Wall clock time and date at job start Tue Mar 31 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47284 * 269.99947 * 3 2 1 5 5 H 1.48493 * 109.47123 * 30.00478 * 3 2 1 6 6 H 1.48503 * 109.46692 * 150.00384 * 3 2 1 7 7 C 1.38657 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99643 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00419 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00208 * 185.05834 * 9 7 2 11 11 C 1.38874 * 120.07080 * 354.46682 * 10 9 7 12 12 C 1.38095 * 119.93564 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06851 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.93562 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.56366 * 340.22953 * 14 13 12 16 16 N 1.46663 * 109.56551 * 220.00254 * 14 13 12 17 17 C 1.39982 * 118.34364 * 289.60052 * 16 14 13 18 18 C 1.38917 * 119.34332 * 160.16206 * 17 16 14 19 19 C 1.38063 * 120.04175 * 180.08855 * 18 17 16 20 20 C 1.38408 * 119.67793 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.86435 * 180.02562 * 20 19 18 22 22 C 1.38076 * 120.27097 * 0.02562 * 20 19 18 23 23 C 1.38619 * 120.15633 * 340.22685 * 17 16 14 24 24 C 1.49582 * 122.35737 * 359.88768 * 23 17 16 25 25 H 1.09003 * 109.55506 * 226.40114 * 24 23 17 26 26 C 1.51004 * 111.44337 * 105.00826 * 24 23 17 27 27 C 1.29254 * 111.29051 * 216.85028 * 26 24 23 28 28 C 1.51625 * 110.19959 * 359.63616 * 27 26 24 29 29 C 1.51873 * 108.96444 * 100.44471 * 14 13 12 30 30 H 1.09002 * 111.92771 * 188.72327 * 29 14 13 31 31 C 1.38304 * 120.13476 * 0.23736 * 13 12 11 32 32 C 1.38101 * 120.06875 * 359.48590 * 31 13 12 33 33 H 0.96992 * 119.99707 * 359.97438 * 1 2 3 34 34 H 1.08003 * 120.03557 * 0.02562 * 11 10 9 35 35 H 1.08003 * 119.97081 * 179.97438 * 12 11 10 36 36 H 0.97002 * 120.82546 * 109.58431 * 16 14 13 37 37 H 1.07998 * 119.97926 * 0.11312 * 18 17 16 38 38 H 1.07997 * 120.15886 * 179.97438 * 19 18 17 39 39 H 1.07995 * 119.72721 * 180.02562 * 22 20 19 40 40 H 1.08000 * 124.87436 * 36.99815 * 26 24 23 41 41 H 1.08001 * 125.05018 * 179.69251 * 27 26 24 42 42 H 1.09008 * 110.63209 * 263.21760 * 28 27 26 43 43 H 1.08996 * 110.63525 * 140.17740 * 28 27 26 44 44 H 1.07997 * 119.96535 * 179.72431 * 31 13 12 45 45 H 1.08004 * 120.03372 * 180.25379 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4571 -3.4396 0.0922 12 6 4.2024 -4.5971 0.2008 13 6 3.5687 -5.8204 0.3224 14 6 4.3849 -7.0817 0.4402 15 1 5.3933 -6.9000 0.0684 16 7 3.7565 -8.1486 -0.3460 17 6 2.5487 -8.6880 0.1118 18 6 1.7294 -9.3737 -0.7762 19 6 0.5341 -9.9100 -0.3406 20 6 0.1582 -9.7613 0.9831 21 17 -1.3433 -10.4343 1.5362 22 6 0.9727 -9.0798 1.8656 23 6 2.1767 -8.5363 1.4385 24 6 3.0269 -7.8072 2.4300 25 1 3.1010 -8.3920 3.3469 26 6 2.4609 -6.4432 2.7452 27 6 3.4010 -5.5717 2.9103 28 6 4.7578 -6.2262 2.7380 29 6 4.4406 -7.4991 1.8993 30 1 5.1422 -8.3172 2.0622 31 6 2.1874 -5.8890 0.3306 32 6 1.4366 -4.7345 0.2280 33 1 -0.4849 0.8400 0.0004 34 1 3.9526 -2.4846 -0.0023 35 1 5.2812 -4.5472 0.1900 36 1 4.1676 -8.4721 -1.1629 37 1 2.0279 -9.4876 -1.8078 38 1 -0.1044 -10.4431 -1.0294 39 1 0.6710 -8.9693 2.8966 40 1 1.4084 -6.2153 2.8270 41 1 3.2457 -4.5277 3.1390 42 1 5.1785 -6.4989 3.7060 43 1 5.4358 -5.5677 2.1952 44 1 1.6954 -6.8462 0.4211 45 1 0.3580 -4.7884 0.2386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408736222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:36 Heat of formation + Delta-G solvation = 68.524457 kcal Electronic energy + Delta-G solvation = -31150.307045 eV Core-core repulsion = 27125.185704 eV Total energy + Delta-G solvation = -4025.121341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.108 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76658 -38.93720 -38.19840 -36.44930 -36.04313 -35.04613 -32.31609 -31.99567 -31.09637 -29.88259 -28.71299 -28.43412 -27.05028 -25.42386 -23.85622 -22.79330 -22.21077 -21.71965 -20.95414 -19.00642 -18.37310 -17.96579 -17.44799 -16.91614 -16.69687 -15.93690 -15.53842 -15.04384 -14.69523 -14.62900 -14.34654 -14.14168 -13.93026 -13.54653 -13.41384 -13.22507 -12.73903 -12.67188 -12.57443 -12.37130 -12.00947 -11.98949 -11.71375 -11.66381 -11.54641 -11.28219 -11.16249 -10.99606 -10.87597 -10.85539 -10.66277 -10.54051 -10.50742 -10.37706 -9.67834 -9.31335 -8.93573 -8.80625 -8.56680 -7.91891 -7.34341 -6.98222 -6.43896 -4.02625 1.25823 1.37417 2.18816 2.27027 2.32141 2.83685 3.11930 3.12771 3.17490 3.47096 3.67243 3.96901 4.51257 4.57118 4.66812 4.82522 4.86689 5.03023 5.10768 5.17012 5.24993 5.32916 5.36703 5.39541 5.45267 5.52391 5.63793 5.68982 5.79503 5.87287 5.91454 5.96760 6.00274 6.03952 6.09769 6.25599 6.27352 6.33393 6.41352 6.47625 6.62334 6.77258 6.92417 6.94916 7.08656 7.21521 7.25059 7.30858 7.42838 7.48392 7.76602 7.88584 8.01479 9.01943 9.74102 10.74254 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.003008 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.266286 B = 9304.769137 C =10430.614005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.159 3.841 11 C -0.238 4.238 12 C -0.061 4.061 13 C -0.191 4.191 14 C 0.215 3.785 15 H 0.086 0.914 16 N -0.740 5.740 17 C 0.234 3.766 18 C -0.183 4.183 19 C -0.069 4.069 20 C -0.087 4.087 21 Cl -0.087 7.087 22 C -0.068 4.068 23 C -0.122 4.122 24 C -0.006 4.006 25 H 0.086 0.914 26 C -0.153 4.153 27 C -0.142 4.142 28 C -0.088 4.088 29 C -0.098 4.098 30 H 0.088 0.912 31 C -0.050 4.050 32 C -0.197 4.197 33 H 0.269 0.731 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.402 0.598 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.123 0.877 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.243 -18.996 2.968 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.084 6.084 10 C 0.105 3.895 11 C -0.258 4.258 12 C -0.079 4.079 13 C -0.193 4.193 14 C 0.110 3.890 15 H 0.104 0.896 16 N -0.368 5.368 17 C 0.130 3.870 18 C -0.205 4.205 19 C -0.089 4.089 20 C -0.116 4.116 21 Cl -0.059 7.059 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.024 4.024 25 H 0.104 0.896 26 C -0.171 4.171 27 C -0.160 4.160 28 C -0.126 4.126 29 C -0.118 4.118 30 H 0.106 0.894 31 C -0.068 4.068 32 C -0.216 4.216 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.237 0.763 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.140 0.860 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.771 -18.688 3.097 20.474 hybrid contribution 0.305 0.890 -0.397 1.021 sum 8.076 -17.797 2.700 19.730 Atomic orbital electron populations 1.70040 1.05933 1.27575 1.46266 1.25271 0.95805 0.98771 0.96676 0.85745 0.78921 0.80281 0.78677 1.19942 1.20274 1.19245 1.21294 0.91704 0.80899 1.52778 0.89190 1.83981 1.34404 1.11486 1.78499 1.19376 0.90253 0.87891 0.91962 1.21015 0.93737 0.98602 1.12410 1.20426 0.97693 0.91739 0.98076 1.19306 0.93905 0.93352 1.12746 1.19399 0.95014 0.84655 0.89918 0.89566 1.44778 1.22727 1.40646 1.28673 1.17543 0.86651 0.91466 0.91368 1.20595 0.95233 1.05511 0.99187 1.20736 0.96007 0.98453 0.93667 1.20458 0.90283 1.06002 0.94812 1.98338 1.32953 1.84568 1.90010 1.20781 0.92763 0.95714 0.99475 1.18962 0.97070 1.04060 0.92620 1.19327 0.92694 0.94383 0.96029 0.89641 1.22551 0.99265 0.93726 1.01577 1.22750 0.94439 0.98816 1.00010 1.21707 0.96811 0.95167 0.98908 1.22372 0.96279 0.97768 0.95334 0.89410 1.20887 0.93164 0.97318 0.95458 1.20178 0.99264 0.90426 1.11724 0.92081 0.85964 0.88082 0.76304 0.85403 0.85309 0.85328 0.86299 0.85875 0.91152 0.90848 0.85961 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.84 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -5.12 9.76 0.07 0.00 -5.12 16 10 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.24 -4.94 9.17 -39.40 -0.36 -5.30 16 12 C -0.06 -1.01 7.64 -39.61 -0.30 -1.31 16 13 C -0.19 -2.92 2.80 -104.57 -0.29 -3.22 16 14 C 0.22 2.52 3.15 -69.57 -0.22 2.30 16 15 H 0.09 0.88 8.00 -51.93 -0.42 0.47 16 16 N -0.74 -8.05 5.41 -53.74 -0.29 -8.34 16 17 C 0.23 2.79 4.48 -83.74 -0.37 2.42 16 18 C -0.18 -2.04 9.90 -39.39 -0.39 -2.43 16 19 C -0.07 -0.78 9.84 -39.58 -0.39 -1.17 16 20 C -0.09 -1.05 6.31 -39.58 -0.25 -1.30 16 21 Cl -0.09 -1.01 28.94 -51.86 -1.50 -2.51 16 22 C -0.07 -0.82 9.36 -39.42 -0.37 -1.19 16 23 C -0.12 -1.50 3.43 -104.80 -0.36 -1.86 16 24 C -0.01 -0.07 2.55 -92.73 -0.24 -0.31 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 26 C -0.15 -2.11 6.52 -35.40 -0.23 -2.34 16 27 C -0.14 -1.99 8.07 -35.09 -0.28 -2.27 16 28 C -0.09 -1.00 5.85 -25.99 -0.15 -1.15 16 29 C -0.10 -1.06 3.78 -89.17 -0.34 -1.40 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 C -0.05 -0.87 5.39 -39.61 -0.21 -1.09 16 32 C -0.20 -4.15 9.99 -39.40 -0.39 -4.54 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.12 2.60 5.64 -52.48 -0.30 2.30 16 35 H 0.10 1.42 7.83 -52.48 -0.41 1.01 16 36 H 0.40 3.52 8.90 -40.82 -0.36 3.16 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.79 8.02 -52.49 -0.42 1.37 16 41 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 42 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.07 0.83 6.66 -51.93 -0.35 0.48 16 44 H 0.12 2.02 3.51 -52.49 -0.18 1.84 16 45 H 0.11 2.37 8.06 -52.48 -0.42 1.94 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -30.26 365.30 -11.00 -41.25 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.23 Total: 10.63 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -5.22 Total: -32.24 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.47 Total: -32.97 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.26 -11.00 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408736222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.776 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds