Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21250 * 120.00390 * 2 1 4 4 C 1.47180 * 119.99778 * 180.02562 * 2 1 3 5 5 C 1.39880 * 120.14556 * 359.71993 * 4 2 1 6 6 C 1.37886 * 119.93974 * 180.25528 * 5 4 2 7 7 C 1.38332 * 120.23594 * 0.02562 * 6 5 4 8 8 C 1.38848 * 120.29284 * 0.02562 * 7 6 5 9 9 O 1.35916 * 119.97479 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99710 * 354.80429 * 9 8 7 11 11 H 1.09004 * 109.46931 * 324.24688 * 10 9 8 12 12 C 1.53002 * 109.47317 * 84.24227 * 10 9 8 13 13 C 1.50694 * 109.47128 * 204.24315 * 10 9 8 14 14 O 1.21285 * 120.00386 * 359.97438 * 13 10 9 15 15 N 1.34782 * 120.00134 * 179.97438 * 13 10 9 16 16 C 1.46497 * 120.00164 * 179.97438 * 15 13 10 17 17 H 1.09006 * 109.46978 * 35.00069 * 16 15 13 18 18 C 1.50698 * 109.47374 * 275.00225 * 16 15 13 19 19 H 1.08000 * 119.99498 * 327.05050 * 18 16 15 20 20 C 1.37871 * 120.00342 * 147.05178 * 18 16 15 21 21 N 1.31514 * 120.00420 * 185.78970 * 20 18 16 22 22 Si 1.86807 * 119.99942 * 5.78932 * 20 18 16 23 23 H 1.48499 * 109.47019 * 90.81616 * 22 20 18 24 24 H 1.48498 * 109.47030 * 210.81523 * 22 20 18 25 25 H 1.48503 * 109.46738 * 330.81679 * 22 20 18 26 26 C 1.50698 * 109.47211 * 154.99936 * 16 15 13 27 27 C 1.38239 * 120.00000 * 45.48432 * 26 16 15 28 28 C 1.38232 * 119.99969 * 179.78930 * 27 26 16 29 29 C 1.38229 * 120.00241 * 0.44365 * 28 27 26 30 30 C 1.38241 * 119.99909 * 359.81107 * 29 28 27 31 31 C 1.38232 * 119.99805 * 359.97438 * 30 29 28 32 32 C 1.38424 * 120.06180 * 359.97438 * 8 7 6 33 33 H 1.09000 * 109.46974 * 239.99806 * 1 2 3 34 34 H 1.08998 * 109.46608 * 359.97438 * 1 2 3 35 35 H 1.08997 * 109.47461 * 119.99357 * 1 2 3 36 36 H 1.08004 * 120.02830 * 0.27646 * 5 4 2 37 37 H 1.07997 * 119.88834 * 180.02562 * 6 5 4 38 38 H 1.08002 * 119.85638 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.47051 * 59.99629 * 12 10 9 40 40 H 1.08998 * 109.47462 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.46852 * 300.00243 * 12 10 9 42 42 H 0.96999 * 119.99885 * 359.97438 * 15 13 10 43 43 H 0.96992 * 120.00334 * 179.97438 * 21 20 18 44 44 H 1.07996 * 119.99806 * 0.02562 * 27 26 16 45 45 H 1.08005 * 120.00094 * 180.27807 * 28 27 26 46 46 H 1.07998 * 120.00481 * 179.83636 * 29 28 27 47 47 H 1.08002 * 120.00131 * 180.02562 * 30 29 28 48 48 H 1.08001 * 119.99965 * 180.02562 * 31 30 29 49 49 H 1.07996 * 120.12049 * 180.02562 * 32 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5465 -2.4878 0.0048 6 6 2.2402 -3.6794 0.0096 7 6 3.6235 -3.6802 0.0096 8 6 4.3245 -2.4817 0.0054 9 8 5.6837 -2.4900 0.0059 10 6 6.3246 -3.7616 0.1263 11 1 5.7422 -4.4006 0.7901 12 6 6.4238 -4.4154 -1.2534 13 6 7.7078 -3.5751 0.6944 14 8 8.1059 -2.4628 0.9688 15 7 8.5027 -4.6445 0.8977 16 6 9.8476 -4.4632 1.4494 17 1 9.8380 -3.6438 2.1682 18 6 10.8090 -4.1419 0.3343 19 1 10.6590 -4.5669 -0.6471 20 6 11.8801 -3.3055 0.5670 21 7 12.6531 -2.9340 -0.4300 22 14 12.2333 -2.7000 2.2986 23 1 13.1631 -3.6417 2.9722 24 1 12.8539 -1.3524 2.2347 25 1 10.9637 -2.6246 3.0651 26 6 10.2830 -5.7307 2.1385 27 6 10.0892 -6.9534 1.5233 28 6 10.4925 -8.1158 2.1535 29 6 11.0813 -8.0563 3.4027 30 6 11.2703 -6.8340 4.0202 31 6 10.8710 -5.6713 3.3881 32 6 3.6405 -1.2783 0.0005 33 1 -0.3633 -0.5139 0.8900 34 1 -0.3632 1.0277 0.0005 35 1 -0.3634 -0.5137 -0.8900 36 1 0.4665 -2.4910 0.0049 37 1 1.7017 -4.6156 0.0133 38 1 4.1606 -4.6172 0.0138 39 1 7.0061 -3.7764 -1.9173 40 1 6.9122 -5.3855 -1.1616 41 1 5.4232 -4.5502 -1.6643 42 1 8.1842 -5.5341 0.6786 43 1 13.4064 -2.3453 -0.2663 44 1 9.6261 -7.0002 0.5488 45 1 10.3451 -9.0708 1.6709 46 1 11.3940 -8.9646 3.8962 47 1 11.7307 -6.7874 4.9960 48 1 11.0191 -4.7163 3.8703 49 1 4.1848 -0.3455 -0.0032 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408513991.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = -50.517178 kcal Electronic energy + Delta-G solvation = -32088.204382 eV Core-core repulsion = 27753.044938 eV Total energy + Delta-G solvation = -4335.159444 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.74827 -39.74569 -39.08223 -38.27129 -37.06551 -34.66862 -32.82156 -32.05642 -31.95397 -30.86548 -30.44068 -30.04361 -29.17422 -27.20629 -24.82012 -24.03611 -22.96395 -22.51332 -22.20001 -20.80978 -19.96975 -19.43139 -18.25640 -17.49407 -17.15499 -16.45432 -16.19541 -16.04519 -15.70357 -15.40077 -15.31345 -15.11108 -14.80714 -14.69637 -14.29352 -13.98254 -13.97707 -13.79744 -13.33590 -13.11005 -12.95810 -12.72737 -12.67712 -12.67209 -12.57982 -12.42372 -12.32114 -12.00398 -11.96265 -11.80021 -11.34167 -11.17126 -11.01181 -10.91662 -10.72416 -10.51579 -10.06531 -9.75691 -9.74586 -9.31184 -9.16122 -8.72862 -8.43951 -8.41931 -8.35745 -7.87174 -6.23331 -4.24353 0.37167 1.17304 1.87633 1.90515 2.14786 2.77224 3.21681 3.24992 3.31255 3.33960 3.53918 3.74068 4.01098 4.30879 4.35857 4.48695 4.60448 4.64116 4.80084 4.85609 4.93227 4.94639 5.03169 5.03477 5.13752 5.18942 5.28781 5.35207 5.36608 5.49281 5.50928 5.59766 5.62631 5.69471 5.74051 5.99591 6.01752 6.04970 6.06174 6.08639 6.12548 6.37333 6.40028 6.50858 6.66118 6.93973 6.94891 7.14744 7.23755 7.25200 7.37337 7.40828 7.53195 8.15993 8.31373 8.78461 8.91998 9.37178 10.88148 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002269 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.998983 B =12334.978883 C =13494.214158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.451 6.451 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.184 4.184 8 C 0.128 3.872 9 O -0.278 6.278 10 C 0.065 3.935 11 H 0.093 0.907 12 C -0.175 4.175 13 C 0.514 3.486 14 O -0.512 6.512 15 N -0.705 5.705 16 C 0.262 3.738 17 H 0.071 0.929 18 C -0.512 4.512 19 H 0.080 0.920 20 C 0.086 3.914 21 N -0.882 5.882 22 Si 0.865 3.135 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.255 1.255 26 C -0.048 4.048 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.146 4.146 30 C -0.116 4.116 31 C -0.132 4.132 32 C -0.093 4.093 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.384 0.616 43 H 0.268 0.732 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.112 0.888 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.203 -8.062 2.443 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.271 3.729 3 O -0.326 6.326 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.203 4.203 8 C 0.082 3.918 9 O -0.190 6.190 10 C 0.005 3.995 11 H 0.111 0.889 12 C -0.233 4.233 13 C 0.297 3.703 14 O -0.386 6.386 15 N -0.357 5.357 16 C 0.160 3.840 17 H 0.088 0.912 18 C -0.550 4.550 19 H 0.098 0.902 20 C -0.119 4.119 21 N -0.517 5.517 22 Si 0.693 3.307 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 C -0.049 4.049 27 C -0.135 4.135 28 C -0.137 4.137 29 C -0.164 4.164 30 C -0.134 4.134 31 C -0.151 4.151 32 C -0.112 4.112 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.217 0.783 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.130 0.870 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.251 -6.379 2.567 22.336 hybrid contribution 0.344 -0.537 0.600 0.875 sum -20.907 -6.916 3.167 22.248 Atomic orbital electron populations 1.22231 0.93450 1.05188 1.04577 1.22522 0.91714 0.87467 0.71190 1.90574 1.72179 1.34265 1.35612 1.20276 0.93292 0.95065 1.05040 1.21270 0.99995 0.91283 1.01068 1.20894 0.93296 0.98258 0.98543 1.21622 0.95570 0.97553 1.05534 1.19003 0.83195 0.93817 0.95773 1.86307 1.15135 1.30647 1.86905 1.22380 0.93809 0.84487 0.98799 0.88945 1.22332 1.03418 1.01823 0.95685 1.19669 0.85220 0.85808 0.79607 1.90738 1.74217 1.23973 1.49649 1.46270 1.16324 1.07815 1.65255 1.18300 0.79632 0.91291 0.94728 0.91159 1.21018 1.08862 1.28870 0.96242 0.90192 1.24912 0.95684 0.94408 0.96930 1.69873 1.17101 1.33734 1.31009 0.87087 0.79218 0.78828 0.85593 1.19562 1.21021 1.18012 1.20686 0.95823 0.96076 0.92354 1.20831 1.01373 0.91884 0.99363 1.21026 0.99405 0.97875 0.95419 1.20909 1.02121 0.97156 0.96212 1.20996 1.00109 0.92720 0.99618 1.21005 1.00761 0.98074 0.95217 1.20715 0.92765 0.97372 1.00347 0.88752 0.89667 0.88738 0.85003 0.85091 0.84616 0.90138 0.90080 0.91266 0.78265 0.92202 0.86544 0.86843 0.87012 0.86875 0.86999 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 8.93 36.01 0.32 -0.78 16 2 C 0.39 4.06 7.23 -30.68 -0.22 3.84 16 3 O -0.45 -6.49 17.08 5.58 0.10 -6.40 16 4 C -0.14 -1.45 5.87 -105.08 -0.62 -2.06 16 5 C -0.12 -0.92 9.47 -39.10 -0.37 -1.29 16 6 C -0.09 -0.72 10.02 -39.68 -0.40 -1.12 16 7 C -0.18 -1.86 8.21 -39.32 -0.32 -2.18 16 8 C 0.13 1.73 6.58 -39.29 -0.26 1.48 16 9 O -0.28 -4.63 9.33 -39.39 -0.37 -5.00 16 10 C 0.07 0.95 2.65 -27.88 -0.07 0.88 16 11 H 0.09 1.04 6.34 -51.93 -0.33 0.71 16 12 C -0.18 -2.10 9.05 37.16 0.34 -1.76 16 13 C 0.51 10.23 7.19 -10.99 -0.08 10.15 16 14 O -0.51 -13.01 16.16 -14.36 -0.23 -13.24 16 15 N -0.71 -13.26 4.91 -56.07 -0.28 -13.53 16 16 C 0.26 5.95 1.83 -70.24 -0.13 5.82 16 17 H 0.07 1.78 4.43 -51.93 -0.23 1.55 16 18 C -0.51 -13.86 9.06 -34.44 -0.31 -14.17 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 20 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 21 N -0.88 -26.69 13.96 55.43 0.77 -25.92 16 22 Si 0.87 21.70 24.99 -169.99 -4.25 17.45 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.26 -6.22 5.68 56.52 0.32 -5.90 16 26 C -0.05 -0.96 4.80 -104.62 -0.50 -1.46 16 27 C -0.12 -1.99 8.94 -39.58 -0.35 -2.34 16 28 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 29 C -0.15 -2.15 10.05 -39.58 -0.40 -2.55 16 30 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 31 C -0.13 -2.54 8.65 -39.58 -0.34 -2.88 16 32 C -0.09 -1.26 9.54 -38.94 -0.37 -1.63 16 33 H 0.09 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.09 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.13 0.58 7.05 -52.48 -0.37 0.21 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 1.12 5.38 -52.49 -0.28 0.83 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.82 7.57 -51.93 -0.39 0.42 16 41 H 0.07 0.66 6.84 -51.93 -0.36 0.31 16 42 H 0.38 5.66 6.62 -40.82 -0.27 5.39 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.12 1.80 7.27 -52.49 -0.38 1.42 16 45 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.11 2.19 6.06 -52.49 -0.32 1.87 16 49 H 0.14 2.14 7.65 -52.49 -0.40 1.74 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -36.48 406.16 -9.46 -45.94 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.34 Total: 8.73 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -4.98 Total: -14.15 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.50 Total: -39.45 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.50 Total: -24.64 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.25 Total: 17.45 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.48 -9.46 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408513991.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.581 kcal (2) G-P(sol) polarization free energy of solvation -36.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds