Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86802 * 119.99730 * 2 1 4 4 H 1.48495 * 109.46883 * 269.99549 * 3 2 1 5 5 H 1.48495 * 109.47208 * 29.99669 * 3 2 1 6 6 H 1.48500 * 109.47006 * 149.99573 * 3 2 1 7 7 C 1.40043 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.46369 * 120.00270 * 0.02562 * 7 2 1 10 10 O 1.21689 * 120.00136 * 0.02562 * 9 7 2 11 11 N 1.34783 * 120.00193 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99822 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47189 * 35.00463 * 12 11 9 14 14 C 1.50696 * 109.47416 * 274.99975 * 12 11 9 15 15 C 1.38249 * 119.97124 * 139.99767 * 14 12 11 16 16 C 1.38196 * 120.02483 * 180.02562 * 15 14 12 17 17 C 1.38458 * 119.97492 * 0.02940 * 16 15 14 18 18 F 1.35104 * 120.02786 * 179.97438 * 17 16 15 19 19 C 1.38465 * 119.94675 * 0.24873 * 17 16 15 20 20 C 1.38197 * 119.97511 * 359.47283 * 19 17 16 21 21 C 1.50699 * 109.46805 * 155.00280 * 12 11 9 22 22 C 1.38255 * 120.00091 * 39.99939 * 21 12 11 23 23 C 1.38218 * 119.99940 * 180.02562 * 22 21 12 24 24 C 1.38254 * 120.00318 * 359.95725 * 23 22 21 25 25 C 1.38222 * 119.99647 * 0.02562 * 24 23 22 26 26 C 1.50694 * 119.99651 * 180.02562 * 25 24 23 27 27 F 1.39904 * 109.47408 * 359.97438 * 26 25 24 28 28 F 1.39909 * 109.47102 * 119.99885 * 26 25 24 29 29 F 1.39897 * 109.47138 * 239.99850 * 26 25 24 30 30 C 1.38219 * 119.99769 * 219.72814 * 21 12 11 31 31 H 0.97003 * 120.00072 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00026 * 0.02562 * 11 9 7 33 33 H 1.08001 * 119.98900 * 0.02748 * 15 14 12 34 34 H 1.07996 * 120.01603 * 180.02562 * 16 15 14 35 35 H 1.08007 * 120.01049 * 179.72700 * 19 17 16 36 36 H 1.07994 * 119.98812 * 180.27364 * 20 19 17 37 37 H 1.07998 * 119.99924 * 359.97438 * 22 21 12 38 38 H 1.08003 * 119.99488 * 179.97438 * 23 22 21 39 39 H 1.07991 * 120.00543 * 180.02562 * 24 23 22 40 40 H 1.07993 * 120.00076 * 359.97438 * 30 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 0.0011 13 1 0.3057 -4.8103 -0.5881 14 6 0.8587 -5.2893 1.4167 15 6 -0.3790 -5.8391 1.6942 16 6 -0.7086 -6.1810 2.9920 17 6 0.2012 -5.9720 4.0146 18 9 -0.1201 -6.3053 5.2839 19 6 1.4383 -5.4159 3.7363 20 6 1.7679 -5.0802 2.4369 21 6 2.0804 -5.9954 -0.5994 22 6 3.4309 -6.0424 -0.3070 23 6 4.2233 -7.0317 -0.8582 24 6 3.6653 -7.9748 -1.7012 25 6 2.3151 -7.9279 -1.9933 26 6 1.7068 -8.9562 -2.9117 27 9 2.6990 -9.8453 -3.3387 28 9 0.7110 -9.6616 -2.2276 29 9 1.1458 -8.3161 -4.0220 30 6 1.5215 -6.9413 -1.4380 31 1 -0.4850 0.8401 -0.0004 32 1 2.9191 -3.6476 0.0009 33 1 -1.0886 -6.0016 0.8964 34 1 -1.6753 -6.6109 3.2085 35 1 2.1471 -5.2484 4.5339 36 1 2.7344 -4.6505 2.2190 37 1 3.8668 -5.3057 0.3515 38 1 5.2783 -7.0682 -0.6300 39 1 4.2843 -8.7480 -2.1316 40 1 0.4658 -6.9074 -1.6626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390834180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -183.710559 kcal Electronic energy + Delta-G solvation = -32497.259357 eV Core-core repulsion = 27355.174074 eV Total energy + Delta-G solvation = -5142.085283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.27775 -48.70627 -47.81228 -47.71936 -40.18334 -38.67061 -37.18629 -34.45438 -32.53117 -31.96286 -31.14236 -30.79088 -30.04470 -26.76751 -26.20181 -25.05286 -23.06637 -22.45567 -21.99870 -20.98256 -19.58045 -18.59224 -18.49359 -18.34578 -17.61050 -17.25422 -16.39522 -16.15108 -15.66562 -15.47672 -15.39906 -15.19849 -14.83726 -14.64529 -14.49360 -14.18486 -14.16099 -14.03773 -13.90063 -13.89587 -13.77657 -13.34770 -13.27916 -12.94266 -12.75919 -12.74459 -12.46312 -12.10203 -12.09164 -11.58648 -11.34551 -11.17569 -11.10697 -11.00132 -10.75008 -10.56017 -10.29882 -9.34602 -9.06873 -8.92966 -8.86327 -8.33675 -7.79511 -7.72325 -6.27581 -4.74047 0.80163 1.07456 1.40975 1.48406 2.53199 3.08936 3.16280 3.18921 3.33794 3.58220 3.79439 3.88509 4.03277 4.30777 4.46298 4.47238 4.50217 4.67045 4.75688 4.88219 4.98228 5.05171 5.05885 5.20110 5.28821 5.44604 5.53771 5.58858 5.69669 5.77426 5.90851 6.01072 6.08826 6.15205 6.22822 6.31880 6.36878 6.48331 6.61026 6.80253 7.11239 7.34741 7.71549 7.89219 8.19568 8.93711 9.34849 10.48925 10.66829 Molecular weight = 367.09amu Principal moments of inertia in cm(-1) A = 0.007413 B = 0.003468 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3776.074186 B = 8072.596649 C =10459.116951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.572 6.572 11 N -0.757 5.757 12 C 0.230 3.770 13 H 0.099 0.901 14 C -0.082 4.082 15 C -0.076 4.076 16 C -0.154 4.154 17 C 0.086 3.914 18 F -0.147 7.147 19 C -0.156 4.156 20 C -0.068 4.068 21 C -0.071 4.071 22 C -0.076 4.076 23 C -0.117 4.117 24 C -0.080 4.080 25 C -0.183 4.183 26 C 0.509 3.491 27 F -0.180 7.180 28 F -0.177 7.177 29 F -0.176 7.176 30 C -0.059 4.059 31 H 0.269 0.731 32 H 0.380 0.620 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -16.253 -0.483 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.454 6.454 11 N -0.412 5.412 12 C 0.124 3.876 13 H 0.117 0.883 14 C -0.084 4.084 15 C -0.095 4.095 16 C -0.173 4.173 17 C 0.067 3.933 18 F -0.126 7.126 19 C -0.174 4.174 20 C -0.086 4.086 21 C -0.072 4.072 22 C -0.095 4.095 23 C -0.135 4.135 24 C -0.098 4.098 25 C -0.184 4.184 26 C 0.455 3.545 27 F -0.161 7.161 28 F -0.158 7.158 29 F -0.157 7.157 30 C -0.077 4.077 31 H 0.080 0.920 32 H 0.214 0.786 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.890 -16.147 -0.473 17.195 hybrid contribution 0.697 0.644 0.122 0.957 sum 6.587 -15.503 -0.350 16.848 Atomic orbital electron populations 1.70004 1.07036 1.27413 1.34836 1.25680 0.94613 1.00265 0.92586 0.86385 0.80160 0.81443 0.78877 1.19709 1.20439 1.18901 1.20825 0.93546 0.89165 1.54482 0.91415 1.18244 0.87295 0.82115 0.76260 1.90618 1.13933 1.86374 1.54483 1.46386 1.08394 1.03741 1.82707 1.18253 0.95394 0.83142 0.90847 0.88272 1.20373 0.94051 0.97520 0.96420 1.20854 0.95972 0.96774 0.95861 1.21028 0.99688 1.04050 0.92546 1.17683 0.95148 1.01623 0.78829 1.91460 1.93185 1.90566 1.37371 1.21054 0.95961 1.02317 0.98107 1.20762 0.99800 0.96929 0.91151 1.20038 0.94527 0.96118 0.96509 1.21274 0.93171 0.97370 0.97647 1.21119 1.00348 0.94676 0.97365 1.20956 0.92968 0.98906 0.96941 1.19876 0.96112 0.98900 1.03526 1.18319 0.76081 0.80643 0.79453 1.93150 1.61649 1.70563 1.90761 1.93222 1.62799 1.80284 1.79544 1.93230 1.85824 1.81559 1.55105 1.20742 1.00069 0.92377 0.94533 0.92006 0.78648 0.85169 0.85106 0.85155 0.85308 0.84872 0.84750 0.84689 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.06 11.83 55.55 0.66 -21.41 16 2 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.54 -14.37 9.54 -35.64 -0.34 -14.71 16 8 H 0.07 1.63 7.85 -52.48 -0.41 1.22 16 9 C 0.56 14.49 7.70 -12.99 -0.10 14.39 16 10 O -0.57 -17.21 14.68 5.20 0.08 -17.13 16 11 N -0.76 -14.77 4.26 -57.49 -0.24 -15.02 16 12 C 0.23 3.87 2.38 -70.24 -0.17 3.71 16 13 H 0.10 1.88 7.30 -51.93 -0.38 1.50 16 14 C -0.08 -1.33 4.90 -104.62 -0.51 -1.85 16 15 C -0.08 -1.18 9.67 -39.59 -0.38 -1.56 16 16 C -0.15 -2.26 10.03 -39.52 -0.40 -2.66 16 17 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 18 F -0.15 -2.22 17.27 2.25 0.04 -2.18 16 19 C -0.16 -2.28 10.03 -39.51 -0.40 -2.67 16 20 C -0.07 -1.04 9.12 -39.59 -0.36 -1.40 16 21 C -0.07 -0.96 4.94 -104.62 -0.52 -1.47 16 22 C -0.08 -0.86 8.85 -39.58 -0.35 -1.21 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 24 C -0.08 -0.79 9.43 -39.58 -0.37 -1.17 16 25 C -0.18 -2.11 5.37 -104.62 -0.56 -2.67 16 26 C 0.51 5.79 3.32 36.00 0.12 5.91 16 27 F -0.18 -1.94 15.97 2.25 0.04 -1.90 16 28 F -0.18 -2.09 17.23 2.25 0.04 -2.05 16 29 F -0.18 -2.17 17.24 2.25 0.04 -2.13 16 30 C -0.06 -0.74 9.22 -39.58 -0.37 -1.10 16 31 H 0.27 7.09 8.29 -40.82 -0.34 6.76 16 32 H 0.38 6.38 6.85 -40.82 -0.28 6.10 16 33 H 0.13 1.80 8.04 -52.49 -0.42 1.38 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.13 1.78 7.26 -52.49 -0.38 1.40 16 37 H 0.13 1.35 6.46 -52.49 -0.34 1.01 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.14 1.08 7.16 -52.49 -0.38 0.71 16 40 H 0.13 1.59 8.04 -52.49 -0.42 1.17 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -32.61 368.11 -7.73 -40.35 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.41 Total: 8.25 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -5.48 Total: -6.68 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.41 Total: -36.43 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.08 Total: -17.13 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 0.15 Total: -8.26 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.61 -7.73 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390834180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.363 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds