Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21254 * 119.99987 * 2 1 4 4 C 1.47181 * 120.00265 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.14255 * 359.72389 * 4 2 1 6 6 C 1.37897 * 119.93934 * 180.25096 * 5 4 2 7 7 C 1.38333 * 120.23158 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.29745 * 359.97438 * 7 6 5 9 9 O 1.35906 * 119.97152 * 179.97438 * 8 7 6 10 10 C 1.42894 * 117.00112 * 354.75386 * 9 8 7 11 11 H 1.08995 * 109.47465 * 325.10791 * 10 9 8 12 12 C 1.53002 * 109.47420 * 85.10456 * 10 9 8 13 13 C 1.50701 * 109.47360 * 205.10312 * 10 9 8 14 14 O 1.21279 * 119.99804 * 0.02562 * 13 10 9 15 15 N 1.34776 * 120.00321 * 180.02562 * 13 10 9 16 16 C 1.46502 * 120.00226 * 180.02562 * 15 13 10 17 17 H 1.09002 * 109.46558 * 324.99986 * 16 15 13 18 18 C 1.50700 * 109.46981 * 84.99715 * 16 15 13 19 19 H 1.08005 * 120.00088 * 34.90021 * 18 16 15 20 20 C 1.37878 * 119.99701 * 214.89598 * 18 16 15 21 21 N 1.31507 * 120.00439 * 5.26748 * 20 18 16 22 22 Si 1.86805 * 119.99567 * 185.26611 * 20 18 16 23 23 H 1.48503 * 109.47056 * 90.00317 * 22 20 18 24 24 H 1.48497 * 109.46806 * 209.99643 * 22 20 18 25 25 H 1.48500 * 109.47207 * 329.99994 * 22 20 18 26 26 C 1.50696 * 109.46886 * 204.99917 * 16 15 13 27 27 C 1.38229 * 120.00234 * 313.44645 * 26 16 15 28 28 C 1.38245 * 120.00066 * 179.79195 * 27 26 16 29 29 C 1.38234 * 119.99513 * 0.44072 * 28 27 26 30 30 C 1.38237 * 120.00348 * 359.81178 * 29 28 27 31 31 C 1.38228 * 119.99678 * 359.97438 * 30 29 28 32 32 C 1.38431 * 120.05424 * 359.97438 * 8 7 6 33 33 H 1.09004 * 109.47332 * 239.99874 * 1 2 3 34 34 H 1.08995 * 109.47021 * 0.02562 * 1 2 3 35 35 H 1.09000 * 109.47021 * 120.00513 * 1 2 3 36 36 H 1.08006 * 120.03489 * 0.27850 * 5 4 2 37 37 H 1.07996 * 119.88239 * 180.02562 * 6 5 4 38 38 H 1.08000 * 119.85372 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47410 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47310 * 300.00763 * 12 10 9 41 41 H 1.09006 * 109.46964 * 59.99926 * 12 10 9 42 42 H 0.97002 * 119.99691 * 359.97438 * 15 13 10 43 43 H 0.96998 * 120.00377 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00360 * 359.97438 * 27 26 16 45 45 H 1.08000 * 119.99926 * 180.27419 * 28 27 26 46 46 H 1.07998 * 119.99692 * 179.83652 * 29 28 27 47 47 H 1.08000 * 119.99555 * 179.97438 * 30 29 28 48 48 H 1.08005 * 119.99890 * 179.97438 * 31 30 29 49 49 H 1.08002 * 120.11270 * 180.02562 * 32 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4877 0.0069 6 6 2.2404 -3.6794 0.0127 7 6 3.6238 -3.6801 0.0127 8 6 4.3248 -2.4815 0.0064 9 8 5.6838 -2.4898 0.0070 10 6 6.3247 -3.7609 0.1306 11 1 5.7345 -4.4035 0.7839 12 6 6.4433 -4.4089 -1.2503 13 6 7.7001 -3.5751 0.7179 14 8 8.0926 -2.4636 1.0030 15 7 8.4940 -4.6441 0.9264 16 6 9.8308 -4.4635 1.4979 17 1 10.2568 -3.5274 1.1367 18 6 9.7333 -4.4241 3.0012 19 1 9.0024 -5.0343 3.5111 20 6 10.5773 -3.6093 3.7256 21 7 11.3957 -2.7901 3.1023 22 14 10.5581 -3.6689 5.5926 23 1 11.5350 -4.6824 6.0655 24 1 10.9262 -2.3361 6.1341 25 1 9.1978 -4.0356 6.0622 26 6 10.7143 -5.6112 1.0816 27 6 10.2509 -6.9100 1.1769 28 6 11.0598 -7.9625 0.7909 29 6 12.3354 -7.7166 0.3182 30 6 12.8006 -6.4180 0.2278 31 6 11.9901 -5.3654 0.6096 32 6 3.6405 -1.2781 -0.0005 33 1 -0.3634 -0.5139 0.8900 34 1 -0.3633 1.0276 -0.0005 35 1 -0.3633 -0.5139 -0.8899 36 1 0.4666 -2.4911 0.0069 37 1 1.7019 -4.6155 0.0172 38 1 4.1610 -4.6170 0.0176 39 1 6.9326 -5.3783 -1.1561 40 1 5.4485 -4.5433 -1.6752 41 1 7.0336 -3.7664 -1.9037 42 1 8.1799 -5.5332 0.6987 43 1 11.9897 -2.2171 3.6119 44 1 9.2559 -7.1024 1.5501 45 1 10.6962 -8.9770 0.8612 46 1 12.9683 -8.5390 0.0192 47 1 13.7974 -6.2261 -0.1411 48 1 12.3538 -4.3508 0.5394 49 1 4.1848 -0.3453 -0.0058 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408513992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = -56.571932 kcal Electronic energy + Delta-G solvation = -32004.472478 eV Core-core repulsion = 27669.050480 eV Total energy + Delta-G solvation = -4335.421998 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.68486 -39.65425 -38.88316 -38.11165 -36.98042 -34.49135 -32.79406 -31.93553 -31.90963 -30.67111 -30.21451 -29.90986 -29.12830 -26.71384 -24.79876 -24.02071 -23.06778 -22.46011 -21.92712 -20.69045 -19.95990 -19.32826 -18.20264 -17.35480 -16.69069 -16.36750 -16.08777 -15.94958 -15.62100 -15.33319 -15.22946 -15.03933 -14.67504 -14.48106 -14.19679 -13.93970 -13.90007 -13.71118 -13.29286 -13.05918 -12.76986 -12.68193 -12.64804 -12.55524 -12.45348 -12.30208 -12.05369 -11.98245 -11.77648 -11.57372 -11.15150 -11.05350 -11.00582 -10.92765 -10.45001 -10.38452 -10.02923 -9.96717 -9.80336 -9.26032 -8.97518 -8.63094 -8.36102 -8.24099 -8.14402 -7.77690 -6.13815 -4.21382 0.41561 1.22043 2.08199 2.11496 2.18833 2.86913 3.25977 3.32298 3.34131 3.39247 3.58961 3.80221 4.12350 4.34173 4.52560 4.58318 4.65477 4.69365 4.85494 4.89193 4.97664 5.01230 5.06436 5.14410 5.19883 5.26928 5.34157 5.49125 5.50195 5.55704 5.62001 5.65857 5.67569 5.73284 5.99741 6.01697 6.05973 6.11711 6.13662 6.22002 6.32295 6.44364 6.64627 6.74921 7.11428 7.14227 7.19316 7.27747 7.32531 7.45583 7.62505 7.72150 7.83641 8.06473 8.35629 8.86046 9.11079 9.43498 10.90721 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.002283 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.588384 B =12264.029822 C =13674.579673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.394 3.606 3 O -0.452 6.452 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.184 4.184 8 C 0.129 3.871 9 O -0.278 6.278 10 C 0.062 3.938 11 H 0.093 0.907 12 C -0.174 4.174 13 C 0.511 3.489 14 O -0.505 6.505 15 N -0.711 5.711 16 C 0.288 3.712 17 H 0.090 0.910 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.076 3.924 21 N -0.870 5.870 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.038 4.038 27 C -0.126 4.126 28 C -0.127 4.127 29 C -0.150 4.150 30 C -0.124 4.124 31 C -0.107 4.107 32 C -0.093 4.093 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.378 0.622 43 H 0.266 0.734 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.122 0.878 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 -7.152 -9.373 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.271 3.729 3 O -0.327 6.327 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.203 4.203 8 C 0.083 3.917 9 O -0.190 6.190 10 C 0.002 3.998 11 H 0.111 0.889 12 C -0.232 4.232 13 C 0.293 3.707 14 O -0.379 6.379 15 N -0.363 5.363 16 C 0.187 3.813 17 H 0.108 0.892 18 C -0.557 4.557 19 H 0.077 0.923 20 C -0.130 4.130 21 N -0.505 5.505 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.040 4.040 27 C -0.144 4.144 28 C -0.146 4.146 29 C -0.168 4.168 30 C -0.142 4.142 31 C -0.126 4.126 32 C -0.112 4.112 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.211 0.789 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.140 0.860 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.377 -5.425 -9.139 19.523 hybrid contribution -0.081 -0.995 1.154 1.525 sum -16.458 -6.419 -7.986 19.387 Atomic orbital electron populations 1.22230 0.93476 1.05161 1.04574 1.22519 0.91702 0.87476 0.71170 1.90572 1.72189 1.34262 1.35652 1.20266 0.93304 0.95042 1.05090 1.21264 0.99964 0.91291 1.01152 1.20893 0.93303 0.98242 0.98561 1.21619 0.95560 0.97577 1.05502 1.19007 0.83267 0.93788 0.95643 1.86289 1.15097 1.30818 1.86792 1.22448 0.94490 0.84472 0.98404 0.88918 1.22325 1.03389 1.01663 0.95781 1.19616 0.85190 0.86069 0.79866 1.90771 1.73543 1.24104 1.49449 1.46558 1.18218 1.07428 1.64070 1.17958 0.76466 0.93685 0.93178 0.89226 1.21132 1.19249 1.25496 0.89847 0.92289 1.24951 0.95244 0.93813 0.98982 1.69872 1.22605 1.22132 1.35919 0.86517 0.78477 0.77519 0.85062 1.20460 1.20942 1.19799 1.20689 0.95896 0.95469 0.91907 1.20857 0.99790 0.92542 1.01234 1.20952 0.94705 0.98160 1.00737 1.20862 0.96318 0.96332 1.03302 1.21036 0.99132 0.93007 1.01027 1.21081 0.94094 0.99163 0.98249 1.20709 0.92755 0.97362 1.00380 0.88733 0.89683 0.88773 0.85033 0.85121 0.84647 0.90158 0.91300 0.90599 0.78928 0.92395 0.87102 0.87353 0.87464 0.87193 0.85952 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 8.93 36.00 0.32 -0.86 16 2 C 0.39 4.22 7.23 -30.68 -0.22 4.00 16 3 O -0.45 -6.66 17.08 5.58 0.10 -6.57 16 4 C -0.14 -1.52 5.87 -105.08 -0.62 -2.13 16 5 C -0.12 -0.98 9.47 -39.09 -0.37 -1.36 16 6 C -0.09 -0.78 10.02 -39.67 -0.40 -1.18 16 7 C -0.18 -1.97 8.25 -39.32 -0.32 -2.30 16 8 C 0.13 1.82 6.59 -39.28 -0.26 1.56 16 9 O -0.28 -4.76 9.33 -39.36 -0.37 -5.12 16 10 C 0.06 0.94 2.64 -27.88 -0.07 0.86 16 11 H 0.09 1.17 6.28 -51.93 -0.33 0.84 16 12 C -0.17 -1.99 9.07 37.16 0.34 -1.65 16 13 C 0.51 10.49 7.19 -10.99 -0.08 10.41 16 14 O -0.51 -13.34 16.16 -14.35 -0.23 -13.57 16 15 N -0.71 -13.85 4.91 -56.07 -0.28 -14.13 16 16 C 0.29 6.79 2.31 -70.24 -0.16 6.63 16 17 H 0.09 2.50 6.47 -51.93 -0.34 2.16 16 18 C -0.52 -13.70 8.49 -34.44 -0.29 -13.99 16 19 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 20 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 21 N -0.87 -24.76 12.77 55.43 0.71 -24.05 16 22 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 26 C -0.04 -0.80 4.93 -104.63 -0.52 -1.31 16 27 C -0.13 -2.25 8.91 -39.58 -0.35 -2.60 16 28 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 29 C -0.15 -2.37 10.05 -39.58 -0.40 -2.76 16 30 C -0.12 -2.14 10.05 -39.59 -0.40 -2.54 16 31 C -0.11 -2.18 9.67 -39.58 -0.38 -2.57 16 32 C -0.09 -1.31 9.54 -38.94 -0.37 -1.68 16 33 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.13 0.65 7.05 -52.48 -0.37 0.28 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.14 1.21 5.41 -52.49 -0.28 0.93 16 39 H 0.08 0.77 7.56 -51.93 -0.39 0.38 16 40 H 0.07 0.64 6.94 -51.93 -0.36 0.28 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.38 5.87 6.68 -40.82 -0.27 5.60 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.11 1.80 7.33 -52.49 -0.38 1.41 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 48 H 0.12 2.64 7.99 -52.48 -0.42 2.22 16 49 H 0.14 2.20 7.65 -52.49 -0.40 1.80 16 LS Contribution 415.99 15.07 6.27 6.27 Total: -1.00 -34.99 415.99 -10.34 -45.33 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.47 Total: 9.33 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -5.05 Total: -13.89 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.43 Total: -38.18 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.50 Total: -25.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.99 -10.34 -45.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408513992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.241 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds