Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65597 * 120.00096 * 2 1 4 4 O 1.42095 * 106.40345 * 309.16453 * 3 2 1 5 5 O 1.42101 * 106.40221 * 176.24046 * 3 2 1 6 6 C 1.76204 * 107.21566 * 62.70666 * 3 2 1 7 7 C 1.37958 * 119.70722 * 242.79188 * 6 3 2 8 8 C 1.38227 * 119.82573 * 180.02562 * 7 6 3 9 9 C 1.38000 * 119.71734 * 0.26322 * 8 7 6 10 10 C 1.38789 * 120.50260 * 359.93242 * 9 8 7 11 11 C 1.37717 * 119.85275 * 359.57738 * 10 9 8 12 12 C 1.50593 * 122.85633 * 181.45054 * 11 10 9 13 13 C 1.53270 * 110.82550 * 339.69210 * 12 11 10 14 14 N 1.47224 * 107.66699 * 47.64380 * 13 12 11 15 15 C 1.34782 * 121.33434 * 115.80671 * 14 13 12 16 16 O 1.21582 * 120.00066 * 4.75929 * 15 14 13 17 17 N 1.34780 * 120.00021 * 184.75475 * 15 14 13 18 18 C 1.46496 * 120.00060 * 175.14627 * 17 15 14 19 19 C 1.52997 * 109.47304 * 180.02562 * 18 17 15 20 20 C 1.50696 * 109.47337 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99770 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00194 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00084 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47237 * 60.00490 * 24 22 20 26 26 H 1.48506 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47302 * 299.99773 * 24 22 20 28 28 C 1.46682 * 117.33265 * 295.53482 * 14 13 12 29 29 H 1.08997 * 109.47176 * 64.97712 * 1 2 3 30 30 H 1.08995 * 109.47397 * 184.98209 * 1 2 3 31 31 H 1.08998 * 109.46872 * 304.97996 * 1 2 3 32 32 H 0.96998 * 119.99527 * 180.02562 * 2 1 3 33 33 H 1.08004 * 120.08864 * 0.05321 * 7 6 3 34 34 H 1.07991 * 120.13906 * 180.28986 * 8 7 6 35 35 H 1.08001 * 119.74638 * 179.90963 * 9 8 7 36 36 H 1.08998 * 109.20611 * 100.16379 * 12 11 10 37 37 H 1.09007 * 109.20039 * 219.49995 * 12 11 10 38 38 H 1.08996 * 109.88990 * 288.12159 * 13 12 11 39 39 H 1.09001 * 109.90520 * 167.17416 * 13 12 11 40 40 H 0.97004 * 119.99711 * 355.15303 * 17 15 14 41 41 H 1.09007 * 109.46748 * 60.00236 * 18 17 15 42 42 H 1.09003 * 109.47486 * 300.00395 * 18 17 15 43 43 H 1.09003 * 109.46927 * 300.00438 * 19 18 17 44 44 H 1.08997 * 109.47276 * 60.00184 * 19 18 17 45 45 H 0.96998 * 119.99923 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.43950 * 164.73842 * 28 14 13 47 47 H 1.09005 * 109.43789 * 284.61026 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7482 2.2121 -1.0569 5 8 3.6717 1.1015 0.0894 6 6 1.8854 2.2716 1.4957 7 6 1.2332 3.4862 1.4433 8 6 0.9127 4.1456 2.6151 9 6 1.2528 3.5861 3.8299 10 6 1.9126 2.3662 3.8836 11 6 2.2236 1.7031 2.7174 12 6 2.9092 0.3625 2.6977 13 6 3.6337 0.1014 4.0229 14 7 2.6982 0.4209 5.1140 15 6 2.2616 -0.5298 5.9637 16 8 2.7056 -1.6594 5.8924 17 7 1.3327 -0.2283 6.8926 18 6 0.7802 -1.2836 7.7455 19 6 -0.2465 -0.6786 8.7050 20 6 -0.8144 -1.7639 9.5828 21 1 -0.4770 -2.7834 9.4674 22 6 -1.7645 -1.4555 10.5331 23 7 -2.1749 -0.2140 10.6739 24 14 -2.4689 -2.8011 11.6206 25 1 -1.3735 -3.4317 12.4001 26 1 -3.4654 -2.2138 12.5520 27 1 -3.1284 -3.8274 10.7739 28 6 2.2653 1.8164 5.2430 29 1 -0.3633 0.4347 -0.9312 30 1 -0.3634 -1.0237 0.0892 31 1 -0.3633 0.5891 0.8420 32 1 1.9500 -0.8401 -0.0004 33 1 0.9732 3.9204 0.4892 34 1 0.3980 5.0943 2.5801 35 1 1.0040 4.1016 4.7457 36 1 2.1662 -0.4179 2.5334 37 1 3.6352 0.3430 1.8848 38 1 4.5155 0.7379 4.0951 39 1 3.9283 -0.9462 4.0847 40 1 1.0299 0.6874 6.9963 41 1 1.5843 -1.7464 8.3177 42 1 0.2962 -2.0370 7.1240 43 1 0.2371 0.0751 9.3266 44 1 -1.0505 -0.2160 8.1325 45 1 -2.8436 0.0029 11.3422 46 1 1.3913 1.8665 5.8924 47 1 3.0721 2.4080 5.6755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253416543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = -69.193528 kcal Electronic energy + Delta-G solvation = -31392.077289 eV Core-core repulsion = 27088.011585 eV Total energy + Delta-G solvation = -4304.065704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82653 -39.33393 -37.71534 -36.28280 -36.23093 -35.45752 -34.95548 -33.54633 -32.76056 -31.77539 -30.18145 -29.16888 -26.42715 -26.12183 -24.87556 -23.87631 -23.44243 -21.53721 -20.92729 -19.89877 -19.31083 -18.32330 -17.95628 -17.70415 -16.74819 -16.50953 -16.28777 -16.07362 -15.78129 -15.41220 -15.00121 -14.79335 -14.55212 -14.40115 -14.13243 -14.05641 -13.94869 -13.46636 -13.36075 -13.24154 -12.84573 -12.81987 -12.66595 -12.47065 -12.43517 -12.30777 -12.13800 -11.99246 -11.82060 -11.23562 -11.17231 -11.05422 -10.96162 -10.68304 -10.37181 -10.05014 -10.02489 -9.67111 -9.58711 -9.32430 -9.06587 -8.86102 -8.51465 -8.30040 -6.13116 -4.15888 0.00780 0.42185 0.87517 2.56874 2.72141 3.01837 3.28642 3.32555 3.35875 3.36392 3.41954 3.97971 4.12576 4.21251 4.27629 4.40374 4.51627 4.54192 4.62593 4.85322 4.91121 4.96063 5.01090 5.06500 5.19863 5.24128 5.28294 5.32929 5.35136 5.36730 5.50113 5.59732 5.71280 5.74651 5.90244 6.00132 6.17594 6.33893 6.39752 6.41589 6.48232 6.71199 6.90738 7.06716 7.49814 7.57505 7.85531 8.17143 8.28606 8.83645 8.90803 9.49060 10.98522 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.002163 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.452387 B =12941.145641 C =13160.996759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.120 6.120 3 S 2.700 3.300 4 O -0.959 6.959 5 O -0.956 6.956 6 C -0.683 4.683 7 C -0.019 4.019 8 C -0.142 4.142 9 C -0.052 4.052 10 C -0.114 4.114 11 C 0.041 3.959 12 C -0.158 4.158 13 C 0.138 3.862 14 N -0.638 5.638 15 C 0.707 3.293 16 O -0.591 6.591 17 N -0.738 5.738 18 C 0.139 3.861 19 C 0.014 3.986 20 C -0.522 4.522 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.152 3.848 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.421 0.579 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.391 0.609 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.263 0.737 46 H 0.095 0.905 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 9.183 -21.917 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.880 5.880 3 S 2.789 3.211 4 O -0.949 6.949 5 O -0.946 6.946 6 C -0.770 4.770 7 C -0.038 4.038 8 C -0.161 4.161 9 C -0.071 4.071 10 C -0.116 4.116 11 C 0.040 3.960 12 C -0.196 4.196 13 C 0.015 3.985 14 N -0.376 5.376 15 C 0.409 3.591 16 O -0.469 6.469 17 N -0.393 5.393 18 C 0.016 3.984 19 C -0.023 4.023 20 C -0.560 4.560 21 H 0.078 0.922 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C 0.029 3.971 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.227 0.773 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.852 8.854 -22.471 25.397 hybrid contribution -0.965 -0.208 1.484 1.782 sum 6.887 8.646 -20.988 23.720 Atomic orbital electron populations 1.21502 0.78053 1.04531 1.02097 1.55257 1.16487 1.24217 1.92071 1.01747 0.73033 0.72653 0.73650 1.93567 1.79759 1.69640 1.51974 1.93557 1.30928 1.83251 1.86884 1.30717 1.17520 1.10359 1.18425 1.20927 0.91284 0.91726 0.99869 1.21208 1.01823 1.00919 0.92149 1.21439 0.93244 0.93545 0.98874 1.19953 1.00716 0.95885 0.95035 1.19076 0.91815 0.94259 0.90879 1.21860 1.01742 0.93715 1.02290 1.21396 0.90590 1.03763 0.82784 1.47242 1.50123 1.07317 1.32956 1.15871 0.79907 0.83888 0.79461 1.90886 1.61439 1.19972 1.74585 1.45704 1.42757 1.12950 1.37884 1.21627 0.96689 0.88606 0.91457 1.19311 0.92793 0.96963 0.93277 1.21002 1.22703 0.94446 1.17880 0.92250 1.24989 0.96403 0.95606 0.97244 1.69941 1.30965 1.17735 1.34730 0.86564 0.78847 0.81812 0.80264 1.20072 1.21248 1.20108 1.20409 1.00730 0.82762 0.93247 0.91432 0.89615 0.91938 0.74485 0.83870 0.84661 0.84645 0.88559 0.86112 0.90722 0.87589 0.77332 0.92562 0.92809 0.95995 0.96081 0.92782 0.88724 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 11.13 59.85 0.67 1.15 16 2 N -1.12 -7.54 5.46 -16.63 -0.09 -7.63 16 3 S 2.70 25.47 4.99 -107.50 -0.54 24.94 16 4 O -0.96 -11.17 16.75 -57.17 -0.96 -12.12 16 5 O -0.96 -11.01 15.41 -57.17 -0.88 -11.89 16 6 C -0.68 -6.57 5.76 -39.43 -0.23 -6.79 16 7 C -0.02 -0.16 9.53 -39.69 -0.38 -0.54 16 8 C -0.14 -1.10 10.05 -39.67 -0.40 -1.50 16 9 C -0.05 -0.43 9.62 -39.46 -0.38 -0.81 16 10 C -0.11 -1.13 5.82 -104.55 -0.61 -1.74 16 11 C 0.04 0.43 5.76 -104.61 -0.60 -0.18 16 12 C -0.16 -1.59 4.82 -27.80 -0.13 -1.72 16 13 C 0.14 1.56 6.47 -3.51 -0.02 1.54 16 14 N -0.64 -8.30 2.93 -179.83 -0.53 -8.83 16 15 C 0.71 12.15 8.32 -86.91 -0.72 11.42 16 16 O -0.59 -12.26 15.84 5.29 0.08 -12.17 16 17 N -0.74 -12.78 5.47 -65.22 -0.36 -13.13 16 18 C 0.14 2.91 5.62 -4.05 -0.02 2.89 16 19 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 20 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 21 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 24 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 C 0.15 1.54 6.16 -5.04 -0.03 1.51 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 32 H 0.42 2.07 8.96 -34.47 -0.31 1.76 16 33 H 0.14 1.06 7.31 -52.48 -0.38 0.68 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.79 8.05 -52.49 -0.42 0.37 16 36 H 0.10 0.91 7.86 -51.93 -0.41 0.51 16 37 H 0.12 1.14 5.05 -51.93 -0.26 0.88 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.30 7.07 -51.93 -0.37 0.93 16 40 H 0.39 5.84 6.06 -40.82 -0.25 5.59 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.09 0.91 5.80 -51.93 -0.30 0.61 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -36.26 393.21 -11.51 -47.77 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.47 Total: 3.59 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.42 Total: -7.55 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.24 Total: -54.53 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.75 Total: -36.19 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 25.47 SS G_CDS: -0.54 Total: 24.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.26 -11.51 -47.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253416543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.426 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds