Wall clock time and date at job start Tue Mar 31 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00474 * 2 1 4 4 C 1.38756 * 120.05574 * 359.97438 * 3 2 1 5 5 C 1.38124 * 119.94443 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05557 * 0.02753 * 5 4 3 7 7 C 1.38244 * 120.11159 * 359.69660 * 6 5 4 8 8 C 1.38172 * 120.05445 * 0.55312 * 7 6 5 9 9 C 1.50698 * 120.02714 * 179.74492 * 8 7 6 10 10 H 1.08997 * 109.58817 * 205.19787 * 9 8 7 11 11 C 1.53199 * 109.58817 * 325.48122 * 9 8 7 12 12 C 1.53043 * 109.31251 * 174.41926 * 11 9 8 13 13 C 1.53036 * 109.53657 * 298.63707 * 12 11 9 14 14 H 1.09004 * 109.49694 * 181.35286 * 13 12 11 15 15 C 1.53001 * 109.49945 * 301.40809 * 13 12 11 16 16 C 1.53189 * 109.31778 * 61.36550 * 13 12 11 17 17 N 1.46924 * 108.77320 * 305.36382 * 16 13 12 18 18 S 1.65601 * 120.63235 * 233.62774 * 17 16 13 19 19 O 1.42095 * 104.27981 * 213.09301 * 18 17 16 20 20 O 1.42109 * 104.27335 * 340.94758 * 18 17 16 21 21 C 1.81394 * 104.44905 * 97.01615 * 18 17 16 22 22 C 1.53001 * 109.47280 * 188.62210 * 21 18 17 23 23 C 1.50693 * 109.47492 * 179.97438 * 22 21 18 24 24 H 1.08003 * 120.00175 * 359.97438 * 23 22 21 25 25 C 1.37879 * 120.00456 * 179.97438 * 23 22 21 26 26 N 1.31515 * 120.00257 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99737 * 0.02562 * 25 23 22 28 28 H 1.48506 * 109.46995 * 89.99851 * 27 25 23 29 29 H 1.48495 * 109.47314 * 209.99515 * 27 25 23 30 30 H 1.48498 * 109.47257 * 329.99970 * 27 25 23 31 31 H 1.09010 * 109.46991 * 300.00349 * 1 2 3 32 32 H 1.09002 * 109.46770 * 59.99801 * 1 2 3 33 33 H 1.08997 * 109.47695 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.02620 * 0.02562 * 4 3 2 35 35 H 1.07995 * 119.96635 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.94521 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.97406 * 180.28156 * 7 6 5 38 38 H 1.09002 * 109.49435 * 54.46987 * 11 9 8 39 39 H 1.08994 * 109.49375 * 294.37504 * 11 9 8 40 40 H 1.08993 * 109.45772 * 178.61397 * 12 11 9 41 41 H 1.09003 * 109.44382 * 58.64926 * 12 11 9 42 42 H 1.09008 * 109.47018 * 60.00806 * 15 13 12 43 43 H 1.08997 * 109.47291 * 300.00802 * 15 13 12 44 44 H 1.09000 * 109.47072 * 179.97438 * 15 13 12 45 45 H 1.09000 * 109.58913 * 65.14863 * 16 13 12 46 46 H 1.08994 * 109.58746 * 185.57729 * 16 13 12 47 47 H 1.08999 * 109.47189 * 308.61963 * 21 18 17 48 48 H 1.08995 * 109.47064 * 68.62103 * 21 18 17 49 49 H 1.08998 * 109.47269 * 300.00238 * 22 21 18 50 50 H 1.09004 * 109.47435 * 60.00041 * 22 21 18 51 51 H 0.96998 * 119.99660 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 -0.0005 5 6 1.9211 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0016 7 6 4.0561 2.5169 0.0046 8 6 3.4311 1.2846 0.0000 9 6 4.2537 0.0219 0.0010 10 1 3.6763 -0.7907 -0.4399 11 6 5.5337 0.2421 -0.8114 12 6 6.4282 -0.9939 -0.6914 13 6 6.8163 -1.2045 0.7739 14 1 7.4728 -2.0708 0.8555 15 6 7.5432 0.0376 1.2933 16 6 5.5509 -1.4411 1.6043 17 7 4.6228 -0.3243 1.3804 18 16 4.0047 0.5283 2.6585 19 8 2.7008 0.9005 2.2338 20 8 4.1945 -0.3287 3.7760 21 6 5.0732 1.9885 2.7875 22 6 4.7381 2.7541 4.0690 23 6 5.6261 3.9668 4.1766 24 1 6.3569 4.1709 3.4079 25 6 5.5059 4.8159 5.2562 26 7 6.2806 5.8746 5.3498 27 14 4.2425 4.4626 6.5861 28 1 4.8559 3.6132 7.6385 29 1 3.7850 5.7414 7.1865 30 1 3.0823 3.7523 5.9905 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 0.2130 2.3204 -0.0005 35 1 1.3342 4.5113 -0.0019 36 1 3.7925 4.6379 -0.0025 37 1 5.1346 2.5749 0.0088 38 1 6.0635 1.1134 -0.4264 39 1 5.2767 0.4051 -1.8580 40 1 7.3286 -0.8498 -1.2884 41 1 5.8885 -1.8690 -1.0535 42 1 6.8859 0.9035 1.2127 43 1 8.4419 0.2072 0.7004 44 1 7.8189 -0.1127 2.3371 45 1 5.0805 -2.3746 1.2956 46 1 5.8119 -1.4930 2.6612 47 1 6.1165 1.6740 2.8144 48 1 4.9107 2.6349 1.9251 49 1 3.6948 3.0686 4.0422 50 1 4.9006 2.1077 4.9316 51 1 6.1961 6.4716 6.1095 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285427082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:23 Heat of formation + Delta-G solvation = -73.231044 kcal Electronic energy + Delta-G solvation = -34739.488502 eV Core-core repulsion = 30538.788062 eV Total energy + Delta-G solvation = -4200.700440 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.48490 -38.86717 -37.27571 -36.42927 -35.35938 -33.91996 -33.62880 -32.24366 -31.45469 -29.92252 -29.77447 -27.30751 -26.64929 -25.87347 -24.49750 -23.55993 -21.90987 -21.29653 -20.93741 -19.33529 -18.25815 -18.05588 -17.40519 -16.80970 -16.15606 -15.93482 -15.55964 -15.39180 -15.30642 -14.94746 -14.57870 -14.36193 -14.23978 -14.17339 -13.84785 -13.80946 -13.50954 -13.15501 -12.85072 -12.68091 -12.57710 -12.04274 -12.01346 -11.83174 -11.78650 -11.57911 -11.52918 -11.42313 -11.32765 -11.17427 -11.10090 -11.03971 -10.97653 -10.84792 -10.58121 -10.39922 -10.36291 -10.22230 -10.08011 -9.61284 -9.32143 -8.68542 -8.62724 -8.57527 -7.74411 -6.12902 -4.12587 0.83330 1.42376 1.76919 3.09500 3.28201 3.35214 3.40434 3.43160 4.01794 4.37930 4.39142 4.45665 4.61847 4.75695 4.80288 4.93382 4.98655 5.05400 5.17988 5.19562 5.22243 5.24445 5.29352 5.34315 5.47203 5.49010 5.57382 5.59510 5.60794 5.67899 5.72457 5.74852 5.80231 5.82529 5.91656 5.92878 5.99800 6.11419 6.15585 6.20037 6.32853 6.36082 6.47124 6.56486 6.63021 6.77179 6.82649 6.91164 6.98851 7.02976 7.59020 7.60372 8.41868 8.88952 9.47919 10.99599 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.009117 B = 0.004963 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.495914 B = 5640.559935 C = 6876.411861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.223 3.777 4 C -0.215 4.215 5 C -0.063 4.063 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.170 4.170 9 C 0.217 3.783 10 H 0.085 0.915 11 C -0.134 4.134 12 C -0.109 4.109 13 C -0.107 4.107 14 H 0.079 0.921 15 C -0.161 4.161 16 C 0.124 3.876 17 N -0.994 5.994 18 S 2.586 3.414 19 O -0.951 6.951 20 O -0.974 6.974 21 C -0.599 4.599 22 C -0.001 4.001 23 C -0.511 4.511 24 H 0.078 0.922 25 C 0.072 3.928 26 N -0.897 5.897 27 Si 0.866 3.134 28 H -0.272 1.272 29 H -0.282 1.282 30 H -0.263 1.263 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.133 0.867 49 H 0.026 0.974 50 H 0.025 0.975 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 -12.981 -16.334 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.176 3.824 4 C -0.234 4.234 5 C -0.081 4.081 6 C -0.179 4.179 7 C -0.098 4.098 8 C -0.172 4.172 9 C 0.112 3.888 10 H 0.103 0.897 11 C -0.173 4.173 12 C -0.147 4.147 13 C -0.127 4.127 14 H 0.097 0.903 15 C -0.218 4.218 16 C -0.001 4.001 17 N -0.830 5.830 18 S 2.686 3.314 19 O -0.941 6.941 20 O -0.964 6.964 21 C -0.731 4.731 22 C -0.040 4.040 23 C -0.550 4.550 24 H 0.096 0.904 25 C -0.130 4.130 26 N -0.535 5.535 27 Si 0.692 3.308 28 H -0.197 1.197 29 H -0.208 1.208 30 H -0.188 1.188 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.141 0.859 48 H 0.150 0.850 49 H 0.045 0.955 50 H 0.043 0.957 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.945 -13.361 -15.684 21.444 hybrid contribution -0.290 0.558 0.722 0.958 sum -6.234 -12.803 -14.962 20.655 Atomic orbital electron populations 1.22993 0.78965 1.03388 1.01224 1.85997 1.20888 1.27307 1.87873 1.18287 0.90994 0.83860 0.89241 1.21047 0.99564 0.92440 1.10309 1.20919 0.94733 0.96810 0.95680 1.20973 0.93917 0.98374 1.04636 1.20963 1.00053 0.91278 0.97511 1.19117 0.91144 0.94798 1.12175 1.19385 0.93594 0.93994 0.81826 0.89662 1.22118 0.95913 0.99180 1.00101 1.21483 0.99319 0.98001 0.95866 1.21496 0.96566 0.99102 0.95490 0.90261 1.22065 1.00334 0.98102 1.01323 1.21437 0.88814 0.88894 1.00960 1.57952 1.61218 1.45022 1.18776 1.05739 0.76537 0.76520 0.72559 1.93591 1.36210 1.84292 1.80055 1.93501 1.87135 1.64634 1.51169 1.30722 1.14897 1.17595 1.09854 1.19323 0.98322 0.96794 0.89561 1.20833 1.19517 1.06014 1.08685 0.90425 1.24951 0.95542 0.94742 0.97745 1.69880 1.38873 1.13971 1.30808 0.86981 0.82859 0.78216 0.82730 1.19715 1.20814 1.18789 0.92375 0.93122 0.88801 0.85971 0.86101 0.85593 0.84959 0.90522 0.90831 0.91758 0.91918 0.91691 0.92366 0.92245 0.91443 0.88910 0.85923 0.84955 0.95531 0.95676 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.44 9.13 -35.46 -0.32 -4.77 16 3 C 0.22 3.39 4.05 -39.22 -0.16 3.23 16 4 C -0.21 -3.07 9.02 -39.43 -0.36 -3.42 16 5 C -0.06 -0.89 10.04 -39.61 -0.40 -1.29 16 6 C -0.16 -2.34 10.04 -39.56 -0.40 -2.74 16 7 C -0.08 -1.14 6.09 -39.60 -0.24 -1.38 16 8 C -0.17 -2.48 2.91 -104.47 -0.30 -2.79 16 9 C 0.22 2.81 2.93 -68.75 -0.20 2.60 16 10 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 11 C -0.13 -1.38 4.61 -26.61 -0.12 -1.50 16 12 C -0.11 -0.98 5.43 -26.69 -0.14 -1.12 16 13 C -0.11 -1.07 3.21 -90.50 -0.29 -1.36 16 14 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 15 C -0.16 -1.83 8.30 37.16 0.31 -1.52 16 16 C 0.12 1.53 5.75 -3.71 -0.02 1.51 16 17 N -0.99 -14.39 2.65 -107.70 -0.29 -14.68 16 18 S 2.59 48.67 4.85 -107.50 -0.52 48.15 16 19 O -0.95 -19.02 12.64 -64.47 -0.81 -19.83 16 20 O -0.97 -20.94 16.50 -57.54 -0.95 -21.89 16 21 C -0.60 -11.80 5.41 37.16 0.20 -11.60 16 22 C 0.00 -0.02 4.05 -27.89 -0.11 -0.13 16 23 C -0.51 -14.35 9.66 -34.44 -0.33 -14.69 16 24 H 0.08 2.27 7.99 -52.48 -0.42 1.86 16 25 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 26 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 27 Si 0.87 21.90 27.47 -169.99 -4.67 17.24 16 28 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 31 H 0.06 0.64 7.66 -51.92 -0.40 0.25 16 32 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 1.69 5.69 -52.49 -0.30 1.40 16 38 H 0.08 0.81 4.43 -51.93 -0.23 0.58 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.80 4.12 -51.92 -0.21 0.59 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.24 6.89 -51.93 -0.36 0.89 16 47 H 0.12 2.23 6.36 -51.92 -0.33 1.90 16 48 H 0.13 2.45 4.39 -51.93 -0.23 2.22 16 49 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 50 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 51 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -34.63 387.95 -10.37 -45.00 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.75 Total: 4.21 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -1.68 Total: -32.89 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.49 Total: -41.07 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -2.09 Total: -46.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 48.67 SS G_CDS: -0.52 Total: 48.15 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.63 -10.37 -45.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285427082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.231 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds