Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40195 * 120.21766 * 2 1 4 4 C 1.35195 * 120.15988 * 180.02562 * 3 2 1 5 5 N 1.36183 * 120.73762 * 359.67628 * 4 3 2 6 6 C 1.36709 * 120.46414 * 0.59889 * 5 4 3 7 7 C 1.36269 * 120.22372 * 180.02562 * 2 1 3 8 8 N 1.33179 * 120.83608 * 179.70465 * 6 5 4 9 9 C 1.32376 * 121.35410 * 359.72624 * 8 6 5 10 10 C 1.50707 * 119.97524 * 179.97438 * 9 8 6 11 11 N 1.46502 * 109.47013 * 295.02273 * 10 9 8 12 12 C 1.36934 * 120.00208 * 84.99577 * 11 10 9 13 13 H 1.07999 * 120.00300 * 303.48539 * 12 11 10 14 14 C 1.38814 * 119.99919 * 123.47828 * 12 11 10 15 15 N 1.31620 * 119.99998 * 158.78656 * 14 12 11 16 16 Si 1.86805 * 119.99837 * 338.78577 * 14 12 11 17 17 H 1.48500 * 109.46590 * 94.86424 * 16 14 12 18 18 H 1.48499 * 109.46949 * 214.85994 * 16 14 12 19 19 H 1.48496 * 109.47028 * 334.86529 * 16 14 12 20 20 S 1.65602 * 119.99842 * 265.00080 * 11 10 9 21 21 O 1.42097 * 106.40200 * 197.37889 * 20 11 10 22 22 O 1.42099 * 106.40215 * 330.29648 * 20 11 10 23 23 N 1.65600 * 107.21950 * 83.83670 * 20 11 10 24 24 C 1.46494 * 120.00111 * 83.68695 * 23 20 11 25 25 C 1.46503 * 119.99831 * 263.68437 * 23 20 11 26 26 C 1.38126 * 120.05501 * 0.02562 * 9 8 6 27 27 C 1.35027 * 119.65941 * 179.77046 * 5 4 3 28 28 O 1.22080 * 120.52470 * 0.56884 * 27 5 4 29 29 H 1.08991 * 109.47530 * 269.98142 * 1 2 3 30 30 H 1.09004 * 109.47215 * 29.98295 * 1 2 3 31 31 H 1.09004 * 109.46703 * 149.97571 * 1 2 3 32 32 H 1.08004 * 119.91934 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.63014 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.27452 * 359.97438 * 7 2 1 35 35 H 1.09002 * 109.46954 * 55.01831 * 10 9 8 36 36 H 1.08998 * 109.47146 * 175.02343 * 10 9 8 37 37 H 0.97005 * 119.99894 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.47364 * 94.26325 * 24 23 20 39 39 H 1.09003 * 109.47210 * 214.26776 * 24 23 20 40 40 H 1.09008 * 109.47358 * 334.26591 * 24 23 20 41 41 H 1.08993 * 109.46846 * 90.00128 * 25 23 20 42 42 H 1.09000 * 109.47171 * 210.00099 * 25 23 20 43 43 H 1.08996 * 109.47237 * 329.99820 * 25 23 20 44 44 H 1.08001 * 120.53852 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.2115 0.0000 4 6 3.5645 1.2101 -0.0005 5 7 4.2594 0.0389 0.0056 6 6 3.5997 -1.1585 0.0000 7 6 2.1929 -1.1775 -0.0005 8 7 4.2718 -2.3082 0.0000 9 6 5.5953 -2.3323 -0.0001 10 6 6.3244 -3.6513 0.0005 11 7 6.0494 -4.3607 1.2524 12 6 4.9240 -5.1321 1.3694 13 1 3.9508 -4.6974 1.1950 14 6 5.0340 -6.4728 1.7120 15 7 4.0022 -7.1072 2.2271 16 14 6.6464 -7.3765 1.4419 17 1 7.4425 -7.3536 2.6953 18 1 6.3669 -8.7837 1.0587 19 1 7.4114 -6.7106 0.3573 20 16 7.0994 -4.2297 2.5263 21 8 6.8025 -5.3075 3.4035 22 8 8.3872 -4.0171 1.9645 23 7 6.7101 -2.8421 3.3418 24 6 5.6356 -2.8545 4.3375 25 6 7.4403 -1.6019 3.0675 26 6 6.3088 -1.1496 0.0004 27 6 5.6094 0.0629 0.0002 28 8 6.2107 1.1254 0.0004 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6748 2.1481 0.0004 33 1 4.0994 2.1483 -0.0001 34 1 1.6611 -2.1174 -0.0005 35 1 5.9844 -4.2547 -0.8412 36 1 7.3962 -3.4741 -0.0888 37 1 4.0792 -8.0440 2.4668 38 1 6.0597 -3.0217 5.3276 39 1 5.1149 -1.8971 4.3221 40 1 4.9327 -3.6542 4.1036 41 1 6.9406 -1.0554 2.2678 42 1 7.4641 -0.9877 3.9677 43 1 8.4594 -1.8401 2.7632 44 1 7.3887 -1.1602 0.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289364557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = -6.306204 kcal Electronic energy + Delta-G solvation = -32947.631330 eV Core-core repulsion = 28608.178193 eV Total energy + Delta-G solvation = -4339.453137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.119 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.55280 -38.51000 -37.75311 -36.17133 -35.57200 -35.28634 -34.71851 -34.51215 -32.41559 -31.38214 -30.40143 -28.36636 -27.44660 -27.23783 -24.27392 -23.83779 -23.39180 -23.30750 -22.04938 -19.10954 -18.80655 -18.14617 -17.82300 -17.27990 -16.64652 -16.38700 -15.90790 -15.54502 -15.34092 -15.02049 -14.88421 -14.68261 -14.20214 -14.02232 -13.86507 -13.67664 -13.60389 -13.12594 -12.92130 -12.83625 -12.62892 -12.51181 -12.30954 -12.08425 -11.97514 -11.85167 -11.75325 -11.59974 -11.35400 -11.22072 -10.86237 -10.78212 -10.45903 -10.32760 -10.22052 -10.10732 -9.82842 -9.72372 -9.33934 -8.77867 -8.35567 -7.95392 -7.58206 -6.47931 -4.21893 0.14955 0.51840 1.68588 2.11854 2.20969 2.60096 3.28263 3.39041 3.51979 3.77808 3.94606 3.99316 4.24696 4.33335 4.36272 4.45965 4.58959 4.79478 4.85991 4.94024 5.06300 5.24284 5.29202 5.40227 5.42098 5.47830 5.56615 5.61728 5.70292 5.85035 5.88536 5.91735 5.94495 6.02633 6.12147 6.14415 6.18365 6.25815 6.34236 6.49010 6.60339 6.62787 6.92970 7.30668 7.71746 7.81158 8.04531 8.40191 9.06124 9.13133 10.55982 Molecular weight = 366.12amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.004380 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.610262 B = 6391.353697 C = 7419.673957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.017 4.017 3 C -0.169 4.169 4 C 0.097 3.903 5 N -0.433 5.433 6 C 0.384 3.616 7 C -0.128 4.128 8 N -0.495 5.495 9 C 0.211 3.789 10 C 0.161 3.839 11 N -0.839 5.839 12 C -0.283 4.283 13 H 0.106 0.894 14 C 0.102 3.898 15 N -0.826 5.826 16 Si 0.830 3.170 17 H -0.243 1.243 18 H -0.279 1.279 19 H -0.257 1.257 20 S 2.663 3.337 21 O -0.965 6.965 22 O -1.018 7.018 23 N -1.018 6.018 24 C 0.106 3.894 25 C 0.087 3.913 26 C -0.336 4.336 27 C 0.510 3.490 28 O -0.548 6.548 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.279 0.721 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 14.842 -4.398 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.023 4.023 3 C -0.191 4.191 4 C -0.026 4.026 5 N -0.137 5.137 6 C 0.141 3.859 7 C -0.149 4.149 8 N -0.218 5.218 9 C 0.079 3.921 10 C 0.033 3.967 11 N -0.667 5.667 12 C -0.427 4.427 13 H 0.123 0.877 14 C -0.114 4.114 15 N -0.461 5.461 16 Si 0.654 3.346 17 H -0.167 1.167 18 H -0.205 1.205 19 H -0.181 1.181 20 S 2.687 3.313 21 O -0.948 6.948 22 O -1.002 7.002 23 N -0.853 5.853 24 C -0.041 4.041 25 C -0.060 4.060 26 C -0.362 4.362 27 C 0.317 3.683 28 O -0.430 6.430 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.171 0.829 33 H 0.194 0.806 34 H 0.185 0.815 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.947 13.996 -3.946 16.116 hybrid contribution 0.924 0.564 0.074 1.085 sum -6.023 14.560 -3.872 16.225 Atomic orbital electron populations 1.20907 0.89214 1.03905 1.03530 1.20196 0.97547 0.92168 0.92395 1.20851 0.92227 0.99501 1.06488 1.22220 0.93426 0.91027 0.95879 1.44480 1.10594 1.07489 1.51134 1.20809 0.94337 0.79894 0.90896 1.20895 0.88932 1.00369 1.04666 1.68988 1.09374 1.19736 1.23671 1.22434 0.89109 0.96911 0.83653 1.20432 0.97451 0.87649 0.91178 1.53257 1.40030 1.54651 1.18718 1.18817 0.86446 0.89370 1.48023 0.87678 1.25709 0.96864 0.96490 0.92338 1.69770 1.31436 1.11824 1.33079 0.87481 0.85655 0.80818 0.80655 1.16732 1.20479 1.18137 1.08277 0.74823 0.73703 0.74493 1.93516 1.84958 1.51389 1.64939 1.93396 1.41821 1.86382 1.78607 1.58430 1.46478 1.26053 1.54383 1.21270 0.89744 1.02037 0.91002 1.21471 0.96798 0.87104 1.00592 1.22703 1.02555 0.90008 1.20901 1.17165 0.79111 0.92148 0.79864 1.90943 1.65483 1.32470 1.54079 0.89760 0.90671 0.90210 0.82914 0.80616 0.81523 0.87549 0.88918 0.91047 0.94100 0.93237 0.90012 0.93457 0.92501 0.90836 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.03 36.01 0.36 -0.25 16 2 C -0.02 -0.14 5.88 -104.60 -0.62 -0.75 16 3 C -0.17 -1.31 9.68 -39.93 -0.39 -1.69 16 4 C 0.10 1.03 10.08 -16.70 -0.17 0.87 16 5 N -0.43 -6.20 2.76 -65.37 -0.18 -6.38 16 6 C 0.38 5.69 7.33 -155.95 -1.14 4.55 16 7 C -0.13 -1.46 9.61 -39.37 -0.38 -1.84 16 8 N -0.50 -8.76 9.82 -8.56 -0.08 -8.84 16 9 C 0.21 3.82 6.37 -82.40 -0.52 3.30 16 10 C 0.16 3.16 6.04 -5.19 -0.03 3.13 16 11 N -0.84 -19.47 2.08 -61.08 -0.13 -19.60 16 12 C -0.28 -7.16 9.34 -15.06 -0.14 -7.30 16 13 H 0.11 2.75 7.81 -52.49 -0.41 2.34 16 14 C 0.10 2.75 4.61 -17.43 -0.08 2.67 16 15 N -0.83 -22.77 13.97 55.49 0.78 -21.99 16 16 Si 0.83 21.36 25.41 -169.99 -4.32 17.04 16 17 H -0.24 -6.66 6.30 56.52 0.36 -6.30 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 20 S 2.66 64.71 4.82 -107.50 -0.52 64.20 16 21 O -0.96 -26.39 12.34 -57.17 -0.71 -27.10 16 22 O -1.02 -25.43 15.34 -57.17 -0.88 -26.31 16 23 N -1.02 -20.84 3.64 -129.21 -0.47 -21.31 16 24 C 0.11 1.96 10.34 59.84 0.62 2.58 16 25 C 0.09 1.54 10.64 59.85 0.64 2.17 16 26 C -0.34 -5.79 7.40 -38.97 -0.29 -6.08 16 27 C 0.51 8.62 7.36 -15.50 -0.11 8.51 16 28 O -0.55 -10.17 16.69 4.85 0.08 -10.09 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.18 1.67 7.34 -52.49 -0.39 1.28 16 34 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.11 1.96 8.08 -51.93 -0.42 1.54 16 36 H 0.09 1.72 6.76 -51.93 -0.35 1.37 16 37 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.08 1.68 7.81 -51.92 -0.41 1.28 16 41 H 0.05 0.83 5.65 -51.93 -0.29 0.53 16 42 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.07 1.32 7.00 -51.93 -0.36 0.95 16 44 H 0.16 2.59 7.97 -52.49 -0.42 2.17 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -34.08 373.58 -8.65 -42.73 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.60 Total: 2.17 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.25 Total: 9.87 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -0.09 Total: -78.13 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -1.50 Total: -63.49 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.32 Total: 17.04 kcal Atomic # 16 Polarization: 64.71 SS G_CDS: -0.52 Total: 64.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.08 -8.65 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289364557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.419 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds