Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47284 * 269.99947 * 3 2 1 5 5 H 1.48493 * 109.47123 * 30.00478 * 3 2 1 6 6 H 1.48503 * 109.46692 * 150.00384 * 3 2 1 7 7 C 1.38657 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99643 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00419 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00208 * 185.05834 * 9 7 2 11 11 C 1.38874 * 120.07080 * 354.46682 * 10 9 7 12 12 C 1.38095 * 119.93564 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06851 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.93562 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.56366 * 340.22953 * 14 13 12 16 16 N 1.46663 * 109.56551 * 220.00254 * 14 13 12 17 17 C 1.39982 * 118.34364 * 289.60052 * 16 14 13 18 18 C 1.38917 * 119.34332 * 160.16206 * 17 16 14 19 19 C 1.38063 * 120.04175 * 180.08855 * 18 17 16 20 20 C 1.38408 * 119.67793 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.86435 * 180.02562 * 20 19 18 22 22 C 1.38076 * 120.27097 * 0.02562 * 20 19 18 23 23 C 1.38619 * 120.15633 * 340.22685 * 17 16 14 24 24 C 1.49582 * 122.35737 * 359.88768 * 23 17 16 25 25 H 1.09003 * 109.55506 * 226.40114 * 24 23 17 26 26 C 1.51004 * 111.44337 * 105.00826 * 24 23 17 27 27 C 1.29254 * 111.29051 * 216.85028 * 26 24 23 28 28 C 1.51625 * 110.19959 * 359.63616 * 27 26 24 29 29 C 1.51873 * 108.96444 * 100.44471 * 14 13 12 30 30 H 1.09002 * 111.92771 * 188.72327 * 29 14 13 31 31 C 1.38304 * 120.13476 * 0.23736 * 13 12 11 32 32 C 1.38101 * 120.06875 * 359.48590 * 31 13 12 33 33 H 0.96992 * 119.99707 * 359.97438 * 1 2 3 34 34 H 1.08003 * 120.03557 * 0.02562 * 11 10 9 35 35 H 1.08003 * 119.97081 * 179.97438 * 12 11 10 36 36 H 0.97002 * 120.82546 * 109.58431 * 16 14 13 37 37 H 1.07998 * 119.97926 * 0.11312 * 18 17 16 38 38 H 1.07997 * 120.15886 * 179.97438 * 19 18 17 39 39 H 1.07995 * 119.72721 * 180.02562 * 22 20 19 40 40 H 1.08000 * 124.87436 * 36.99815 * 26 24 23 41 41 H 1.08001 * 125.05018 * 179.69251 * 27 26 24 42 42 H 1.09008 * 110.63209 * 263.21760 * 28 27 26 43 43 H 1.08996 * 110.63525 * 140.17740 * 28 27 26 44 44 H 1.07997 * 119.96535 * 179.72431 * 31 13 12 45 45 H 1.08004 * 120.03372 * 180.25379 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4571 -3.4396 0.0922 12 6 4.2024 -4.5971 0.2008 13 6 3.5687 -5.8204 0.3224 14 6 4.3849 -7.0817 0.4402 15 1 5.3933 -6.9000 0.0684 16 7 3.7565 -8.1486 -0.3460 17 6 2.5487 -8.6880 0.1118 18 6 1.7294 -9.3737 -0.7762 19 6 0.5341 -9.9100 -0.3406 20 6 0.1582 -9.7613 0.9831 21 17 -1.3433 -10.4343 1.5362 22 6 0.9727 -9.0798 1.8656 23 6 2.1767 -8.5363 1.4385 24 6 3.0269 -7.8072 2.4300 25 1 3.1010 -8.3920 3.3469 26 6 2.4609 -6.4432 2.7452 27 6 3.4010 -5.5717 2.9103 28 6 4.7578 -6.2262 2.7380 29 6 4.4406 -7.4991 1.8993 30 1 5.1422 -8.3172 2.0622 31 6 2.1874 -5.8890 0.3306 32 6 1.4366 -4.7345 0.2280 33 1 -0.4849 0.8400 0.0004 34 1 3.9526 -2.4846 -0.0023 35 1 5.2812 -4.5472 0.1900 36 1 4.1676 -8.4721 -1.1629 37 1 2.0279 -9.4876 -1.8078 38 1 -0.1044 -10.4431 -1.0294 39 1 0.6710 -8.9693 2.8966 40 1 1.4084 -6.2153 2.8270 41 1 3.2457 -4.5277 3.1390 42 1 5.1785 -6.4989 3.7060 43 1 5.4358 -5.5677 2.1952 44 1 1.6954 -6.8462 0.4211 45 1 0.3580 -4.7884 0.2386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408736222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = 52.551760 kcal Electronic energy + Delta-G solvation = -31150.999673 eV Core-core repulsion = 27125.185704 eV Total energy + Delta-G solvation = -4025.813970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 367.108 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.83091 -40.43923 -39.41001 -37.55929 -37.37734 -36.08638 -34.25759 -33.01520 -32.26005 -31.32767 -29.97546 -29.55634 -27.99837 -27.35673 -25.02511 -23.88165 -23.29274 -22.98620 -22.42372 -20.09984 -19.90747 -19.28167 -18.67226 -18.38544 -17.73015 -17.02802 -16.51192 -16.34510 -16.18283 -16.03302 -15.68487 -15.44454 -15.37762 -15.02633 -14.57930 -14.54240 -14.06281 -13.89131 -13.66492 -13.50057 -13.43878 -13.12045 -13.00676 -12.94608 -12.91076 -12.52493 -12.44064 -12.18386 -12.10936 -12.09846 -11.96010 -11.84287 -11.69668 -11.42657 -11.11388 -10.81552 -10.64857 -9.94470 -9.72751 -9.43208 -8.56538 -8.45621 -8.25348 -6.13349 0.34546 0.43664 0.66637 0.78041 1.33555 1.35592 1.42855 1.51243 1.65732 2.17801 2.53719 2.76179 2.90310 3.24837 3.58362 3.63913 3.66809 3.91483 3.96045 4.10073 4.14555 4.16792 4.26423 4.28894 4.42026 4.47905 4.51039 4.59076 4.69032 4.69584 4.83819 4.92190 4.96254 5.06820 5.09266 5.10928 5.12496 5.17631 5.23662 5.36537 5.37476 5.40089 5.46827 5.68683 5.71502 5.78743 5.82526 5.88401 6.06582 6.10517 6.31708 6.34914 6.99044 6.99741 7.84389 8.78184 Molecular weight = 367.11amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.003008 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.266286 B = 9304.769137 C =10430.614005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.408 4.408 8 H 0.102 0.898 9 O -0.240 6.240 10 C 0.119 3.881 11 C -0.242 4.242 12 C -0.054 4.054 13 C -0.156 4.156 14 C 0.213 3.787 15 H 0.124 0.876 16 N -0.732 5.732 17 C 0.223 3.777 18 C -0.183 4.183 19 C -0.074 4.074 20 C -0.100 4.100 21 Cl -0.089 7.089 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.004 4.004 25 H 0.101 0.899 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.083 4.083 29 C -0.087 4.087 30 H 0.123 0.877 31 C -0.041 4.041 32 C -0.215 4.215 33 H 0.271 0.729 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.416 0.584 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -21.595 2.649 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.223 4.223 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.485 4.485 8 H 0.119 0.881 9 O -0.147 6.147 10 C 0.069 3.931 11 C -0.262 4.262 12 C -0.072 4.072 13 C -0.158 4.158 14 C 0.108 3.892 15 H 0.142 0.858 16 N -0.362 5.362 17 C 0.119 3.881 18 C -0.205 4.205 19 C -0.093 4.093 20 C -0.128 4.128 21 Cl -0.060 7.060 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.022 4.022 25 H 0.119 0.881 26 C -0.179 4.179 27 C -0.175 4.175 28 C -0.120 4.120 29 C -0.106 4.106 30 H 0.141 0.859 31 C -0.059 4.059 32 C -0.234 4.234 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.254 0.746 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.153 0.847 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.132 -21.359 2.767 24.719 hybrid contribution -1.037 1.314 -0.224 1.689 sum 11.094 -20.045 2.544 23.051 Atomic orbital electron populations 1.70204 1.08119 1.28602 1.49444 1.26593 0.96801 1.02787 0.96106 0.84603 0.77867 0.74632 0.79223 1.18842 1.19816 1.17427 1.21804 0.92445 0.81458 1.52754 0.88056 1.83941 1.36256 1.12753 1.81800 1.19830 0.91780 0.87349 0.94149 1.21113 0.92607 1.00002 1.12439 1.20832 0.99663 0.90436 0.96255 1.19890 0.93244 0.95283 1.07351 1.19576 0.95705 0.82603 0.91343 0.85813 1.44678 1.22309 1.40043 1.29210 1.17688 0.87310 0.91800 0.91326 1.20877 0.94827 1.04655 1.00150 1.21002 0.96429 0.98331 0.93569 1.20645 0.90393 1.06344 0.95403 1.98336 1.33027 1.84560 1.90076 1.20917 0.93085 0.95869 0.99809 1.19068 0.97264 1.04461 0.93119 1.19359 0.93273 0.92731 0.96818 0.88084 1.22602 0.98092 0.95522 1.01673 1.22837 0.96843 0.97604 1.00261 1.21734 0.94626 0.95138 1.00525 1.22417 0.95873 0.98337 0.93924 0.85938 1.21084 0.94272 0.96261 0.94260 1.20278 0.98719 0.91314 1.13092 0.92038 0.86844 0.83653 0.74598 0.83275 0.83766 0.85148 0.89019 0.88894 0.88876 0.90037 0.84716 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.13 13.67 21.61 0.30 -57.84 16 2 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 3 Si 1.02 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 7 C -0.41 -24.07 9.49 67.92 0.64 -23.42 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 9 O -0.24 -14.82 9.76 -22.68 -0.22 -15.05 16 10 C 0.12 5.96 6.65 22.58 0.15 6.11 16 11 C -0.24 -10.15 9.17 22.39 0.21 -9.94 16 12 C -0.05 -1.63 7.64 22.25 0.17 -1.46 16 13 C -0.16 -4.30 2.80 -19.83 -0.06 -4.35 16 14 C 0.21 3.81 3.15 43.84 0.14 3.95 16 15 H 0.12 1.53 8.00 -2.39 -0.02 1.51 16 16 N -0.73 -12.24 5.41 -323.92 -1.75 -13.99 16 17 C 0.22 4.56 4.48 38.09 0.17 4.74 16 18 C -0.18 -3.52 9.90 22.39 0.22 -3.30 16 19 C -0.07 -1.52 9.84 22.27 0.22 -1.30 16 20 C -0.10 -2.29 6.31 22.27 0.14 -2.15 16 21 Cl -0.09 -2.00 28.94 -2.72 -0.08 -2.07 16 22 C -0.08 -1.79 9.36 22.37 0.21 -1.58 16 23 C -0.13 -2.97 3.43 -19.98 -0.07 -3.04 16 24 C 0.00 -0.08 2.55 -12.16 -0.03 -0.11 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 C -0.16 -4.35 6.52 27.51 0.18 -4.17 16 27 C -0.16 -4.25 8.07 27.71 0.22 -4.03 16 28 C -0.08 -1.51 5.85 31.08 0.18 -1.32 16 29 C -0.09 -1.40 3.78 -9.86 -0.04 -1.44 16 30 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 31 C -0.04 -1.41 5.39 22.25 0.12 -1.29 16 32 C -0.21 -9.62 9.99 22.39 0.22 -9.39 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.11 4.90 5.64 -2.91 -0.02 4.88 16 35 H 0.15 3.25 7.83 -2.91 -0.02 3.23 16 36 H 0.42 4.93 8.90 -92.71 -0.83 4.11 16 37 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.09 2.94 8.02 -2.91 -0.02 2.92 16 41 H 0.09 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.08 1.40 6.66 -2.39 -0.02 1.38 16 44 H 0.14 4.34 3.51 -2.91 -0.01 4.32 16 45 H 0.09 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -74.00 365.30 3.97 -70.03 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.23 Total: 32.06 kcal Atomic # 6 Polarization: -62.01 SS G_CDS: 3.47 Total: -58.54 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.46 Total: -71.83 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.22 Total: -15.05 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.08 Total: -2.07 kcal Total: -74.00 3.97 -70.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408736222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.579 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds