Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21254 * 120.00573 * 2 1 4 4 C 1.47184 * 119.99557 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14848 * 0.24574 * 4 2 1 6 6 C 1.37891 * 119.93827 * 180.27393 * 5 4 2 7 7 C 1.38337 * 120.23490 * 359.47627 * 6 5 4 8 8 C 1.38848 * 120.29214 * 0.27697 * 7 6 5 9 9 O 1.35914 * 119.97010 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99927 * 5.78856 * 9 8 7 11 11 H 1.09007 * 109.46884 * 31.52790 * 10 9 8 12 12 C 1.52996 * 109.47241 * 271.52875 * 10 9 8 13 13 C 1.50701 * 109.47319 * 151.52478 * 10 9 8 14 14 O 1.21281 * 119.99784 * 5.00538 * 13 10 9 15 15 N 1.34778 * 120.00003 * 184.99816 * 13 10 9 16 16 C 1.46504 * 119.99864 * 180.02562 * 15 13 10 17 17 H 1.09007 * 109.46673 * 34.99988 * 16 15 13 18 18 C 1.50696 * 109.47160 * 275.00357 * 16 15 13 19 19 H 1.08000 * 119.99959 * 328.92054 * 18 16 15 20 20 C 1.37874 * 120.00091 * 148.91699 * 18 16 15 21 21 N 1.31519 * 120.00464 * 178.33506 * 20 18 16 22 22 Si 1.86805 * 120.00039 * 358.33432 * 20 18 16 23 23 H 1.48500 * 109.46863 * 87.65894 * 22 20 18 24 24 H 1.48500 * 109.47308 * 207.66085 * 22 20 18 25 25 H 1.48496 * 109.46997 * 327.66282 * 22 20 18 26 26 C 1.50694 * 109.46892 * 155.00211 * 16 15 13 27 27 C 1.38233 * 120.00162 * 47.19160 * 26 16 15 28 28 C 1.38233 * 119.99833 * 179.78733 * 27 26 16 29 29 C 1.38237 * 120.00220 * 0.44223 * 28 27 26 30 30 C 1.38232 * 119.99972 * 359.81255 * 29 28 27 31 31 C 1.38237 * 119.99774 * 227.46467 * 26 16 15 32 32 C 1.38425 * 120.05987 * 359.97438 * 8 7 6 33 33 H 1.09001 * 109.47004 * 270.00530 * 1 2 3 34 34 H 1.09002 * 109.46849 * 29.99711 * 1 2 3 35 35 H 1.08994 * 109.47221 * 150.00414 * 1 2 3 36 36 H 1.08000 * 120.03499 * 0.03433 * 5 4 2 37 37 H 1.08000 * 119.88170 * 179.75895 * 6 5 4 38 38 H 1.07995 * 119.85120 * 180.29670 * 7 6 5 39 39 H 1.09002 * 109.46968 * 300.00232 * 12 10 9 40 40 H 1.09000 * 109.47545 * 59.99880 * 12 10 9 41 41 H 1.09005 * 109.47393 * 179.97438 * 12 10 9 42 42 H 0.96993 * 120.00125 * 0.02562 * 15 13 10 43 43 H 0.96993 * 120.00110 * 179.97438 * 21 20 18 44 44 H 1.07999 * 120.00107 * 359.97438 * 27 26 16 45 45 H 1.07998 * 119.99854 * 180.27826 * 28 27 26 46 46 H 1.07997 * 120.00099 * 179.83932 * 29 28 27 47 47 H 1.07998 * 120.00138 * 180.02562 * 30 29 28 48 48 H 1.08000 * 119.99943 * 359.97438 * 31 26 16 49 49 H 1.07999 * 120.11340 * 179.97438 * 32 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 -0.0041 6 6 2.2402 -3.6795 0.0022 7 6 3.6236 -3.6802 0.0021 8 6 4.3246 -2.4817 0.0016 9 8 5.6837 -2.4901 0.0021 10 6 6.3247 -3.7609 -0.1253 11 1 5.7052 -4.4210 -0.7325 12 6 6.5177 -4.3761 1.2622 13 6 7.6669 -3.5825 -0.7868 14 8 8.0777 -2.4686 -1.0344 15 7 8.4109 -4.6609 -1.1033 16 6 9.7160 -4.4875 -1.7459 17 1 10.1938 -3.5866 -1.3606 18 6 9.5292 -4.3590 -3.2357 19 1 8.7111 -4.8682 -3.7233 20 6 10.4027 -3.5912 -3.9763 21 7 10.2593 -3.5054 -5.2808 22 14 11.7900 -2.6728 -3.1269 23 1 12.9759 -3.5598 -3.0162 24 1 12.1449 -1.4685 -3.9199 25 1 11.3521 -2.2602 -1.7693 26 6 10.5845 -5.6828 -1.4497 27 6 10.0775 -6.9599 -1.6007 28 6 10.8757 -8.0564 -1.3332 29 6 12.1779 -7.8758 -0.9060 30 6 12.6832 -6.5986 -0.7500 31 6 11.8864 -5.5021 -1.0217 32 6 3.6405 -1.2783 0.0005 33 1 -0.3633 0.0001 1.0277 34 1 -0.3633 0.8900 -0.5138 35 1 -0.3633 -0.8900 -0.5137 36 1 0.4665 -2.4912 -0.0087 37 1 1.7016 -4.6156 0.0025 38 1 4.1606 -4.6172 0.0022 39 1 7.1371 -3.7159 1.8694 40 1 5.5469 -4.5052 1.7407 41 1 7.0062 -5.3457 1.1651 42 1 8.0823 -5.5518 -0.9055 43 1 10.8736 -2.9650 -5.8018 44 1 9.0589 -7.1011 -1.9304 45 1 10.4810 -9.0543 -1.4554 46 1 12.8006 -8.7324 -0.6945 47 1 13.7007 -6.4575 -0.4166 48 1 12.2813 -4.5042 -0.8999 49 1 4.1849 -0.3456 0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408513990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -50.388839 kcal Electronic energy + Delta-G solvation = -32104.566837 eV Core-core repulsion = 27769.412958 eV Total energy + Delta-G solvation = -4335.153879 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72879 -39.73330 -39.06526 -38.26325 -37.05300 -34.66680 -32.82301 -32.06745 -31.93857 -30.84900 -30.43217 -30.08109 -29.11906 -27.20951 -24.88578 -24.00382 -22.93753 -22.50148 -22.18624 -20.80374 -19.94982 -19.45424 -18.26059 -17.47411 -17.14271 -16.47780 -16.17747 -16.02575 -15.68472 -15.39016 -15.30252 -15.12877 -14.75131 -14.67975 -14.34634 -14.06059 -13.94197 -13.62300 -13.26736 -13.26387 -12.97627 -12.73630 -12.71121 -12.66565 -12.53677 -12.41624 -12.29298 -12.07402 -11.95514 -11.78521 -11.26669 -11.21456 -11.00252 -10.92719 -10.67455 -10.51616 -10.03126 -9.80775 -9.74006 -9.28221 -9.16415 -8.73466 -8.43367 -8.40961 -8.32086 -7.89555 -6.22879 -4.24714 0.39776 1.20079 1.88918 1.91248 2.17462 2.79158 3.20224 3.24777 3.33779 3.36812 3.56986 3.75398 4.00833 4.31703 4.36531 4.51592 4.62571 4.64698 4.77372 4.85281 4.93135 4.97006 5.03556 5.07799 5.14804 5.20989 5.31670 5.36422 5.37481 5.44854 5.51564 5.53357 5.63090 5.70754 5.74682 5.94095 6.02969 6.03168 6.07141 6.09785 6.11042 6.37838 6.42127 6.51687 6.66124 6.95019 6.95833 7.14504 7.24891 7.27210 7.36791 7.40212 7.54007 8.15778 8.31363 8.78009 8.91264 9.37247 10.88659 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012944 B = 0.002291 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.694122 B =12220.122127 C =13461.597598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.453 6.453 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.091 4.091 7 C -0.183 4.183 8 C 0.128 3.872 9 O -0.279 6.279 10 C 0.063 3.937 11 H 0.096 0.904 12 C -0.172 4.172 13 C 0.513 3.487 14 O -0.512 6.512 15 N -0.705 5.705 16 C 0.263 3.737 17 H 0.069 0.931 18 C -0.513 4.513 19 H 0.080 0.920 20 C 0.086 3.914 21 N -0.884 5.884 22 Si 0.863 3.137 23 H -0.269 1.269 24 H -0.284 1.284 25 H -0.254 1.254 26 C -0.049 4.049 27 C -0.113 4.113 28 C -0.120 4.120 29 C -0.145 4.145 30 C -0.117 4.117 31 C -0.129 4.129 32 C -0.092 4.092 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.384 0.616 43 H 0.268 0.732 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 -6.543 14.056 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.272 3.728 3 O -0.328 6.328 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.202 4.202 8 C 0.082 3.918 9 O -0.191 6.191 10 C 0.003 3.997 11 H 0.114 0.886 12 C -0.230 4.230 13 C 0.296 3.704 14 O -0.386 6.386 15 N -0.357 5.357 16 C 0.161 3.839 17 H 0.086 0.914 18 C -0.550 4.550 19 H 0.098 0.902 20 C -0.120 4.120 21 N -0.520 5.520 22 Si 0.690 3.310 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.179 1.179 26 C -0.050 4.050 27 C -0.132 4.132 28 C -0.138 4.138 29 C -0.163 4.163 30 C -0.135 4.135 31 C -0.148 4.148 32 C -0.111 4.111 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.218 0.782 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.439 -4.890 13.688 20.488 hybrid contribution 0.611 -0.406 0.077 0.738 sum -13.827 -5.296 13.766 20.217 Atomic orbital electron populations 1.22223 0.93491 1.05040 1.04775 1.22513 0.91702 0.87472 0.71105 1.90570 1.72128 1.34295 1.35771 1.20279 0.93293 0.95085 1.05019 1.21311 1.00038 0.91294 1.00979 1.20899 0.93283 0.98278 0.98486 1.21601 0.95588 0.97536 1.05441 1.18994 0.83136 0.93839 0.95848 1.86282 1.15243 1.30690 1.86851 1.22401 0.94230 0.84820 0.98266 0.88602 1.22289 1.03506 1.01799 0.95362 1.19712 0.85214 0.85835 0.79647 1.90737 1.71170 1.24282 1.52400 1.46249 1.20857 1.07273 1.61284 1.18275 0.79158 0.92393 0.94032 0.91373 1.21041 1.14413 1.30799 0.88765 0.90228 1.24912 0.97237 0.95102 0.94702 1.69863 1.37444 1.39276 1.05371 0.87062 0.82638 0.80306 0.80989 1.19398 1.21008 1.17864 1.20663 0.95304 0.96078 0.92953 1.20835 0.99982 0.91949 1.00425 1.21027 0.94391 0.98242 1.00152 1.20909 0.95962 0.96577 1.02857 1.20987 0.99067 0.92798 1.00679 1.20983 0.94469 0.98523 1.00807 1.20704 0.92766 0.97334 1.00311 0.88409 0.89339 0.89366 0.84889 0.85052 0.84635 0.90622 0.91151 0.90091 0.78242 0.92200 0.86524 0.86854 0.87025 0.86891 0.87094 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 9.76 36.01 0.35 -0.83 16 2 C 0.39 4.22 7.23 -30.68 -0.22 3.99 16 3 O -0.45 -6.64 17.09 5.58 0.10 -6.55 16 4 C -0.14 -1.51 5.87 -105.08 -0.62 -2.12 16 5 C -0.12 -0.98 9.36 -39.10 -0.37 -1.34 16 6 C -0.09 -0.77 10.02 -39.67 -0.40 -1.16 16 7 C -0.18 -1.93 8.41 -39.32 -0.33 -2.26 16 8 C 0.13 1.77 6.63 -39.29 -0.26 1.51 16 9 O -0.28 -4.64 9.32 -39.33 -0.37 -5.01 16 10 C 0.06 0.91 2.62 -27.88 -0.07 0.84 16 11 H 0.10 1.16 6.09 -51.93 -0.32 0.84 16 12 C -0.17 -1.85 9.22 37.16 0.34 -1.51 16 13 C 0.51 10.18 7.14 -10.98 -0.08 10.10 16 14 O -0.51 -12.98 16.17 -14.30 -0.23 -13.21 16 15 N -0.71 -13.25 4.98 -56.07 -0.28 -13.53 16 16 C 0.26 5.98 1.81 -70.24 -0.13 5.85 16 17 H 0.07 1.72 4.36 -51.93 -0.23 1.49 16 18 C -0.51 -13.94 9.04 -34.44 -0.31 -14.25 16 19 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 20 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 21 N -0.88 -26.81 13.96 55.43 0.77 -26.04 16 22 Si 0.86 21.77 25.21 -169.99 -4.29 17.49 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.25 -6.35 6.07 56.52 0.34 -6.01 16 26 C -0.05 -0.97 4.84 -104.63 -0.51 -1.48 16 27 C -0.11 -1.96 8.90 -39.58 -0.35 -2.31 16 28 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 29 C -0.14 -2.14 10.05 -39.58 -0.40 -2.54 16 30 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 31 C -0.13 -2.48 8.82 -39.58 -0.35 -2.83 16 32 C -0.09 -1.28 9.54 -38.94 -0.37 -1.65 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.34 6.46 -51.93 -0.34 0.01 16 36 H 0.13 0.65 6.35 -52.49 -0.33 0.31 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.17 5.54 -52.49 -0.29 0.88 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.61 7.29 -51.93 -0.38 0.23 16 41 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 42 H 0.38 5.66 7.09 -40.82 -0.29 5.37 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.12 1.84 7.37 -52.49 -0.39 1.45 16 45 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.11 2.16 6.50 -52.49 -0.34 1.81 16 49 H 0.14 2.17 7.65 -52.49 -0.40 1.77 16 LS Contribution 407.47 15.07 6.14 6.14 Total: -1.00 -36.71 407.47 -9.40 -46.11 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.29 Total: 8.72 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -4.96 Total: -14.13 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.49 Total: -39.57 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.50 Total: -24.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.29 Total: 17.49 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.71 -9.40 -46.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408513990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.284 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds