Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86799 * 119.99926 * 2 1 4 4 H 1.48499 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47019 * 299.99977 * 3 2 1 6 6 H 1.48498 * 109.46953 * 60.00187 * 3 2 1 7 7 C 1.38648 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99728 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99708 * 359.97438 * 7 2 1 10 10 C 1.35612 * 116.99684 * 185.08031 * 9 7 2 11 11 C 1.38726 * 120.15718 * 354.41690 * 10 9 7 12 12 C 1.38112 * 120.08245 * 179.97438 * 11 10 9 13 13 C 1.38529 * 120.40807 * 0.02562 * 12 11 10 14 14 C 1.37891 * 120.31344 * 359.97438 * 13 12 11 15 15 C 1.39684 * 119.90875 * 0.02562 * 14 13 12 16 16 C 1.47305 * 120.19611 * 179.72487 * 15 14 13 17 17 N 1.29848 * 119.99409 * 180.02562 * 16 15 14 18 18 N 1.40104 * 119.99284 * 180.02562 * 17 16 15 19 19 C 1.34778 * 119.99333 * 179.97438 * 18 17 16 20 20 O 1.21307 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.99474 * 179.97438 * 19 18 17 22 22 N 1.46507 * 109.46792 * 180.02562 * 21 19 18 23 23 C 1.34772 * 119.99704 * 180.02562 * 22 21 19 24 24 O 1.21555 * 120.00101 * 359.97438 * 23 22 21 25 25 C 1.47845 * 120.00144 * 180.02562 * 23 22 21 26 26 C 1.39580 * 120.13876 * 359.71229 * 25 23 22 27 27 C 1.37966 * 119.84863 * 179.75062 * 26 25 23 28 28 C 1.38353 * 120.14461 * 0.53301 * 27 26 25 29 29 C 1.38360 * 120.29675 * 359.74503 * 28 27 26 30 30 C 1.37960 * 120.14143 * 359.97438 * 29 28 27 31 31 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.95885 * 359.95610 * 11 10 9 33 33 H 1.08002 * 119.79648 * 180.02562 * 12 11 10 34 34 H 1.07999 * 119.84344 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.04192 * 180.02562 * 14 13 12 36 36 H 1.07995 * 119.99933 * 0.02562 * 16 15 14 37 37 H 0.96993 * 120.00251 * 359.97438 * 18 17 16 38 38 H 1.08997 * 109.47545 * 300.00355 * 21 19 18 39 39 H 1.09005 * 109.46894 * 60.00649 * 21 19 18 40 40 H 0.96994 * 120.00156 * 0.02562 * 22 21 19 41 41 H 1.07998 * 120.08048 * 0.02562 * 26 25 23 42 42 H 1.08004 * 119.92617 * 180.28302 * 27 26 25 43 43 H 1.08006 * 119.85380 * 179.72086 * 28 27 26 44 44 H 1.07993 * 119.93297 * 179.97438 * 29 28 27 45 45 H 1.08003 * 120.07480 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0693 -3.5031 0.1059 11 6 3.4550 -3.4403 0.0921 12 6 4.2016 -4.5971 0.2012 13 6 3.5755 -5.8267 0.3244 14 6 2.1991 -5.9084 0.3400 15 6 1.4311 -4.7467 0.2306 16 6 -0.0397 -4.8272 0.2404 17 7 -0.7497 -3.7449 0.1379 18 7 -2.1486 -3.8215 0.1478 19 6 -2.8856 -2.6980 0.0420 20 8 -2.3378 -1.6207 -0.0623 21 6 -4.3904 -2.7804 0.0521 22 7 -4.9539 -1.4341 -0.0759 23 6 -6.2905 -1.2617 -0.0899 24 8 -7.0284 -2.2231 0.0031 25 6 -6.8593 0.0968 -0.2195 26 6 -6.0148 1.2034 -0.3216 27 6 -6.5520 2.4679 -0.4475 28 6 -7.9245 2.6415 -0.4617 29 6 -8.7673 1.5493 -0.3551 30 6 -8.2431 0.2789 -0.2345 31 1 -0.4850 0.8400 -0.0004 32 1 3.9507 -2.4856 -0.0043 33 1 5.2802 -4.5428 0.1904 34 1 4.1682 -6.7255 0.4095 35 1 1.7155 -6.8692 0.4366 36 1 -0.5273 -5.7863 0.3328 37 1 -2.5866 -4.6829 0.2308 38 1 -4.7263 -3.3953 -0.7828 39 1 -4.7236 -3.2266 0.9891 40 1 -4.3651 -0.6669 -0.1504 41 1 -4.9432 1.0698 -0.3065 42 1 -5.8996 3.3246 -0.5311 43 1 -8.3400 3.6339 -0.5559 44 1 -9.8378 1.6916 -0.3664 45 1 -8.9019 -0.5728 -0.1509 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408811656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = 20.885537 kcal Electronic energy + Delta-G solvation = -31217.554114 eV Core-core repulsion = 26781.950580 eV Total energy + Delta-G solvation = -4435.603534 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36972 -39.16043 -38.91742 -38.15707 -36.36524 -35.75625 -34.39509 -32.43473 -32.08172 -31.53315 -31.12479 -29.73619 -28.71714 -27.35065 -25.29396 -23.92369 -23.00525 -22.57033 -21.53245 -20.52882 -20.29624 -19.95662 -18.54933 -17.87785 -17.16357 -16.64100 -16.37212 -15.94443 -15.77198 -15.75148 -15.03765 -14.86119 -14.59198 -14.49140 -14.40289 -14.09144 -13.86079 -13.63661 -13.59089 -13.47395 -12.99290 -12.91095 -12.65972 -12.50563 -12.40734 -11.88691 -11.67838 -11.59997 -11.29791 -11.14754 -10.83173 -10.81382 -10.67440 -10.39146 -10.11477 -9.54351 -9.41857 -9.34088 -9.20861 -9.07375 -9.02962 -8.96145 -8.72086 -7.72541 -6.98031 -6.23501 -3.86694 0.66050 1.15398 1.65318 2.43732 2.68583 2.73463 2.87290 3.16607 3.18151 3.22174 3.36166 3.52011 3.70871 4.02146 4.53203 4.62619 4.68943 4.72829 4.77858 4.92653 5.15955 5.17535 5.24908 5.26750 5.31576 5.33209 5.33510 5.53123 5.59826 5.68749 5.76552 5.87116 6.07070 6.10694 6.16502 6.20536 6.22099 6.25683 6.48250 6.65530 6.72632 6.85317 7.12574 7.23133 7.38855 7.41263 7.43480 7.61879 7.83319 8.05156 8.08936 8.21820 9.03527 9.10526 9.79766 10.81894 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.010699 B = 0.002386 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.324389 B =11734.402940 C =14330.371076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.045 3.955 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.407 4.407 8 H 0.089 0.911 9 O -0.115 6.115 10 C 0.165 3.835 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.229 4.229 14 C -0.042 4.042 15 C -0.149 4.149 16 C 0.100 3.900 17 N -0.183 5.183 18 N -0.591 5.591 19 C 0.497 3.503 20 O -0.434 6.434 21 C 0.107 3.893 22 N -0.708 5.708 23 C 0.562 3.438 24 O -0.545 6.545 25 C -0.134 4.134 26 C -0.081 4.081 27 C -0.127 4.127 28 C -0.096 4.096 29 C -0.132 4.132 30 C -0.061 4.061 31 H 0.266 0.734 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.369 0.631 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.415 0.585 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.424 -1.590 -0.123 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.165 4.165 3 Si 0.753 3.247 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.483 4.483 8 H 0.106 0.894 9 O -0.011 6.011 10 C 0.105 3.895 11 C -0.256 4.256 12 C -0.080 4.080 13 C -0.248 4.248 14 C -0.063 4.063 15 C -0.153 4.153 16 C -0.108 4.108 17 N 0.011 4.989 18 N -0.334 5.334 19 C 0.280 3.720 20 O -0.299 6.299 21 C -0.022 4.022 22 N -0.364 5.364 23 C 0.350 3.650 24 O -0.424 6.424 25 C -0.137 4.137 26 C -0.100 4.100 27 C -0.144 4.144 28 C -0.114 4.114 29 C -0.150 4.150 30 C -0.080 4.080 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.206 0.794 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.255 0.745 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.184 -0.167 -0.261 12.188 hybrid contribution 0.570 -0.265 0.111 0.638 sum -11.615 -0.432 -0.150 11.624 Atomic orbital electron populations 1.70293 1.04759 1.26720 1.40100 1.25333 0.95901 0.98343 0.96936 0.85863 0.79396 0.81382 0.78056 1.19271 1.20337 1.20341 1.21395 0.91668 0.81231 1.53991 0.89358 1.84172 1.33154 1.10743 1.73075 1.19442 0.89948 0.87841 0.92284 1.21127 0.93686 0.99067 1.11748 1.20844 0.98437 0.92435 0.96287 1.20404 0.94032 0.96949 1.13462 1.20642 0.93502 0.95482 0.96697 1.17324 0.88931 0.91637 1.17443 1.24257 0.94024 0.93551 0.99016 1.75938 0.86842 1.24053 1.12111 1.46964 1.03589 1.08696 1.74177 1.20192 0.87855 0.84794 0.79167 1.91077 1.71196 1.25875 1.41799 1.20986 0.91019 0.85819 1.04348 1.45641 1.06939 1.09783 1.74014 1.18226 0.81685 0.88824 0.76309 1.90753 1.59469 1.41694 1.50436 1.19898 0.94600 0.92648 1.06528 1.21517 1.00121 0.92259 0.96118 1.21173 0.95410 0.97249 1.00615 1.21397 0.93666 0.99079 0.97257 1.21147 1.00156 0.92292 1.01426 1.21270 0.93748 0.97828 0.95122 0.92415 0.85485 0.87601 0.87530 0.86884 0.88189 0.79420 0.88571 0.88569 0.74453 0.84920 0.85175 0.85615 0.85382 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.45 12.59 55.48 0.70 -21.75 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.41 -11.21 9.49 30.88 0.29 -10.92 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 9 O -0.11 -3.19 7.64 0.55 0.00 -3.18 16 10 C 0.17 3.94 6.66 -38.62 -0.26 3.68 16 11 C -0.24 -5.08 9.16 -39.45 -0.36 -5.44 16 12 C -0.06 -1.08 10.03 -39.52 -0.40 -1.48 16 13 C -0.23 -3.77 10.03 -39.60 -0.40 -4.17 16 14 C -0.04 -0.71 9.79 -39.17 -0.38 -1.09 16 15 C -0.15 -3.03 5.88 -104.88 -0.62 -3.65 16 16 C 0.10 1.88 10.75 -14.70 -0.16 1.72 16 17 N -0.18 -4.00 8.90 32.13 0.29 -3.72 16 18 N -0.59 -10.23 6.26 31.22 0.20 -10.03 16 19 C 0.50 8.95 8.02 -10.98 -0.09 8.86 16 20 O -0.43 -10.01 14.92 5.53 0.08 -9.92 16 21 C 0.11 1.46 6.15 -5.19 -0.03 1.43 16 22 N -0.71 -10.10 5.48 -62.42 -0.34 -10.44 16 23 C 0.56 8.09 7.77 -12.33 -0.10 8.00 16 24 O -0.54 -9.00 16.35 5.32 0.09 -8.91 16 25 C -0.13 -1.67 5.87 -104.97 -0.62 -2.29 16 26 C -0.08 -0.93 9.54 -39.18 -0.37 -1.30 16 27 C -0.13 -1.22 10.03 -39.64 -0.40 -1.62 16 28 C -0.10 -0.81 10.04 -39.49 -0.40 -1.21 16 29 C -0.13 -1.17 10.03 -39.64 -0.40 -1.56 16 30 C -0.06 -0.67 9.60 -39.18 -0.38 -1.04 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.10 1.40 8.02 -52.49 -0.42 0.98 16 37 H 0.37 4.61 8.65 -182.60 -1.58 3.03 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.42 6.12 5.47 -40.82 -0.22 5.89 16 41 H 0.13 1.49 6.41 -52.49 -0.34 1.16 16 42 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.14 1.44 7.65 -52.48 -0.40 1.03 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -35.61 397.33 -9.22 -44.83 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.05 Total: 12.73 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -5.15 Total: -10.94 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.84 Total: -45.93 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.17 Total: -22.02 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.61 -9.22 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408811656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.711 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds