Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00359 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00320 * 3 2 1 5 5 H 1.48503 * 109.46779 * 29.99657 * 3 2 1 6 6 H 1.48497 * 109.47240 * 150.00200 * 3 2 1 7 7 C 1.38703 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00302 * 359.97438 * 7 2 1 9 9 O 1.34778 * 120.00006 * 179.97438 * 7 2 1 10 10 C 1.35517 * 116.99807 * 185.10642 * 9 7 2 11 11 C 1.38742 * 120.18202 * 355.49676 * 10 9 7 12 12 C 1.38083 * 120.10880 * 180.02562 * 11 10 9 13 13 C 1.38633 * 120.46659 * 0.02562 * 12 11 10 14 14 C 1.37740 * 120.36009 * 359.69197 * 13 12 11 15 15 C 1.39995 * 119.88524 * 0.56005 * 14 13 12 16 16 C 1.46711 * 120.23605 * 179.74200 * 15 14 13 17 17 C 1.35821 * 119.99367 * 327.44678 * 16 15 14 18 18 S 1.77482 * 127.96769 * 353.35683 * 17 16 15 19 19 C 1.77224 * 94.56724 * 180.02562 * 18 17 16 20 20 O 1.21635 * 126.56125 * 179.97438 * 19 18 17 21 21 N 1.33801 * 106.88531 * 0.02562 * 19 18 17 22 22 C 1.40160 * 120.24091 * 180.02562 * 21 19 18 23 23 C 1.38831 * 120.06499 * 112.73041 * 22 21 19 24 24 C 1.38129 * 119.93263 * 179.97438 * 23 22 21 25 25 C 1.38272 * 120.06703 * 359.97438 * 24 23 22 26 26 C 1.38278 * 120.13092 * 0.02562 * 25 24 23 27 27 C 1.38121 * 120.07023 * 359.97438 * 26 25 24 28 28 C 1.32257 * 119.50868 * 0.27351 * 21 19 18 29 29 O 1.21721 * 122.51013 * 179.70837 * 28 21 19 30 30 H 0.96997 * 119.99454 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.95071 * 0.04205 * 11 10 9 32 32 H 1.07997 * 119.76720 * 179.97438 * 12 11 10 33 33 H 1.08007 * 119.81955 * 179.97438 * 13 12 11 34 34 H 1.07999 * 120.05919 * 180.27675 * 14 13 12 35 35 H 1.07997 * 120.00337 * 147.44475 * 16 15 14 36 36 H 1.08001 * 120.03827 * 359.69519 * 23 22 21 37 37 H 1.08008 * 119.96576 * 179.97438 * 24 23 22 38 38 H 1.08002 * 119.93477 * 180.02562 * 25 24 23 39 39 H 1.08001 * 119.96502 * 179.97438 * 26 25 24 40 40 H 1.07998 * 120.03603 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5469 1.4401 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 1.4688 -2.1365 -0.0005 9 8 3.3565 -1.2012 -0.0011 10 6 3.9716 -2.4039 -0.1090 11 6 3.2229 -3.5719 -0.1188 12 6 3.8513 -4.7966 -0.2284 13 6 5.2319 -4.8717 -0.3289 14 6 5.9936 -3.7241 -0.3269 15 6 5.3724 -2.4749 -0.2112 16 6 6.1767 -1.2478 -0.2026 17 6 7.4217 -1.2559 0.3401 18 16 8.2158 -2.5692 1.2315 19 6 9.7160 -1.6664 1.5061 20 8 10.7016 -2.0621 2.0989 21 7 9.5566 -0.4657 0.9376 22 6 10.5876 0.4824 0.9895 23 6 11.2474 0.8567 -0.1733 24 6 12.2627 1.7917 -0.1191 25 6 12.6218 2.3550 1.0915 26 6 11.9665 1.9841 2.2513 27 6 10.9504 1.0497 2.2035 28 6 8.4172 -0.1784 0.3307 29 8 8.2116 0.8978 -0.1996 30 1 -0.4849 0.8401 -0.0004 31 1 2.1468 -3.5233 -0.0409 32 1 3.2632 -5.7023 -0.2351 33 1 5.7126 -5.8352 -0.4137 34 1 7.0685 -3.7881 -0.4099 35 1 5.7787 -0.3383 -0.6278 36 1 10.9701 0.4141 -1.1186 37 1 12.7766 2.0830 -1.0233 38 1 13.4157 3.0861 1.1314 39 1 12.2494 2.4255 3.1955 40 1 10.4387 0.7608 3.1096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408818667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = 8.082022 kcal Electronic energy + Delta-G solvation = -28933.727330 eV Core-core repulsion = 24772.195620 eV Total energy + Delta-G solvation = -4161.531710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.071 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.08505 -39.68122 -38.90241 -38.71647 -37.03813 -35.83378 -34.02610 -32.74981 -31.28381 -31.25326 -29.66029 -29.09990 -25.75350 -25.29008 -25.06152 -23.05176 -22.71065 -21.67372 -21.06604 -19.67593 -18.75407 -18.25722 -18.14465 -17.46925 -16.93443 -16.65909 -15.98066 -15.65222 -15.30605 -15.02046 -14.88188 -14.53873 -14.36331 -14.31348 -14.13026 -14.01410 -13.80043 -13.74441 -13.03471 -12.94047 -12.73409 -12.50134 -12.15642 -11.92600 -11.66915 -11.65912 -11.20926 -11.15710 -11.03252 -10.84020 -10.65180 -10.46349 -10.42309 -9.96574 -9.73764 -9.25625 -9.17939 -9.05285 -8.81392 -8.03921 -7.49737 -6.75177 -4.39524 0.33684 0.69954 0.91233 1.08192 1.43906 1.62431 1.98941 2.16955 2.55293 2.87925 3.05799 3.10986 3.23631 3.42462 3.98392 4.12038 4.18165 4.36864 4.60273 4.62243 4.71843 4.78715 4.83155 5.08185 5.08696 5.20212 5.26180 5.41828 5.59001 5.66223 5.66942 5.73836 5.84744 6.04973 6.05868 6.07760 6.16809 6.17887 6.36459 6.50368 6.58352 6.76033 6.81896 6.82881 6.95003 7.24034 7.43635 7.48953 7.67058 8.56583 9.12159 10.29974 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.003060 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.357831 B = 9147.589157 C =11160.059892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.392 4.392 8 H 0.114 0.886 9 O -0.191 6.191 10 C 0.190 3.810 11 C -0.220 4.220 12 C -0.046 4.046 13 C -0.206 4.206 14 C -0.040 4.040 15 C -0.194 4.194 16 C 0.139 3.861 17 C -0.292 4.292 18 S 0.004 5.996 19 C 0.516 3.484 20 O -0.441 6.441 21 N -0.528 5.528 22 C 0.112 3.888 23 C -0.093 4.093 24 C -0.110 4.110 25 C -0.109 4.109 26 C -0.110 4.110 27 C -0.097 4.097 28 C 0.563 3.437 29 O -0.472 6.472 30 H 0.286 0.714 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.294 -1.276 0.617 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.466 4.466 8 H 0.131 0.869 9 O -0.093 6.093 10 C 0.134 3.866 11 C -0.239 4.239 12 C -0.065 4.065 13 C -0.225 4.225 14 C -0.059 4.059 15 C -0.196 4.196 16 C 0.113 3.887 17 C -0.407 4.407 18 S 0.241 5.759 19 C 0.199 3.801 20 O -0.314 6.314 21 N -0.270 5.270 22 C 0.021 3.979 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.116 4.116 28 C 0.354 3.646 29 O -0.345 6.345 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.206 -1.746 1.068 18.321 hybrid contribution 0.332 1.850 -0.325 1.907 sum 18.538 0.104 0.743 18.553 Atomic orbital electron populations 1.69606 1.05747 1.29358 1.44487 1.24534 0.95076 0.99170 0.94788 0.86257 0.80666 0.81059 0.79648 1.19231 1.20197 1.17839 1.20889 0.76214 0.97103 1.52439 0.86887 1.83466 1.23351 1.26036 1.76413 1.19113 0.90136 0.85697 0.91663 1.21285 1.01464 0.91581 1.09555 1.21089 0.94410 0.96948 0.94021 1.20635 0.93844 0.97583 1.10429 1.21072 0.99068 0.90798 0.94973 1.17892 0.90160 0.92357 1.19235 1.21890 0.87025 0.97277 0.82487 1.23049 1.01270 0.97366 1.19005 1.86388 1.08586 1.17775 1.63193 1.22872 0.93553 0.83396 0.80292 1.90884 1.31348 1.69766 1.39446 1.44121 1.15699 1.15063 1.52159 1.17672 0.91453 0.93680 0.95062 1.21134 0.95106 0.97789 0.97252 1.21047 0.96907 0.96506 0.98430 1.21280 0.99567 0.99419 0.92482 1.21038 0.95681 0.97172 0.98963 1.21143 0.97861 0.95993 0.96646 1.17610 0.81000 0.88132 0.77849 1.90900 1.78349 1.23730 1.41541 0.90344 0.84152 0.86431 0.86455 0.85390 0.82964 0.85507 0.85061 0.85332 0.85059 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.63 13.96 55.48 0.77 -21.85 16 2 C 0.07 1.82 5.49 -17.51 -0.10 1.72 16 3 Si 0.90 19.96 28.62 -169.99 -4.86 15.09 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.25 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -9.82 9.94 30.90 0.31 -9.51 16 8 H 0.11 2.86 5.43 -52.49 -0.29 2.57 16 9 O -0.19 -4.41 8.00 0.91 0.01 -4.40 16 10 C 0.19 3.81 6.67 -38.49 -0.26 3.55 16 11 C -0.22 -4.05 9.16 -39.45 -0.36 -4.41 16 12 C -0.05 -0.70 10.03 -39.49 -0.40 -1.09 16 13 C -0.21 -2.93 10.02 -39.62 -0.40 -3.33 16 14 C -0.04 -0.60 8.44 -39.11 -0.33 -0.93 16 15 C -0.19 -3.40 5.69 -104.91 -0.60 -4.00 16 16 C 0.14 2.34 9.35 -37.03 -0.35 2.00 16 17 C -0.29 -4.65 6.28 -37.03 -0.23 -4.88 16 18 S 0.00 0.06 19.72 -107.50 -2.12 -2.07 16 19 C 0.52 7.81 8.25 53.62 0.44 8.25 16 20 O -0.44 -7.25 17.51 5.25 0.09 -7.16 16 21 N -0.53 -8.03 2.56 -64.69 -0.17 -8.19 16 22 C 0.11 1.59 4.56 -83.61 -0.38 1.21 16 23 C -0.09 -1.16 9.51 -39.40 -0.37 -1.53 16 24 C -0.11 -1.08 10.04 -39.61 -0.40 -1.48 16 25 C -0.11 -0.97 10.04 -39.55 -0.40 -1.37 16 26 C -0.11 -1.08 10.04 -39.61 -0.40 -1.48 16 27 C -0.10 -1.21 9.67 -39.40 -0.38 -1.59 16 28 C 0.56 9.29 7.48 -13.95 -0.10 9.19 16 29 O -0.47 -8.79 16.94 5.17 0.09 -8.71 16 30 H 0.29 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.14 2.69 5.63 -52.48 -0.30 2.39 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.13 1.73 5.80 -50.15 -0.29 1.44 16 35 H 0.15 2.62 8.00 -52.49 -0.42 2.20 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -28.30 368.87 -8.71 -37.02 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -3.39 Total: 4.39 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -4.70 Total: -9.69 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.61 Total: -30.05 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.19 Total: -20.27 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.86 Total: 15.09 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.12 Total: -2.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.30 -8.71 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408818667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.098 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds