 0.918 32 H 0.226 0.774 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.172 0.828 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.006 -25.342 -3.928 26.865 hybrid contribution 0.542 0.239 -0.632 0.866 sum 8.548 -25.103 -4.560 26.908 Atomic orbital electron populations 1.69995 1.07155 1.27659 1.33966 1.25747 0.94697 1.00527 0.92514 0.86238 0.80492 0.81281 0.78366 1.18624 1.19994 1.20007 1.20904 0.93856 0.89038 1.53650 0.90961 1.18383 0.87473 0.82136 0.77044 1.90638 1.13691 1.86123 1.53732 1.44154 1.09649 1.04416 1.76169 1.17965 0.93453 0.86443 0.92719 1.21345 0.96182 0.98181 0.99113 1.20900 0.99176 0.92530 0.99484 1.20701 0.97672 0.98041 1.01796 1.19199 0.95125 0.93572 0.98761 1.20959 0.94265 0.92581 0.94666 1.62160 1.29835 1.25277 1.08500 1.22274 0.94621 0.98334 0.92229 1.22364 0.96923 0.90862 0.96085 1.59340 1.26346 1.26240 1.07838 1.19895 0.87821 0.94077 0.89775 1.21582 1.01388 1.02394 0.95689 1.21452 0.93149 0.94968 0.98457 1.21994 0.96905 1.04371 0.99487 1.22544 0.98821 0.91517 0.90299 1.67641 1.02137 1.19490 1.34231 1.22042 0.94823 0.98687 0.89944 1.22262 0.96620 0.92404 0.96272 1.20676 1.01978 0.92467 1.02412 0.91805 0.77395 0.84629 0.86811 0.87496 0.90035 0.94063 0.93941 0.88477 0.92515 0.89578 0.84681 0.84775 0.84965 0.82794 0.92143 0.89430 0.89681 0.94101 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.03 11.82 55.55 0.66 -21.37 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.23 16 3 Si 0.91 19.52 29.56 -169.99 -5.02 14.49 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -14.71 9.54 -35.69 -0.34 -15.05 16 8 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 9 C 0.54 15.06 7.47 -13.08 -0.10 14.96 16 10 O -0.56 -17.44 12.70 5.15 0.07 -17.37 16 11 N -0.70 -15.85 5.32 -11.19 -0.06 -15.91 16 12 C 0.19 4.04 6.28 -83.77 -0.53 3.51 16 13 C -0.13 -2.69 8.65 -39.35 -0.34 -3.03 16 14 C -0.10 -1.76 10.04 -39.61 -0.40 -2.16 16 15 C -0.16 -2.43 7.92 -39.51 -0.31 -2.75 16 16 C -0.07 -0.99 4.89 -104.65 -0.51 -1.50 16 17 C 0.10 1.23 5.12 -4.97 -0.03 1.20 16 18 N -0.53 -6.08 4.70 -235.91 -1.11 -7.19 16 19 C 0.05 0.57 5.25 -3.77 -0.02 0.55 16 20 C 0.06 0.63 5.37 -3.77 -0.02 0.61 16 21 N -0.48 -4.99 4.73 -173.04 -0.82 -5.81 16 22 C 0.32 3.31 6.40 -155.03 -0.99 2.32 16 23 C -0.19 -1.60 9.22 -39.22 -0.36 -1.96 16 24 C -0.05 -0.38 10.17 -39.32 -0.40 -0.77 16 25 C -0.21 -1.40 10.10 -39.42 -0.40 -1.80 16 26 C 0.13 1.03 11.17 -17.57 -0.20 0.84 16 27 N -0.52 -5.59 8.71 -12.44 -0.11 -5.70 16 28 C 0.07 0.75 4.79 -3.76 -0.02 0.73 16 29 C 0.05 0.52 5.61 -3.77 -0.02 0.50 16 30 C -0.15 -2.67 9.62 -39.36 -0.38 -3.05 16 31 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 32 H 0.39 7.68 8.80 -40.82 -0.36 7.33 16 33 H 0.14 3.31 6.42 -52.49 -0.34 2.97 16 34 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.11 1.33 7.99 -52.49 -0.42 0.91 16 36 H 0.08 0.93 7.97 -51.93 -0.41 0.52 16 37 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 1.12 5.95 -51.93 -0.31 0.81 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.70 6.79 -51.93 -0.35 0.35 16 42 H 0.14 0.95 7.17 -52.49 -0.38 0.58 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 45 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 47 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 48 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 49 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -33.81 405.89 -12.89 -46.70 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.16 Total: 10.66 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -5.45 Total: -4.63 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -1.44 Total: -55.97 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.07 Total: -17.37 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.81 -12.89 -46.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252508364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.062 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds