Wall clock time and date at job start Tue Mar 31 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21256 * 119.99661 * 2 1 4 4 C 1.47180 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.39879 * 120.14705 * 0.29101 * 4 2 1 6 6 C 1.37889 * 119.93325 * 180.27523 * 5 4 2 7 7 C 1.38327 * 120.23898 * 359.45347 * 6 5 4 8 8 C 1.38851 * 120.29513 * 0.25481 * 7 6 5 9 9 O 1.35913 * 119.97538 * 180.02562 * 8 7 6 10 10 C 1.42895 * 116.99665 * 5.49942 * 9 8 7 11 11 H 1.09004 * 109.47232 * 35.76093 * 10 9 8 12 12 C 1.53004 * 109.47372 * 275.76140 * 10 9 8 13 13 C 1.50699 * 109.47100 * 155.75899 * 10 9 8 14 14 O 1.21279 * 120.00044 * 5.00077 * 13 10 9 15 15 N 1.34784 * 120.00139 * 185.00424 * 13 10 9 16 16 C 1.46494 * 120.00028 * 180.02562 * 15 13 10 17 17 H 1.09004 * 109.47286 * 324.99911 * 16 15 13 18 18 C 1.50701 * 109.47417 * 84.99465 * 16 15 13 19 19 H 1.07996 * 120.00039 * 35.17586 * 18 16 15 20 20 C 1.37881 * 120.00299 * 215.17930 * 18 16 15 21 21 N 1.31518 * 119.99607 * 5.60005 * 20 18 16 22 22 Si 1.86800 * 120.00222 * 185.59840 * 20 18 16 23 23 H 1.48503 * 109.47150 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47097 * 120.00131 * 22 20 18 25 25 H 1.48503 * 109.47023 * 239.99991 * 22 20 18 26 26 C 1.50700 * 109.47127 * 204.99473 * 16 15 13 27 27 C 1.38232 * 120.00167 * 311.43487 * 26 16 15 28 28 C 1.38236 * 120.00029 * 179.81276 * 27 26 16 29 29 C 1.38231 * 119.99982 * 0.38613 * 28 27 26 30 30 C 1.38237 * 119.99803 * 359.86824 * 29 28 27 31 31 C 1.38231 * 120.00434 * 359.94661 * 30 29 28 32 32 C 1.38433 * 120.05710 * 0.02562 * 8 7 6 33 33 H 1.09000 * 109.46705 * 240.00181 * 1 2 3 34 34 H 1.09001 * 109.46900 * 359.97438 * 1 2 3 35 35 H 1.08998 * 109.46974 * 120.00348 * 1 2 3 36 36 H 1.08002 * 120.03039 * 0.02562 * 5 4 2 37 37 H 1.08004 * 119.87966 * 179.73083 * 6 5 4 38 38 H 1.07998 * 119.85322 * 180.28178 * 7 6 5 39 39 H 1.09004 * 109.47121 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46536 * 299.99503 * 12 10 9 41 41 H 1.08990 * 109.47159 * 59.99801 * 12 10 9 42 42 H 0.96995 * 120.00079 * 359.97438 * 15 13 10 43 43 H 0.96995 * 119.99665 * 179.97438 * 21 20 18 44 44 H 1.08007 * 119.99812 * 359.97438 * 27 26 16 45 45 H 1.07999 * 119.99760 * 180.23318 * 28 27 26 46 46 H 1.07994 * 119.99917 * 179.83208 * 29 28 27 47 47 H 1.08008 * 119.99779 * 179.97438 * 30 29 28 48 48 H 1.07999 * 120.00475 * 180.02562 * 31 30 29 49 49 H 1.07993 * 120.11904 * 179.97438 * 32 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4878 -0.0050 6 6 2.2404 -3.6794 0.0013 7 6 3.6237 -3.6801 0.0017 8 6 4.3248 -2.4816 0.0012 9 8 5.6839 -2.4898 0.0011 10 6 6.3248 -3.7612 -0.1204 11 1 5.7427 -4.3995 -0.7853 12 6 6.4234 -4.4166 1.2586 13 6 7.7083 -3.5741 -0.6878 14 8 8.1404 -2.4567 -0.8763 15 7 8.4655 -4.6486 -0.9859 16 6 9.8106 -4.4667 -1.5369 17 1 9.8217 -3.5919 -2.1871 18 6 10.7921 -4.2678 -0.4108 19 1 10.6568 -4.7937 0.5227 20 6 11.8630 -3.4144 -0.5722 21 7 11.9681 -2.6908 -1.6654 22 14 13.1644 -3.2860 0.7617 23 1 12.8165 -4.1966 1.8820 24 1 14.4856 -3.6702 0.2028 25 1 13.2254 -1.8888 1.2608 26 6 10.1976 -5.6877 -2.3308 27 6 10.0279 -6.9476 -1.7879 28 6 10.3793 -8.0678 -2.5176 29 6 10.9078 -7.9278 -3.7872 30 6 11.0824 -6.6677 -4.3281 31 6 10.7275 -5.5476 -3.5999 32 6 3.6406 -1.2781 0.0007 33 1 -0.3633 -0.5138 0.8900 34 1 -0.3633 1.0277 0.0005 35 1 -0.3633 -0.5139 -0.8899 36 1 0.4666 -2.4911 -0.0102 37 1 1.7019 -4.6156 0.0013 38 1 4.1608 -4.6170 0.0021 39 1 6.9127 -5.3862 1.1659 40 1 7.0055 -3.7783 1.9233 41 1 5.4228 -4.5519 1.6689 42 1 8.1200 -5.5423 -0.8349 43 1 12.7213 -2.0902 -1.7788 44 1 9.6183 -7.0568 -0.7945 45 1 10.2431 -9.0522 -2.0949 46 1 11.1848 -8.8028 -4.3563 47 1 11.4958 -6.5583 -5.3199 48 1 10.8635 -4.5632 -4.0226 49 1 4.1848 -0.3453 0.0007 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408513989.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:52 Heat of formation + Delta-G solvation = -56.782939 kcal Electronic energy + Delta-G solvation = -31986.475057 eV Core-core repulsion = 27651.043909 eV Total energy + Delta-G solvation = -4335.431148 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69402 -39.65837 -38.88473 -38.11722 -36.98861 -34.48791 -32.75096 -31.93955 -31.92390 -30.67378 -30.21763 -29.92490 -29.14280 -26.73367 -24.75315 -24.02891 -23.08134 -22.46851 -21.92204 -20.69304 -19.96112 -19.33944 -18.20271 -17.35478 -16.67188 -16.40565 -16.10819 -15.94393 -15.60015 -15.32436 -15.20159 -15.08261 -14.68174 -14.49020 -14.15146 -13.98516 -13.93084 -13.68928 -13.26294 -13.12951 -12.72972 -12.71090 -12.65322 -12.54043 -12.44100 -12.25835 -12.05195 -11.95109 -11.77919 -11.57993 -11.17380 -11.05030 -11.00969 -10.91210 -10.45365 -10.38824 -10.04075 -9.94896 -9.80076 -9.27526 -8.97639 -8.62992 -8.36753 -8.24495 -8.14326 -7.78449 -6.13642 -4.20850 0.40149 1.20596 2.07859 2.10603 2.17552 2.86479 3.25635 3.32438 3.34777 3.38791 3.57347 3.79407 4.13402 4.34049 4.51330 4.58016 4.64360 4.68665 4.84974 4.88152 4.96631 5.03994 5.05332 5.14841 5.19448 5.27247 5.33523 5.49784 5.53282 5.55726 5.63882 5.66183 5.67375 5.72943 6.00165 6.02847 6.07858 6.12165 6.14255 6.21746 6.31692 6.43210 6.64401 6.74339 7.11037 7.13808 7.18770 7.26579 7.31995 7.46088 7.62383 7.72085 7.83488 8.06951 8.35784 8.86755 9.11235 9.43891 10.90984 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.002252 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.449601 B =12429.559514 C =13759.262272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.394 3.606 3 O -0.452 6.452 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.184 4.184 8 C 0.129 3.871 9 O -0.278 6.278 10 C 0.063 3.937 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.511 3.489 14 O -0.505 6.505 15 N -0.711 5.711 16 C 0.287 3.713 17 H 0.090 0.910 18 C -0.517 4.517 19 H 0.060 0.940 20 C 0.076 3.924 21 N -0.870 5.870 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.039 4.039 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.149 4.149 30 C -0.124 4.124 31 C -0.108 4.108 32 C -0.094 4.094 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.378 0.622 43 H 0.265 0.735 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.122 0.878 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.525 -7.695 1.503 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.271 3.729 3 O -0.327 6.327 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.203 4.203 8 C 0.082 3.918 9 O -0.190 6.190 10 C 0.003 3.997 11 H 0.108 0.892 12 C -0.231 4.231 13 C 0.292 3.708 14 O -0.378 6.378 15 N -0.363 5.363 16 C 0.186 3.814 17 H 0.108 0.892 18 C -0.555 4.555 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.505 5.505 22 Si 0.723 3.277 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.040 4.040 27 C -0.142 4.142 28 C -0.146 4.146 29 C -0.168 4.168 30 C -0.142 4.142 31 C -0.127 4.127 32 C -0.112 4.112 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.210 0.790 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.140 0.860 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.597 -5.973 1.273 20.527 hybrid contribution 0.739 -0.854 0.825 1.399 sum -18.858 -6.827 2.098 20.165 Atomic orbital electron populations 1.22233 0.93473 1.05165 1.04570 1.22524 0.91704 0.87478 0.71181 1.90574 1.72192 1.34256 1.35634 1.20270 0.93302 0.95042 1.05081 1.21263 0.99966 0.91289 1.01158 1.20892 0.93307 0.98239 0.98571 1.21625 0.95552 0.97584 1.05520 1.19019 0.83303 0.93786 0.95648 1.86309 1.15027 1.30823 1.86830 1.22443 0.94268 0.84320 0.98652 0.89209 1.22308 1.03231 1.01782 0.95791 1.19618 0.85145 0.86150 0.79843 1.90773 1.72238 1.23721 1.51083 1.46558 1.17859 1.06727 1.65118 1.17969 0.77357 0.92273 0.93757 0.89240 1.21155 1.08958 1.26411 0.99009 0.92212 1.24961 0.98238 0.94020 0.95822 1.69891 1.29977 1.24171 1.26494 0.86476 0.81309 0.78094 0.81775 1.19645 1.20784 1.20741 1.20696 0.95085 0.95537 0.92730 1.20870 1.01927 0.92283 0.99135 1.20958 1.00658 0.97910 0.95074 1.20864 1.02840 0.96764 0.96308 1.21035 1.00786 0.92883 0.99527 1.21084 0.98901 0.98481 0.94211 1.20718 0.92754 0.97383 1.00381 0.88769 0.89681 0.88740 0.85033 0.85123 0.84631 0.90118 0.90383 0.91402 0.78955 0.92469 0.87023 0.87336 0.87451 0.87192 0.86036 0.83910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 8.93 36.01 0.32 -0.82 16 2 C 0.39 4.14 7.23 -30.67 -0.22 3.92 16 3 O -0.45 -6.58 17.08 5.58 0.10 -6.49 16 4 C -0.14 -1.48 5.87 -105.08 -0.62 -2.10 16 5 C -0.12 -0.95 9.47 -39.10 -0.37 -1.32 16 6 C -0.09 -0.75 10.02 -39.68 -0.40 -1.15 16 7 C -0.18 -1.92 8.21 -39.32 -0.32 -2.25 16 8 C 0.13 1.79 6.58 -39.28 -0.26 1.53 16 9 O -0.28 -4.74 9.34 -39.33 -0.37 -5.11 16 10 C 0.06 0.95 2.64 -27.88 -0.07 0.88 16 11 H 0.09 1.07 6.35 -51.93 -0.33 0.74 16 12 C -0.17 -2.13 9.10 37.16 0.34 -1.79 16 13 C 0.51 10.47 7.14 -10.98 -0.08 10.40 16 14 O -0.50 -13.32 16.17 -14.30 -0.23 -13.55 16 15 N -0.71 -13.84 4.98 -56.07 -0.28 -14.12 16 16 C 0.29 6.76 2.32 -70.24 -0.16 6.60 16 17 H 0.09 2.50 6.45 -51.93 -0.33 2.16 16 18 C -0.52 -13.57 8.46 -34.44 -0.29 -13.86 16 19 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 20 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 21 N -0.87 -24.79 12.76 55.43 0.71 -24.08 16 22 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 C -0.04 -0.82 4.93 -104.62 -0.52 -1.33 16 27 C -0.12 -2.22 8.87 -39.58 -0.35 -2.57 16 28 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 29 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 30 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 31 C -0.11 -2.20 9.67 -39.58 -0.38 -2.58 16 32 C -0.09 -1.29 9.54 -38.94 -0.37 -1.66 16 33 H 0.09 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.13 0.61 7.05 -52.49 -0.37 0.24 16 37 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.14 1.18 5.37 -52.49 -0.28 0.89 16 39 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.67 6.82 -51.93 -0.35 0.31 16 42 H 0.38 5.86 7.18 -40.82 -0.29 5.57 16 43 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.11 1.82 7.46 -52.48 -0.39 1.43 16 45 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 48 H 0.12 2.60 7.98 -52.49 -0.42 2.19 16 49 H 0.14 2.18 7.65 -52.49 -0.40 1.78 16 LS Contribution 416.78 15.07 6.28 6.28 Total: -1.00 -34.95 416.78 -10.37 -45.32 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.51 Total: 9.27 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -5.05 Total: -13.87 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.43 Total: -38.20 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.50 Total: -25.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.95 -10.37 -45.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408513989.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds