Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35354 * 126.37480 * 2 1 4 4 C 1.41549 * 105.50345 * 180.16202 * 3 2 1 5 5 C 1.47599 * 126.52885 * 179.87909 * 4 3 2 6 6 O 1.21555 * 119.99402 * 359.71253 * 5 4 3 7 7 N 1.34768 * 120.00345 * 179.71294 * 5 4 3 8 8 N 1.40097 * 120.00209 * 179.97438 * 7 5 4 9 9 C 1.31117 * 120.00229 * 180.02562 * 8 7 5 10 10 C 1.48147 * 127.52279 * 180.02562 * 9 8 7 11 11 C 1.39050 * 133.20820 * 359.96983 * 10 9 8 12 12 C 1.38050 * 119.73171 * 180.02562 * 11 10 9 13 13 C 1.38479 * 120.07045 * 0.02562 * 12 11 10 14 14 C 1.38021 * 120.62033 * 359.97438 * 13 12 11 15 15 C 1.39069 * 120.13260 * 359.71334 * 14 13 12 16 16 N 1.39048 * 131.63148 * 179.58531 * 15 14 13 17 17 C 1.46506 * 124.27744 * 0.74717 * 16 15 14 18 18 C 1.52999 * 109.46967 * 269.72785 * 17 16 15 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00047 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99827 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00426 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48511 * 109.47086 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47050 * 119.99632 * 23 21 19 26 26 H 1.48494 * 109.47346 * 239.99996 * 23 21 19 27 27 C 1.34391 * 111.44719 * 180.47796 * 16 15 14 28 28 O 1.21689 * 126.05716 * 180.28750 * 27 16 15 29 29 N 1.31867 * 106.94879 * 359.61908 * 4 3 2 30 30 N 1.28473 * 110.06193 * 0.23755 * 29 4 3 31 31 H 0.97001 * 124.87664 * 179.97438 * 30 29 4 32 32 H 1.09001 * 109.47671 * 270.27784 * 1 2 3 33 33 H 1.08996 * 109.47556 * 30.28383 * 1 2 3 34 34 H 1.09003 * 109.46940 * 150.28010 * 1 2 3 35 35 H 1.07996 * 127.24912 * 0.02681 * 3 2 1 36 36 H 0.97002 * 119.99928 * 359.97438 * 7 5 4 37 37 H 1.07994 * 120.13177 * 0.03506 * 11 10 9 38 38 H 1.07995 * 119.96575 * 180.02562 * 12 11 10 39 39 H 1.07998 * 119.68955 * 179.97438 * 13 12 11 40 40 H 1.08004 * 119.93027 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.46947 * 29.72204 * 17 16 15 42 42 H 1.08997 * 109.47271 * 149.72720 * 17 16 15 43 43 H 1.09011 * 109.46854 * 299.99834 * 18 17 16 44 44 H 1.09005 * 109.47366 * 59.99260 * 18 17 16 45 45 H 0.97003 * 120.00835 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5855 -0.0039 5 6 4.8757 1.3807 -0.0079 6 8 4.8205 2.5950 -0.0133 7 7 6.0723 0.7606 -0.0055 8 7 7.2525 1.5154 -0.0098 9 6 8.4166 0.9121 -0.0080 10 6 9.7584 1.5401 -0.0113 11 6 10.1910 2.8616 -0.0176 12 6 11.5433 3.1393 -0.0199 13 6 12.4640 2.1050 -0.0165 14 6 12.0443 0.7901 -0.0103 15 6 10.6862 0.4909 -0.0013 16 7 10.0078 -0.7228 -0.0014 17 6 10.6618 -2.0338 0.0039 18 6 10.8890 -2.4962 -1.4367 19 6 11.5612 -3.8449 -1.4313 20 1 11.8027 -4.3241 -0.4941 21 6 11.8679 -4.4670 -2.6229 22 7 11.5734 -3.8838 -3.7642 23 14 12.7018 -6.1385 -2.6163 24 1 12.9235 -6.5756 -1.2144 25 1 11.8371 -7.1259 -3.3112 26 1 14.0071 -6.0433 -3.3179 27 6 8.6762 -0.5414 -0.0010 28 8 7.8337 -1.4195 0.0039 29 7 3.5421 -0.7301 0.0025 30 7 2.3080 -1.0872 0.0049 31 1 1.9964 -2.0058 0.0091 32 1 -0.3634 0.0050 1.0276 33 1 -0.3634 0.8874 -0.5182 34 1 -0.3633 -0.8925 -0.5095 35 1 2.0052 2.1260 0.0004 36 1 6.1163 -0.2084 -0.0007 37 1 9.4720 3.6674 -0.0205 38 1 11.8835 4.1642 -0.0243 39 1 13.5205 2.3292 -0.0187 40 1 12.7721 -0.0079 -0.0073 41 1 11.6206 -1.9593 0.5169 42 1 10.0279 -2.7540 0.5210 43 1 9.9301 -2.5706 -1.9499 44 1 11.5228 -1.7758 -1.9540 45 1 11.7895 -4.3212 -4.6026 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252606568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = 87.340133 kcal Electronic energy + Delta-G solvation = -31371.819939 eV Core-core repulsion = 26971.390844 eV Total energy + Delta-G solvation = -4400.429095 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.03067 -41.53302 -39.50468 -38.33993 -36.44903 -35.80638 -33.87411 -33.28262 -32.67664 -32.15051 -30.72753 -30.31751 -28.75572 -27.46032 -26.47240 -24.92861 -23.77285 -22.44020 -21.73420 -21.61538 -21.01353 -20.38831 -19.82290 -18.16878 -17.86943 -17.26270 -16.82713 -16.41126 -16.27480 -15.80594 -15.68771 -15.33287 -14.88818 -14.67304 -14.49152 -14.21668 -14.18355 -13.96460 -13.63658 -13.48076 -13.43446 -12.95127 -12.88166 -12.74166 -12.65593 -12.27790 -12.21184 -11.85841 -11.64316 -11.19605 -11.10122 -11.04843 -10.88453 -10.51222 -10.41803 -10.19446 -9.82958 -9.75931 -9.66242 -9.51536 -9.31936 -9.27926 -8.48560 -8.46593 -7.72409 -6.11529 -4.16572 0.20548 1.26770 1.35632 1.70873 1.91993 2.04847 2.56101 2.88113 3.05259 3.24936 3.31734 3.32807 3.36231 3.84798 3.93583 3.99474 4.24833 4.36872 4.45070 4.62657 4.70363 4.99208 5.00361 5.05014 5.16271 5.20742 5.24746 5.28943 5.35833 5.50633 5.52728 5.57441 5.76983 5.91904 5.99555 6.10452 6.19086 6.34728 6.50279 6.53321 6.59064 6.66247 6.76174 6.84801 7.10390 7.18504 7.49699 7.54412 7.60112 7.81817 7.93846 8.07660 8.21423 8.89284 9.48405 10.99707 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.002606 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.254978 B =10743.258970 C =13971.396179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.013 3.987 3 C -0.171 4.171 4 C -0.013 4.013 5 C 0.626 3.374 6 O -0.492 6.492 7 N -0.563 5.563 8 N -0.135 5.135 9 C 0.084 3.916 10 C -0.111 4.111 11 C -0.035 4.035 12 C -0.155 4.155 13 C -0.065 4.065 14 C -0.135 4.135 15 C 0.182 3.818 16 N -0.530 5.530 17 C 0.111 3.889 18 C 0.011 3.989 19 C -0.525 4.525 20 H 0.060 0.940 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.896 3.104 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.535 3.465 28 O -0.494 6.494 29 N -0.245 5.245 30 N -0.374 5.374 31 H 0.447 0.553 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.167 0.833 36 H 0.417 0.583 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.022 0.978 44 H 0.024 0.976 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 12.073 9.496 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.174 4.174 5 C 0.412 3.588 6 O -0.361 6.361 7 N -0.310 5.310 8 N 0.053 4.947 9 C -0.106 4.106 10 C -0.117 4.117 11 C -0.055 4.055 12 C -0.174 4.174 13 C -0.085 4.085 14 C -0.156 4.156 15 C 0.082 3.918 16 N -0.249 5.249 17 C -0.008 4.008 18 C -0.027 4.027 19 C -0.564 4.564 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.320 3.680 28 O -0.366 6.366 29 N -0.082 5.082 30 N -0.089 5.089 31 H 0.293 0.707 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.184 0.816 36 H 0.261 0.739 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.761 12.089 9.312 21.231 hybrid contribution 0.146 -2.190 -0.278 2.212 sum -14.615 9.899 9.034 19.829 Atomic orbital electron populations 1.20372 0.86180 1.04213 1.03564 1.21514 0.95601 0.86954 1.07168 1.21496 0.89715 1.00025 1.08621 1.21540 0.94280 0.89902 1.11726 1.16632 0.79943 0.86508 0.75760 1.90805 1.86226 1.12518 1.46575 1.46902 1.02175 1.10933 1.71033 1.75229 0.91003 1.22195 1.06288 1.23379 0.92029 0.93198 1.01995 1.18263 0.87637 0.93881 1.11928 1.20610 0.96085 0.93802 0.95027 1.20975 0.92217 0.99503 1.04739 1.21035 1.00033 0.91404 0.96009 1.20415 0.92076 0.97793 1.05312 1.18373 0.93376 0.84123 0.95897 1.45884 1.05911 1.07207 1.65931 1.22273 0.96684 0.78805 1.02996 1.19442 0.97923 0.96668 0.88640 1.21028 1.39676 1.02927 0.92727 0.92203 1.25003 0.95701 0.97978 0.95495 1.69979 1.46961 1.38469 0.97369 0.86471 0.79152 0.83787 0.78210 1.19598 1.20924 1.20864 1.19024 0.83052 0.88561 0.77359 1.90807 1.48434 1.49241 1.48155 1.73723 1.01775 1.14726 1.18007 1.43373 1.02777 1.09876 1.52914 0.70746 0.90090 0.89297 0.90895 0.81558 0.73947 0.84838 0.85151 0.84953 0.84514 0.90141 0.89917 0.95941 0.95799 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 36.00 0.38 0.07 16 2 C 0.01 0.10 7.23 -82.21 -0.59 -0.49 16 3 C -0.17 -1.81 10.73 -39.35 -0.42 -2.23 16 4 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 5 C 0.63 10.31 7.94 -12.44 -0.10 10.21 16 6 O -0.49 -8.96 17.26 5.32 0.09 -8.87 16 7 N -0.56 -9.77 6.25 30.47 0.19 -9.57 16 8 N -0.14 -2.40 11.19 34.74 0.39 -2.02 16 9 C 0.08 1.48 7.56 -80.26 -0.61 0.88 16 10 C -0.11 -1.73 6.34 -104.84 -0.67 -2.40 16 11 C -0.03 -0.43 10.09 -39.35 -0.40 -0.83 16 12 C -0.16 -1.61 10.05 -39.56 -0.40 -2.01 16 13 C -0.07 -0.70 10.01 -39.57 -0.40 -1.10 16 14 C -0.14 -1.85 9.79 -39.35 -0.39 -2.24 16 15 C 0.18 2.98 6.73 -83.59 -0.56 2.42 16 16 N -0.53 -10.02 2.73 -114.49 -0.31 -10.33 16 17 C 0.11 2.26 5.72 -4.04 -0.02 2.24 16 18 C 0.01 0.28 5.30 -27.89 -0.15 0.13 16 19 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 23 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.53 10.50 7.94 -12.59 -0.10 10.40 16 28 O -0.49 -10.61 15.47 5.20 0.08 -10.53 16 29 N -0.25 -3.17 11.92 33.41 0.40 -2.77 16 30 N -0.37 -3.24 6.83 33.50 0.23 -3.01 16 31 H 0.45 2.24 8.96 -190.44 -1.71 0.53 16 32 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.42 7.36 6.00 -182.60 -1.09 6.27 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.80 7.80 -52.48 -0.41 1.39 16 41 H 0.08 1.44 7.74 -51.93 -0.40 1.04 16 42 H 0.08 1.70 7.96 -51.93 -0.41 1.29 16 43 H 0.02 0.64 8.14 -51.92 -0.42 0.22 16 44 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -35.96 400.80 -9.97 -45.94 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.37 Total: 3.44 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -5.42 Total: 1.25 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 1.63 Total: -53.40 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.17 Total: -19.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.96 -9.97 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252606568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.278 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds