Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21254 * 119.99987 * 2 1 4 4 C 1.47181 * 120.00265 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.14255 * 359.72389 * 4 2 1 6 6 C 1.37897 * 119.93934 * 180.25096 * 5 4 2 7 7 C 1.38333 * 120.23158 * 0.02562 * 6 5 4 8 8 C 1.38854 * 120.29745 * 359.97438 * 7 6 5 9 9 O 1.35906 * 119.97152 * 179.97438 * 8 7 6 10 10 C 1.42894 * 117.00112 * 354.75386 * 9 8 7 11 11 H 1.08995 * 109.47465 * 325.10791 * 10 9 8 12 12 C 1.53002 * 109.47420 * 85.10456 * 10 9 8 13 13 C 1.50701 * 109.47360 * 205.10312 * 10 9 8 14 14 O 1.21279 * 119.99804 * 0.02562 * 13 10 9 15 15 N 1.34776 * 120.00321 * 180.02562 * 13 10 9 16 16 C 1.46502 * 120.00226 * 180.02562 * 15 13 10 17 17 H 1.09002 * 109.46558 * 324.99986 * 16 15 13 18 18 C 1.50700 * 109.46981 * 84.99715 * 16 15 13 19 19 H 1.08005 * 120.00088 * 34.90021 * 18 16 15 20 20 C 1.37878 * 119.99701 * 214.89598 * 18 16 15 21 21 N 1.31507 * 120.00439 * 5.26748 * 20 18 16 22 22 Si 1.86805 * 119.99567 * 185.26611 * 20 18 16 23 23 H 1.48503 * 109.47056 * 90.00317 * 22 20 18 24 24 H 1.48497 * 109.46806 * 209.99643 * 22 20 18 25 25 H 1.48500 * 109.47207 * 329.99994 * 22 20 18 26 26 C 1.50696 * 109.46886 * 204.99917 * 16 15 13 27 27 C 1.38229 * 120.00234 * 313.44645 * 26 16 15 28 28 C 1.38245 * 120.00066 * 179.79195 * 27 26 16 29 29 C 1.38234 * 119.99513 * 0.44072 * 28 27 26 30 30 C 1.38237 * 120.00348 * 359.81178 * 29 28 27 31 31 C 1.38228 * 119.99678 * 359.97438 * 30 29 28 32 32 C 1.38431 * 120.05424 * 359.97438 * 8 7 6 33 33 H 1.09004 * 109.47332 * 239.99874 * 1 2 3 34 34 H 1.08995 * 109.47021 * 0.02562 * 1 2 3 35 35 H 1.09000 * 109.47021 * 120.00513 * 1 2 3 36 36 H 1.08006 * 120.03489 * 0.27850 * 5 4 2 37 37 H 1.07996 * 119.88239 * 180.02562 * 6 5 4 38 38 H 1.08000 * 119.85372 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47410 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.47310 * 300.00763 * 12 10 9 41 41 H 1.09006 * 109.46964 * 59.99926 * 12 10 9 42 42 H 0.97002 * 119.99691 * 359.97438 * 15 13 10 43 43 H 0.96998 * 120.00377 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00360 * 359.97438 * 27 26 16 45 45 H 1.08000 * 119.99926 * 180.27419 * 28 27 26 46 46 H 1.07998 * 119.99692 * 179.83652 * 29 28 27 47 47 H 1.08000 * 119.99555 * 179.97438 * 30 29 28 48 48 H 1.08005 * 119.99890 * 179.97438 * 31 30 29 49 49 H 1.08002 * 120.11270 * 180.02562 * 32 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4877 0.0069 6 6 2.2404 -3.6794 0.0127 7 6 3.6238 -3.6801 0.0127 8 6 4.3248 -2.4815 0.0064 9 8 5.6838 -2.4898 0.0070 10 6 6.3247 -3.7609 0.1306 11 1 5.7345 -4.4035 0.7839 12 6 6.4433 -4.4089 -1.2503 13 6 7.7001 -3.5751 0.7179 14 8 8.0926 -2.4636 1.0030 15 7 8.4940 -4.6441 0.9264 16 6 9.8308 -4.4635 1.4979 17 1 10.2568 -3.5274 1.1367 18 6 9.7333 -4.4241 3.0012 19 1 9.0024 -5.0343 3.5111 20 6 10.5773 -3.6093 3.7256 21 7 11.3957 -2.7901 3.1023 22 14 10.5581 -3.6689 5.5926 23 1 11.5350 -4.6824 6.0655 24 1 10.9262 -2.3361 6.1341 25 1 9.1978 -4.0356 6.0622 26 6 10.7143 -5.6112 1.0816 27 6 10.2509 -6.9100 1.1769 28 6 11.0598 -7.9625 0.7909 29 6 12.3354 -7.7166 0.3182 30 6 12.8006 -6.4180 0.2278 31 6 11.9901 -5.3654 0.6096 32 6 3.6405 -1.2781 -0.0005 33 1 -0.3634 -0.5139 0.8900 34 1 -0.3633 1.0276 -0.0005 35 1 -0.3633 -0.5139 -0.8899 36 1 0.4666 -2.4911 0.0069 37 1 1.7019 -4.6155 0.0172 38 1 4.1610 -4.6170 0.0176 39 1 6.9326 -5.3783 -1.1561 40 1 5.4485 -4.5433 -1.6752 41 1 7.0336 -3.7664 -1.9037 42 1 8.1799 -5.5332 0.6987 43 1 11.9897 -2.2171 3.6119 44 1 9.2559 -7.1024 1.5501 45 1 10.6962 -8.9770 0.8612 46 1 12.9683 -8.5390 0.0192 47 1 13.7974 -6.2261 -0.1411 48 1 12.3538 -4.3508 0.5394 49 1 4.1848 -0.3453 -0.0058 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408513992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -78.493248 kcal Electronic energy + Delta-G solvation = -32005.423057 eV Core-core repulsion = 27669.050480 eV Total energy + Delta-G solvation = -4336.372578 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 367.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.74564 -40.84193 -40.20312 -39.49748 -38.05766 -36.27149 -34.53561 -33.34565 -32.71228 -31.86509 -31.56650 -31.06895 -29.84384 -28.52936 -26.04676 -25.20627 -24.43747 -23.40587 -23.25790 -22.01949 -21.36274 -20.63110 -19.18100 -18.82250 -18.53297 -17.40709 -17.28034 -16.97652 -16.88744 -16.72695 -16.31208 -16.19925 -15.99225 -15.74431 -15.60220 -15.37149 -15.17643 -14.70701 -14.60225 -14.36093 -14.17719 -14.04924 -13.74444 -13.54626 -13.39489 -13.26825 -13.18860 -13.02289 -12.93320 -12.90561 -12.80724 -12.61205 -12.16024 -12.13738 -11.99178 -11.94512 -11.73613 -11.59055 -10.86912 -10.74630 -10.59971 -10.09219 -9.86801 -9.62865 -9.37075 -9.29386 -8.18204 -6.32963 -0.42388 0.38176 0.68480 0.69761 1.32691 1.35631 1.37880 1.43782 1.71418 1.76534 2.34747 2.67640 2.76372 3.05522 3.14425 3.21149 3.58636 3.79511 3.82321 3.89985 3.99220 4.06445 4.20782 4.22342 4.28850 4.33863 4.37734 4.41818 4.49378 4.60387 4.65510 4.71462 4.75940 4.82857 4.87313 4.90421 5.07769 5.13603 5.15424 5.27174 5.29894 5.31626 5.37753 5.41399 5.58859 5.69213 5.74422 5.76592 5.79562 5.99444 6.16950 6.31109 6.34397 6.49970 6.68855 6.90599 7.33294 7.54845 8.84961 Molecular weight = 367.16amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.002283 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.588384 B =12264.029822 C =13674.579673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.390 3.610 3 O -0.511 6.511 4 C -0.150 4.150 5 C -0.094 4.094 6 C -0.081 4.081 7 C -0.178 4.178 8 C 0.097 3.903 9 O -0.322 6.322 10 C 0.073 3.927 11 H 0.126 0.874 12 C -0.165 4.165 13 C 0.499 3.501 14 O -0.580 6.580 15 N -0.697 5.697 16 C 0.296 3.704 17 H 0.031 0.969 18 C -0.526 4.526 19 H 0.060 0.940 20 C 0.018 3.982 21 N -0.910 5.910 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.266 1.266 26 C -0.064 4.064 27 C -0.127 4.127 28 C -0.116 4.116 29 C -0.138 4.138 30 C -0.126 4.126 31 C -0.137 4.137 32 C -0.132 4.132 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.159 0.841 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.402 0.598 43 H 0.262 0.738 44 H 0.129 0.871 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.131 0.869 48 H 0.087 0.913 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.121 -13.186 -9.820 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.271 3.729 3 O -0.390 6.390 4 C -0.151 4.151 5 C -0.112 4.112 6 C -0.099 4.099 7 C -0.197 4.197 8 C 0.052 3.948 9 O -0.236 6.236 10 C 0.014 3.986 11 H 0.143 0.857 12 C -0.222 4.222 13 C 0.285 3.715 14 O -0.459 6.459 15 N -0.348 5.348 16 C 0.194 3.806 17 H 0.049 0.951 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.183 4.183 21 N -0.547 5.547 22 Si 0.780 3.220 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.191 1.191 26 C -0.066 4.066 27 C -0.146 4.146 28 C -0.134 4.134 29 C -0.156 4.156 30 C -0.144 4.144 31 C -0.156 4.156 32 C -0.151 4.151 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.198 0.802 37 H 0.196 0.804 38 H 0.176 0.824 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.238 0.762 43 H 0.070 0.930 44 H 0.147 0.853 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.149 0.851 48 H 0.105 0.895 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.242 -11.544 -9.606 25.205 hybrid contribution 1.031 0.798 1.183 1.760 sum -19.211 -10.747 -8.423 23.569 Atomic orbital electron populations 1.22282 0.88842 1.06076 1.07234 1.23394 0.94106 0.86421 0.68933 1.90560 1.73763 1.36037 1.38675 1.20542 0.92020 0.97000 1.05491 1.21826 1.02214 0.89623 0.97505 1.21483 0.92268 1.00139 0.95989 1.21933 0.96914 0.96626 1.04210 1.19229 0.82062 0.95238 0.98278 1.86226 1.17389 1.32141 1.87862 1.22395 0.90814 0.84683 1.00695 0.85712 1.22337 1.05231 1.01740 0.92942 1.20757 0.87272 0.84948 0.78566 1.90734 1.75619 1.26944 1.52586 1.46218 1.16946 1.08618 1.63065 1.17486 0.78329 0.92849 0.91983 0.95059 1.21463 1.18622 1.24830 0.91509 0.92155 1.25782 0.95415 0.93918 1.03205 1.70049 1.24001 1.23547 1.37134 0.85610 0.78826 0.77332 0.80233 1.19126 1.21582 1.19081 1.20413 0.95605 0.95880 0.94657 1.21043 1.01062 0.91459 1.00993 1.21422 0.94147 0.99416 0.98423 1.21362 0.96757 0.96360 1.01119 1.21284 0.99659 0.93074 1.00376 1.21008 0.95075 0.98786 1.00693 1.20687 0.94597 0.96274 1.03579 0.85875 0.89948 0.85584 0.80170 0.80423 0.82403 0.87653 0.88111 0.92765 0.76152 0.92950 0.85329 0.82993 0.83350 0.85087 0.89484 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.93 71.24 0.64 -1.02 16 2 C 0.39 8.40 7.23 28.04 0.20 8.60 16 3 O -0.51 -16.54 17.08 -2.95 -0.05 -16.59 16 4 C -0.15 -3.27 5.87 -20.16 -0.12 -3.39 16 5 C -0.09 -1.14 9.47 22.59 0.21 -0.93 16 6 C -0.08 -0.95 10.02 22.21 0.22 -0.73 16 7 C -0.18 -3.31 8.25 22.44 0.19 -3.13 16 8 C 0.10 2.83 6.59 22.46 0.15 2.98 16 9 O -0.32 -11.93 9.33 -73.46 -0.69 -12.61 16 10 C 0.07 2.25 2.64 29.85 0.08 2.33 16 11 H 0.13 2.93 6.28 -2.39 -0.02 2.91 16 12 C -0.17 -3.57 9.07 71.98 0.65 -2.92 16 13 C 0.50 21.94 7.19 87.66 0.63 22.57 16 14 O -0.58 -33.94 16.16 16.01 0.26 -33.68 16 15 N -0.70 -28.23 4.91 -449.69 -2.21 -30.44 16 16 C 0.30 14.92 2.31 43.50 0.10 15.02 16 17 H 0.03 1.95 6.47 -2.39 -0.02 1.93 16 18 C -0.53 -29.09 8.49 25.60 0.22 -28.87 16 19 H 0.06 3.22 7.82 -2.91 -0.02 3.20 16 20 C 0.02 1.05 5.45 84.66 0.46 1.51 16 21 N -0.91 -56.14 12.77 21.45 0.27 -55.87 16 22 Si 0.95 45.71 29.54 68.60 2.03 47.74 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 C -0.06 -2.76 4.93 -19.87 -0.10 -2.86 16 27 C -0.13 -4.28 8.91 22.27 0.20 -4.08 16 28 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 29 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 30 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 31 C -0.14 -5.86 9.67 22.27 0.22 -5.65 16 32 C -0.13 -4.08 9.54 22.68 0.22 -3.86 16 33 H 0.12 0.44 8.08 -2.38 -0.02 0.42 16 34 H 0.08 0.82 8.12 -2.39 -0.02 0.81 16 35 H 0.13 0.36 8.09 -2.39 -0.02 0.34 16 36 H 0.18 0.45 7.05 -2.91 -0.02 0.43 16 37 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.16 2.11 5.41 -2.91 -0.02 2.10 16 39 H 0.10 1.71 7.56 -2.39 -0.02 1.69 16 40 H 0.10 1.56 6.94 -2.39 -0.02 1.54 16 41 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.40 12.16 6.68 -92.71 -0.62 11.54 16 43 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.13 3.77 7.33 -2.91 -0.02 3.75 16 45 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 47 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 48 H 0.09 4.22 7.99 -2.91 -0.02 4.20 16 49 H 0.10 3.80 7.65 -2.91 -0.02 3.77 16 Total: -1.00 -92.74 415.99 4.82 -87.92 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.37 Total: 28.46 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.84 Total: -14.93 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.93 Total: -86.31 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -0.48 Total: -62.89 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -92.74 4.82 -87.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408513992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.426 kcal (2) G-P(sol) polarization free energy of solvation -92.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds