Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00549 * 2 1 4 4 C 1.38749 * 120.05519 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.94626 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05682 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10777 * 359.70286 * 6 5 4 8 8 C 1.38175 * 120.05454 * 0.55112 * 7 6 5 9 9 C 1.50705 * 120.02520 * 179.74538 * 8 7 6 10 10 H 1.08999 * 109.58012 * 157.57506 * 9 8 7 11 11 C 1.53195 * 109.58444 * 37.29747 * 9 8 7 12 12 C 1.53037 * 109.30737 * 185.57313 * 11 9 8 13 13 C 1.53043 * 109.52992 * 61.37293 * 12 11 9 14 14 H 1.08995 * 109.50277 * 178.67187 * 13 12 11 15 15 C 1.53005 * 109.49549 * 58.57550 * 13 12 11 16 16 C 1.53194 * 109.31270 * 298.61351 * 13 12 11 17 17 N 1.46920 * 109.58829 * 278.00634 * 9 8 7 18 18 S 1.65602 * 120.63027 * 353.42137 * 17 9 8 19 19 O 1.42099 * 104.27409 * 200.50184 * 18 17 9 20 20 O 1.42101 * 104.27769 * 328.35407 * 18 17 9 21 21 C 1.81397 * 104.45157 * 84.43109 * 18 17 9 22 22 C 1.52999 * 109.47110 * 187.35532 * 21 18 17 23 23 C 1.50699 * 109.47394 * 179.97438 * 22 21 18 24 24 H 1.08002 * 119.99689 * 0.02562 * 23 22 21 25 25 C 1.37876 * 120.00482 * 179.97438 * 23 22 21 26 26 N 1.31512 * 119.99899 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99983 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47295 * 60.00458 * 27 25 23 29 29 H 1.48500 * 109.47038 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47435 * 300.00028 * 27 25 23 31 31 H 1.08996 * 109.47863 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46896 * 299.99846 * 1 2 3 33 33 H 1.08997 * 109.47054 * 59.99274 * 1 2 3 34 34 H 1.08003 * 120.02887 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.97374 * 179.97438 * 5 4 3 36 36 H 1.07994 * 119.94493 * 180.02562 * 6 5 4 37 37 H 1.07995 * 119.97582 * 180.27642 * 7 6 5 38 38 H 1.08999 * 109.49420 * 65.62685 * 11 9 8 39 39 H 1.08998 * 109.49712 * 305.52663 * 11 9 8 40 40 H 1.09008 * 109.45842 * 181.38529 * 12 11 9 41 41 H 1.09003 * 109.46612 * 301.35736 * 12 11 9 42 42 H 1.09000 * 109.47386 * 59.99814 * 15 13 12 43 43 H 1.08998 * 109.47338 * 179.97438 * 15 13 12 44 44 H 1.09006 * 109.47199 * 300.00397 * 15 13 12 45 45 H 1.08994 * 109.59613 * 294.86372 * 16 13 12 46 46 H 1.08996 * 109.70332 * 174.49820 * 16 13 12 47 47 H 1.09004 * 109.46905 * 307.35530 * 21 18 17 48 48 H 1.08996 * 109.47490 * 67.35319 * 21 18 17 49 49 H 1.09004 * 109.47235 * 299.99796 * 22 21 18 50 50 H 1.08997 * 109.47637 * 59.99640 * 22 21 18 51 51 H 0.96998 * 120.00189 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3752 -0.0005 5 6 1.9211 3.6046 -0.0011 6 6 3.3022 3.6756 -0.0016 7 6 4.0562 2.5169 0.0046 8 6 3.4312 1.2846 -0.0002 9 6 4.2538 0.0218 0.0008 10 1 3.6562 -0.8031 0.3887 11 6 5.4926 0.2166 0.8807 12 6 6.3926 -1.0159 0.7674 13 6 6.8517 -1.1825 -0.6831 14 1 7.5116 -2.0466 -0.7589 15 6 7.6018 0.0743 -1.1288 16 6 5.6283 -1.3934 -1.5806 17 7 4.6896 -0.2832 -1.3687 18 16 4.1339 0.6079 -2.6492 19 8 4.3462 -0.2296 -3.7773 20 8 2.8232 0.9975 -2.2624 21 6 5.2345 2.0486 -2.7098 22 6 4.7108 3.0473 -3.7437 23 6 5.6247 4.2445 -3.7937 24 1 6.4926 4.2883 -3.1524 25 6 5.3536 5.2833 -4.6588 26 7 4.2971 5.2297 -5.4400 27 14 6.4862 6.7675 -4.7200 28 1 7.8536 6.3313 -5.1008 29 1 5.9780 7.7368 -5.7237 30 1 6.5271 7.4146 -3.3841 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 0.2130 2.3204 -0.0014 35 1 1.3343 4.5113 -0.0019 36 1 3.7925 4.6378 -0.0016 37 1 5.1346 2.5748 0.0087 38 1 5.1849 0.3483 1.9180 39 1 6.0399 1.0987 0.5483 40 1 7.2630 -0.8904 1.4116 41 1 5.8368 -1.9012 1.0763 42 1 8.4706 0.2255 -0.4881 43 1 7.9290 -0.0449 -2.1617 44 1 6.9407 0.9378 -1.0541 45 1 5.1442 -2.3354 -1.3233 46 1 5.9384 -1.4154 -2.6253 47 1 5.2657 2.5235 -1.7291 48 1 6.2378 1.7278 -2.9901 49 1 4.6796 2.5724 -4.7244 50 1 3.7075 3.3681 -3.4634 51 1 4.1061 5.9606 -6.0484 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285427092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = -76.791434 kcal Electronic energy + Delta-G solvation = -34732.982552 eV Core-core repulsion = 30532.127722 eV Total energy + Delta-G solvation = -4200.854830 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.39359 -38.80973 -37.19729 -36.28327 -35.21253 -33.85372 -33.56528 -32.17152 -31.16600 -29.78442 -29.69927 -27.23947 -26.57358 -25.54818 -24.44982 -23.49440 -21.89949 -21.39152 -21.03160 -19.27474 -18.16609 -17.95964 -17.22740 -16.45435 -16.07700 -15.81214 -15.47306 -15.31206 -15.24259 -14.80788 -14.55321 -14.45868 -14.22150 -14.16749 -13.80039 -13.74191 -13.24182 -13.09326 -12.73315 -12.45568 -12.44598 -11.96801 -11.95431 -11.78321 -11.62838 -11.50191 -11.40962 -11.31266 -11.19653 -11.03720 -10.97920 -10.96248 -10.89956 -10.80211 -10.54695 -10.40148 -10.32802 -10.20030 -10.15294 -9.64781 -9.19709 -8.58071 -8.49010 -8.42744 -7.64442 -6.06958 -4.11595 0.96341 1.55246 1.88087 3.22164 3.28647 3.33784 3.35295 3.50517 4.13087 4.37995 4.50719 4.54633 4.67188 4.82749 4.85860 4.97918 5.04697 5.11842 5.25427 5.26945 5.28149 5.31091 5.36713 5.40750 5.52888 5.54520 5.61246 5.66990 5.68619 5.78179 5.79058 5.85006 5.87411 5.90314 5.95497 5.96139 6.03737 6.13046 6.19803 6.28814 6.38942 6.42019 6.63913 6.66637 6.72804 6.88883 6.91566 7.09278 7.38378 7.47515 7.67998 7.85967 8.25188 8.91282 9.52249 11.04079 Molecular weight = 367.17amu Principal moments of inertia in cm(-1) A = 0.009198 B = 0.004778 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.430623 B = 5858.688100 C = 7155.629938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.312 6.312 3 C 0.211 3.789 4 C -0.209 4.209 5 C -0.065 4.065 6 C -0.150 4.150 7 C -0.084 4.084 8 C -0.157 4.157 9 C 0.216 3.784 10 H 0.085 0.915 11 C -0.134 4.134 12 C -0.109 4.109 13 C -0.106 4.106 14 H 0.078 0.922 15 C -0.160 4.160 16 C 0.125 3.875 17 N -0.996 5.996 18 S 2.588 3.412 19 O -0.978 6.978 20 O -0.947 6.947 21 C -0.603 4.603 22 C 0.037 3.963 23 C -0.513 4.513 24 H 0.059 0.941 25 C 0.059 3.941 26 N -0.891 5.891 27 Si 0.896 3.104 28 H -0.276 1.276 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.126 0.874 48 H 0.114 0.886 49 H 0.024 0.976 50 H 0.034 0.966 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 -11.463 16.253 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.165 3.835 4 C -0.228 4.228 5 C -0.083 4.083 6 C -0.168 4.168 7 C -0.102 4.102 8 C -0.159 4.159 9 C 0.111 3.889 10 H 0.103 0.897 11 C -0.172 4.172 12 C -0.147 4.147 13 C -0.126 4.126 14 H 0.097 0.903 15 C -0.217 4.217 16 C -0.001 4.001 17 N -0.832 5.832 18 S 2.688 3.312 19 O -0.968 6.968 20 O -0.937 6.937 21 C -0.735 4.735 22 C -0.002 4.002 23 C -0.553 4.553 24 H 0.077 0.923 25 C -0.143 4.143 26 N -0.530 5.530 27 Si 0.723 3.277 28 H -0.202 1.202 29 H -0.212 1.212 30 H -0.201 1.201 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.109 0.891 47 H 0.144 0.856 48 H 0.132 0.868 49 H 0.042 0.958 50 H 0.052 0.948 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.828 -11.882 15.541 19.648 hybrid contribution 0.877 1.423 -0.088 1.674 sum -0.951 -10.459 15.453 18.684 Atomic orbital electron populations 1.22987 0.79004 1.03332 1.01255 1.85989 1.20869 1.27402 1.88154 1.18283 0.91006 0.83776 0.90474 1.21026 0.99454 0.92462 1.09883 1.20888 0.94738 0.96756 0.95920 1.20929 0.93889 0.98277 1.03728 1.20906 0.99707 0.91381 0.98229 1.19045 0.91115 0.94629 1.11151 1.19394 0.93247 0.94430 0.81871 0.89696 1.22107 0.96249 0.99147 0.99727 1.21484 0.99121 0.98109 0.95943 1.21493 0.96644 0.98986 0.95513 0.90345 1.22035 1.00143 0.98120 1.01370 1.21408 0.88895 0.89268 1.00486 1.58027 1.60245 1.45146 1.19749 1.05751 0.76781 0.76248 0.72439 1.93491 1.87163 1.65867 1.50323 1.93615 1.35449 1.83783 1.80873 1.30837 1.14562 1.17342 1.10787 1.18841 0.97605 0.92621 0.91116 1.20938 1.10055 1.02112 1.22168 0.92265 1.25033 0.95394 0.98518 0.95395 1.69950 1.26433 1.32766 1.23805 0.86601 0.80921 0.82286 0.77873 1.20150 1.21167 1.20119 0.88833 0.93139 0.92374 0.86058 0.86195 0.85724 0.85188 0.90888 0.90641 0.91844 0.91906 0.92521 0.92387 0.91688 0.91530 0.89052 0.85612 0.86781 0.95769 0.94750 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.70 9.32 -27.79 -0.26 -4.96 16 3 C 0.21 3.40 4.22 -39.22 -0.17 3.23 16 4 C -0.21 -3.21 9.03 -39.44 -0.36 -3.57 16 5 C -0.06 -0.99 10.04 -39.61 -0.40 -1.39 16 6 C -0.15 -2.37 10.04 -39.56 -0.40 -2.77 16 7 C -0.08 -1.29 6.37 -39.60 -0.25 -1.54 16 8 C -0.16 -2.43 2.78 -104.47 -0.29 -2.72 16 9 C 0.22 2.93 2.96 -68.75 -0.20 2.72 16 10 H 0.09 1.14 7.31 -51.93 -0.38 0.76 16 11 C -0.13 -1.43 4.65 -26.61 -0.12 -1.55 16 12 C -0.11 -1.00 5.43 -26.69 -0.14 -1.15 16 13 C -0.11 -1.08 3.21 -90.49 -0.29 -1.37 16 14 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 15 C -0.16 -1.79 8.56 37.16 0.32 -1.47 16 16 C 0.12 1.59 5.74 -3.71 -0.02 1.57 16 17 N -1.00 -15.04 2.65 -107.70 -0.29 -15.32 16 18 S 2.59 51.07 4.83 -107.50 -0.52 50.55 16 19 O -0.98 -22.03 16.54 -57.54 -0.95 -22.98 16 20 O -0.95 -20.22 12.89 -62.34 -0.80 -21.03 16 21 C -0.60 -12.25 4.81 37.16 0.18 -12.07 16 22 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 23 C -0.51 -14.14 9.11 -34.44 -0.31 -14.46 16 24 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 25 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 26 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 27 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.46 7.66 -51.92 -0.40 0.06 16 33 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 34 H 0.12 1.57 6.30 -52.48 -0.33 1.24 16 35 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 36 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.13 1.77 5.17 -52.49 -0.27 1.50 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.82 4.48 -51.93 -0.23 0.59 16 40 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.80 4.47 -51.93 -0.23 0.57 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.26 6.93 -51.93 -0.36 0.90 16 47 H 0.13 2.31 4.18 -51.92 -0.22 2.10 16 48 H 0.11 2.15 7.58 -51.93 -0.39 1.76 16 49 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -34.77 392.91 -10.71 -45.49 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.83 Total: 4.83 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: -1.71 Total: -32.81 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.45 Total: -41.22 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -2.01 Total: -48.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 51.07 SS G_CDS: -0.52 Total: 50.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.77 -10.71 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285427092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.302 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds