Wall clock time and date at job start Tue Mar 31 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.46894 * 2 1 4 4 C 1.46493 * 120.00318 * 265.66850 * 3 2 1 5 5 C 1.50704 * 109.47255 * 270.00312 * 4 3 2 6 6 H 1.07999 * 119.99344 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99851 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99987 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00560 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47169 * 89.99395 * 9 7 5 11 11 H 1.48492 * 109.47190 * 209.99908 * 9 7 5 12 12 H 1.48502 * 109.46758 * 330.00063 * 9 7 5 13 13 C 1.34777 * 119.99570 * 85.67331 * 3 2 1 14 14 O 1.21649 * 120.00078 * 175.05480 * 13 3 2 15 15 C 1.47175 * 120.00155 * 355.04798 * 13 3 2 16 16 C 1.35082 * 122.47605 * 178.54451 * 15 13 3 17 17 S 1.76188 * 108.24944 * 180.02562 * 16 15 13 18 18 C 1.76045 * 90.17232 * 359.97438 * 17 16 15 19 19 N 1.38562 * 125.18699 * 179.97438 * 18 17 16 20 20 C 1.39768 * 119.99735 * 354.27187 * 19 18 17 21 21 C 1.38893 * 120.04866 * 322.89072 * 20 19 18 22 22 C 1.38332 * 119.94882 * 179.77101 * 21 20 19 23 23 F 1.35092 * 119.97565 * 180.25737 * 22 21 20 24 24 C 1.38485 * 120.04868 * 0.50483 * 22 21 20 25 25 C 1.38478 * 120.09690 * 359.75039 * 24 22 21 26 26 F 1.35108 * 119.97372 * 179.97438 * 25 24 22 27 27 C 1.38332 * 120.05192 * 359.97438 * 25 24 22 28 28 N 1.29444 * 109.63049 * 0.26517 * 18 17 16 29 29 H 1.08996 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47072 * 299.99828 * 1 2 3 31 31 H 1.09001 * 109.46775 * 59.99995 * 1 2 3 32 32 H 1.09002 * 109.46741 * 240.00268 * 2 1 3 33 33 H 1.08994 * 109.46713 * 120.00403 * 2 1 3 34 34 H 1.09008 * 109.47019 * 30.00038 * 4 3 2 35 35 H 1.09000 * 109.47067 * 150.00139 * 4 3 2 36 36 H 0.96994 * 120.00219 * 180.02562 * 8 7 5 37 37 H 1.07993 * 125.87278 * 0.03645 * 16 15 13 38 38 H 0.96995 * 120.00278 * 174.54438 * 19 18 17 39 39 H 1.08002 * 120.02302 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.94836 * 179.72429 * 24 22 21 41 41 H 1.07996 * 120.02854 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3529 2.0400 -1.2650 5 6 3.8033 1.7936 -1.5915 6 1 4.4146 1.2048 -0.9237 7 6 4.3495 2.3190 -2.7433 8 7 5.6154 2.1044 -3.0281 9 14 3.2919 3.3367 -3.8988 10 1 3.3663 4.7672 -3.5072 11 1 3.7853 3.1781 -5.2903 12 1 1.8832 2.8739 -3.8172 13 6 2.1599 2.0459 1.1639 14 8 2.6495 3.1595 1.1728 15 6 1.7221 1.4245 2.4242 16 6 1.8664 2.0330 3.6214 17 16 1.2222 0.9640 4.8650 18 6 0.8092 -0.2262 3.6353 19 7 0.2091 -1.4510 3.8793 20 6 -0.0068 -1.8739 5.1939 21 6 0.9315 -1.5916 6.1783 22 6 0.7135 -2.0070 7.4796 23 9 1.6233 -1.7281 8.4385 24 6 -0.4343 -2.7129 7.7992 25 6 -1.3686 -3.0001 6.8182 26 9 -2.4872 -3.6894 7.1327 27 6 -1.1574 -2.5817 5.5167 28 7 1.1572 0.2147 2.4691 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.7275 1.6362 -2.0614 35 1 2.1780 3.1120 -1.1738 36 1 5.9997 2.4743 -3.8381 37 1 2.3017 3.0073 3.7877 38 1 -0.0576 -2.0167 3.1380 39 1 1.8287 -1.0446 5.9287 40 1 -0.6007 -3.0403 8.8148 41 1 -1.8861 -2.8062 4.7519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295127005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:09 Heat of formation + Delta-G solvation = -18.974300 kcal Electronic energy + Delta-G solvation = -29705.976070 eV Core-core repulsion = 25157.167425 eV Total energy + Delta-G solvation = -4548.808645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.57170 -49.51806 -40.55512 -39.88879 -38.13800 -35.89902 -35.42429 -32.64858 -31.17402 -30.81492 -30.25061 -29.12286 -27.92198 -25.32560 -23.91118 -23.54133 -22.84221 -22.30034 -20.89782 -19.85211 -18.42269 -18.03148 -17.61559 -17.16630 -16.96310 -16.89118 -16.51563 -16.21130 -16.04923 -15.93331 -15.82675 -15.24292 -15.05849 -14.80021 -14.34488 -14.10113 -13.54567 -13.52263 -13.35695 -13.16236 -12.90448 -12.58608 -12.49541 -12.44022 -12.17783 -11.83668 -11.70556 -11.44226 -11.29337 -10.88762 -10.69439 -10.50129 -10.15445 -9.76114 -9.62665 -9.50051 -9.42338 -9.28681 -9.14347 -8.56913 -8.11437 -7.65931 -6.06426 -4.05000 0.14394 0.30530 0.70367 0.80044 1.44063 2.16134 2.20790 2.73299 3.30538 3.33534 3.36486 3.38102 3.72023 3.79228 3.89384 4.19997 4.22817 4.27843 4.38405 4.41316 4.66010 5.14893 5.20529 5.22816 5.27761 5.32801 5.36011 5.39401 5.61079 5.70866 5.84103 5.89911 5.93577 6.24717 6.28213 6.40576 6.61201 6.67351 6.80711 6.93146 7.33839 7.49928 7.62338 8.24183 8.47812 8.87394 8.98500 9.53454 11.07010 Molecular weight = 367.09amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.002188 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.979825 B =12796.129721 C =13448.599196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.571 5.571 4 C 0.216 3.784 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.577 3.423 14 O -0.531 6.531 15 C 0.060 3.940 16 C -0.203 4.203 17 S 0.091 5.909 18 C 0.306 3.694 19 N -0.627 5.627 20 C 0.230 3.770 21 C -0.212 4.212 22 C 0.172 3.828 23 F -0.122 7.122 24 C -0.215 4.215 25 C 0.165 3.835 26 F -0.125 7.125 27 C -0.194 4.194 28 N -0.480 5.480 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.191 0.809 38 H 0.430 0.570 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.408 -12.130 22.228 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.300 5.300 4 C 0.095 3.905 5 C -0.564 4.564 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.360 3.640 14 O -0.408 6.408 15 C -0.070 4.070 16 C -0.344 4.344 17 S 0.339 5.661 18 C -0.066 4.066 19 N -0.259 5.259 20 C 0.131 3.869 21 C -0.235 4.235 22 C 0.152 3.848 23 F -0.101 7.101 24 C -0.236 4.236 25 C 0.145 3.855 26 F -0.103 7.103 27 C -0.216 4.216 28 N -0.204 5.204 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.208 0.792 38 H 0.271 0.729 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.165 -11.697 22.730 30.246 hybrid contribution -0.249 0.505 -1.562 1.660 sum -16.415 -11.192 21.168 29.031 Atomic orbital electron populations 1.22070 0.96927 1.00804 1.01208 1.21735 0.93542 0.82933 1.03295 1.47793 1.61835 1.13755 1.06657 1.19728 0.97049 0.93672 0.80002 1.21306 0.93655 1.33983 1.07494 0.90701 1.24852 0.94887 0.95734 0.97543 1.69896 1.12206 1.45487 1.26012 0.86858 0.81061 0.81480 0.80353 1.19892 1.21070 1.19052 1.17067 0.79680 0.85277 0.82021 1.90812 1.44573 1.19584 1.85840 1.20348 1.01254 0.89666 0.95733 1.27031 1.08055 1.05833 0.93526 1.85145 1.60200 1.10085 1.10653 1.24280 0.98981 0.91448 0.91864 1.40931 1.63100 1.16149 1.05756 1.16852 0.91799 0.94687 0.83517 1.21120 1.01784 1.08532 0.92078 1.16811 0.86907 0.96069 0.85044 1.91578 1.64993 1.91330 1.62163 1.21007 0.94938 1.05994 1.01639 1.16831 0.83338 0.93027 0.92295 1.91572 1.48994 1.76345 1.93405 1.20817 0.98113 1.06302 0.96401 1.67176 1.18291 1.13924 1.21008 0.92797 0.92600 0.93580 0.90912 0.88644 0.94965 0.94644 0.92583 0.79172 0.72919 0.82970 0.82984 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.58 37.16 0.36 -1.78 16 2 C 0.11 1.87 5.68 -4.04 -0.02 1.85 16 3 N -0.57 -12.32 2.46 -176.41 -0.43 -12.75 16 4 C 0.22 5.38 4.17 -5.20 -0.02 5.36 16 5 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 6 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 9 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.58 12.35 7.61 -12.63 -0.10 12.25 16 14 O -0.53 -13.21 16.29 5.23 0.09 -13.13 16 15 C 0.06 1.00 6.31 -84.60 -0.53 0.46 16 16 C -0.20 -2.81 10.84 29.61 0.32 -2.49 16 17 S 0.09 0.92 19.74 -107.50 -2.12 -1.20 16 18 C 0.31 3.30 8.10 -87.92 -0.71 2.59 16 19 N -0.63 -4.78 5.48 -10.50 -0.06 -4.84 16 20 C 0.23 1.58 6.21 -83.75 -0.52 1.06 16 21 C -0.21 -1.58 8.16 -39.30 -0.32 -1.90 16 22 C 0.17 1.22 7.29 -39.46 -0.29 0.93 16 23 F -0.12 -0.98 17.26 2.25 0.04 -0.94 16 24 C -0.21 -1.29 10.00 -39.40 -0.39 -1.68 16 25 C 0.17 1.02 7.29 -39.46 -0.29 0.73 16 26 F -0.12 -0.85 17.27 2.25 0.04 -0.81 16 27 C -0.19 -1.10 9.95 -39.30 -0.39 -1.49 16 28 N -0.48 -6.60 4.83 -10.56 -0.05 -6.65 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.80 6.50 -51.93 -0.34 0.46 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 33 H 0.10 1.56 5.52 -51.93 -0.29 1.27 16 34 H 0.03 0.77 7.13 -51.92 -0.37 0.40 16 35 H 0.04 0.93 6.92 -51.93 -0.36 0.57 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.19 2.52 8.01 -52.49 -0.42 2.10 16 38 H 0.43 2.54 8.95 -40.82 -0.37 2.17 16 39 H 0.15 1.22 5.98 -50.72 -0.30 0.92 16 40 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -34.08 367.93 -8.35 -42.43 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.14 Total: 0.20 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.35 Total: 2.25 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.23 Total: -51.36 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.08 Total: -1.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.12 Total: -1.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.08 -8.35 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295127005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.453 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds