Wall clock time and date at job start Tue Mar 31 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35954 * 116.99852 * 2 1 4 4 C 1.37979 * 120.05082 * 359.73192 * 3 2 1 5 5 C 1.40317 * 119.68621 * 179.72966 * 4 3 2 6 6 C 1.46319 * 120.10086 * 180.28828 * 5 4 3 7 7 C 1.38043 * 119.99828 * 151.72716 * 6 5 4 8 8 C 1.43199 * 119.99955 * 352.75503 * 7 6 5 9 9 N 6.65810 * 111.58337 * 17.63891 * 2 1 3 10 10 C 1.46844 * 119.99632 * 172.74619 * 7 6 5 11 11 O 1.21574 * 120.00664 * 0.02562 * 10 7 6 12 12 N 1.34784 * 119.99755 * 180.02562 * 10 7 6 13 13 N 1.40095 * 126.11659 * 0.03108 * 12 10 7 14 14 C 1.30702 * 108.26923 * 179.97438 * 13 12 10 15 15 C 1.50696 * 125.79503 * 180.02562 * 14 13 12 16 16 C 1.40149 * 108.41039 * 359.97438 * 14 13 12 17 17 C 1.35122 * 107.97538 * 359.77186 * 16 14 13 18 18 C 1.50703 * 126.20798 * 180.24843 * 17 16 14 19 19 C 1.40327 * 119.79632 * 0.53728 * 5 4 3 20 20 C 1.36521 * 120.09816 * 359.73227 * 19 5 4 21 21 C 1.39161 * 120.31360 * 0.02562 * 20 19 5 22 22 O 1.35528 * 119.89198 * 179.97438 * 21 20 19 23 23 C 1.34714 * 117.00422 * 353.91834 * 22 21 20 24 24 H 1.07997 * 120.00021 * 5.09841 * 23 22 21 25 25 C 1.38778 * 119.99815 * 185.09049 * 23 22 21 26 26 N 1.31475 * 119.99447 * 180.02562 * 25 23 22 27 27 Si 1.86796 * 120.00501 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47349 * 89.99369 * 27 25 23 29 29 H 1.48498 * 109.47098 * 209.99823 * 27 25 23 30 30 H 1.48502 * 109.46726 * 329.99530 * 27 25 23 31 31 H 1.09003 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47511 * 59.99778 * 1 2 3 33 33 H 1.08999 * 109.47348 * 299.99863 * 1 2 3 34 34 H 1.08000 * 120.15171 * 359.97438 * 4 3 2 35 35 H 1.07993 * 119.99836 * 331.73695 * 6 5 4 36 36 H 1.08997 * 109.47479 * 89.97418 * 15 14 13 37 37 H 1.09002 * 109.47215 * 209.97657 * 15 14 13 38 38 H 1.09003 * 109.47225 * 329.97105 * 15 14 13 39 39 H 1.07997 * 126.01344 * 180.02562 * 16 14 13 40 40 H 1.09001 * 109.46522 * 270.13544 * 18 17 16 41 41 H 1.08992 * 109.47316 * 30.13836 * 18 17 16 42 42 H 1.09000 * 109.46696 * 150.14618 * 18 17 16 43 43 H 1.07997 * 119.95105 * 179.70308 * 19 5 4 44 44 H 1.07998 * 119.84154 * 179.97438 * 20 19 5 45 45 H 0.97000 * 119.99784 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2957 2.3692 -0.0056 5 6 1.9406 3.6154 0.0002 6 6 1.1536 4.8489 0.0007 7 6 1.6680 5.9955 0.5720 8 6 2.9005 5.9423 1.2992 9 7 3.8782 5.9002 1.8761 10 6 0.9513 7.2697 0.4339 11 8 -0.0952 7.3148 -0.1832 12 7 1.4537 8.3893 0.9913 13 7 2.6432 8.4842 1.7254 14 6 2.7952 9.7269 2.1004 15 6 3.9439 10.2686 2.9116 16 6 1.7091 10.4705 1.6192 17 6 0.8994 9.6317 0.9360 18 6 -0.3856 10.0033 0.2420 19 6 3.3426 3.6750 0.0002 20 6 4.0768 2.5240 0.0001 21 6 3.4417 1.2858 -0.0005 22 8 4.1790 0.1486 -0.0011 23 6 5.5132 0.2846 -0.1283 24 1 5.9568 1.2692 -0.1409 25 6 6.3175 -0.8405 -0.2428 26 7 7.6197 -0.7076 -0.3664 27 14 5.5503 -2.5434 -0.2215 28 1 5.2102 -2.9506 -1.6084 29 1 6.5144 -3.5135 0.3569 30 1 4.3162 -2.5200 0.6042 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 0.2170 2.3165 -0.0104 35 1 0.1704 4.8623 -0.4457 36 1 4.7388 10.5966 2.2419 37 1 3.6005 11.1132 3.5090 38 1 4.3233 9.4878 3.5708 39 1 1.5496 11.5287 1.7648 40 1 -1.2180 9.8975 0.9378 41 1 -0.3278 11.0362 -0.1011 42 1 -0.5406 9.3446 -0.6126 43 1 3.8416 4.6328 -0.0002 44 1 5.1556 2.5747 -0.0003 45 1 8.1820 -1.4940 -0.4468 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408980437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:36 Heat of formation + Delta-G solvation = 67.527601 kcal Electronic energy + Delta-G solvation = -31564.244307 eV Core-core repulsion = 27130.663325 eV Total energy + Delta-G solvation = -4433.580982 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.136 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.16211 -40.11660 -39.26814 -38.07394 -37.39086 -35.76497 -33.76521 -33.34325 -32.78366 -32.30488 -30.02740 -29.48119 -28.78600 -27.38252 -26.94846 -25.89185 -24.30426 -22.66052 -21.79192 -21.08540 -20.56336 -19.95676 -18.45437 -18.27670 -17.65457 -16.75958 -16.44603 -16.03729 -15.69841 -15.49216 -14.97079 -14.82637 -14.48877 -14.28953 -14.16081 -14.03807 -13.98802 -13.70704 -13.66084 -13.57259 -13.45661 -12.91868 -12.81307 -12.66216 -12.62346 -12.50160 -12.47626 -12.23568 -12.02621 -11.93944 -11.67234 -11.22820 -11.06457 -10.98291 -10.88531 -10.76104 -10.46035 -10.37311 -9.81112 -9.71796 -9.48097 -9.08524 -9.02509 -8.26490 -7.25356 -6.79317 -4.33164 0.10455 1.00703 1.92588 2.09302 2.13682 2.40390 2.74489 3.06118 3.10245 3.21264 3.26420 3.65441 3.84374 3.87485 3.99189 4.18354 4.28243 4.28308 4.35303 4.64678 4.77575 4.81713 5.07092 5.09003 5.19238 5.25551 5.27667 5.28387 5.33542 5.34543 5.36309 5.41310 5.56630 5.59976 5.64099 5.67084 5.80296 5.89343 5.92877 6.06917 6.22727 6.24486 6.52797 6.58277 6.69892 6.96151 7.14535 7.15398 7.32176 7.57031 7.59529 7.83377 8.07160 8.51302 9.12234 10.24673 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002275 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.606349 B =12306.333125 C =13977.284724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.049 3.951 4 C -0.120 4.120 5 C -0.195 4.195 6 C 0.123 3.877 7 C -0.193 4.193 8 C 0.272 3.728 9 N -0.416 5.416 10 C 0.616 3.384 11 O -0.493 6.493 12 N -0.370 5.370 13 N -0.268 5.268 14 C 0.105 3.895 15 C -0.078 4.078 16 C -0.253 4.253 17 C 0.104 3.896 18 C -0.099 4.099 19 C -0.040 4.040 20 C -0.212 4.212 21 C 0.164 3.836 22 O -0.171 6.171 23 C -0.382 4.382 24 H 0.116 0.884 25 C 0.068 3.932 26 N -0.848 5.848 27 Si 0.908 3.092 28 H -0.268 1.268 29 H -0.277 1.277 30 H -0.252 1.252 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.145 0.855 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.295 16.578 1.349 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.004 3.996 4 C -0.140 4.140 5 C -0.197 4.197 6 C 0.100 3.900 7 C -0.201 4.201 8 C -0.042 4.042 9 N -0.093 5.093 10 C 0.412 3.588 11 O -0.366 6.366 12 N -0.167 5.167 13 N -0.088 5.088 14 C -0.067 4.067 15 C -0.137 4.137 16 C -0.279 4.279 17 C -0.013 4.013 18 C -0.156 4.156 19 C -0.059 4.059 20 C -0.231 4.231 21 C 0.106 3.894 22 O -0.071 6.071 23 C -0.456 4.456 24 H 0.133 0.867 25 C -0.140 4.140 26 N -0.481 5.481 27 Si 0.732 3.268 28 H -0.193 1.193 29 H -0.203 1.203 30 H -0.175 1.175 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.175 0.825 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.681 14.654 1.819 20.130 hybrid contribution -0.932 0.433 -0.233 1.054 sum -14.613 15.088 1.586 21.064 Atomic orbital electron populations 1.22960 0.79688 1.03321 1.00737 1.86181 1.20033 1.26114 1.89890 1.17952 0.89084 0.84755 1.07784 1.20862 0.98765 0.90350 1.04004 1.18115 0.92847 0.91249 1.17457 1.23052 0.96223 0.88718 0.81992 1.17328 0.95646 0.93526 1.13559 1.24684 0.92420 0.93534 0.93585 1.81141 1.10862 1.07406 1.09854 1.17585 0.83268 0.81825 0.76085 1.90801 1.21703 1.84979 1.39076 1.47150 1.19199 1.07630 1.42756 1.77639 0.99121 1.19430 1.12591 1.22810 0.96728 0.90808 0.96346 1.20299 0.93619 1.01224 0.98526 1.21444 0.97159 1.01342 1.07995 1.21690 0.97227 0.84586 0.97769 1.20691 0.90963 1.02914 1.01076 1.21057 0.92353 0.98293 0.94230 1.20687 1.01506 0.90360 1.10557 1.18732 0.87725 0.86754 0.96141 1.83521 1.20763 1.28168 1.74659 1.21095 0.77097 0.97578 1.49788 0.86705 1.24632 0.94555 1.00161 0.94679 1.69600 1.03368 1.32687 1.42421 0.86115 0.80040 0.80785 0.79899 1.19290 1.20270 1.17534 0.88841 0.93089 0.93176 0.85112 0.83189 0.89839 0.89970 0.90245 0.82504 0.89791 0.89873 0.88842 0.86118 0.83740 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.62 10.28 -34.13 -0.35 -5.98 16 3 C 0.05 0.94 6.70 -39.11 -0.26 0.67 16 4 C -0.12 -1.87 8.79 -38.90 -0.34 -2.21 16 5 C -0.20 -3.12 5.61 -105.08 -0.59 -3.71 16 6 C 0.12 1.64 9.46 -36.41 -0.34 1.29 16 7 C -0.19 -2.87 5.84 -104.56 -0.61 -3.48 16 8 C 0.27 4.71 9.08 -22.47 -0.20 4.50 16 9 N -0.42 -7.96 17.68 41.84 0.74 -7.22 16 10 C 0.62 8.81 7.79 -12.78 -0.10 8.71 16 11 O -0.49 -6.88 14.22 5.30 0.08 -6.80 16 12 N -0.37 -5.22 3.64 -9.51 -0.03 -5.25 16 13 N -0.27 -4.00 9.63 33.70 0.32 -3.68 16 14 C 0.10 1.23 7.21 -82.36 -0.59 0.63 16 15 C -0.08 -0.65 10.44 36.00 0.38 -0.27 16 16 C -0.25 -2.51 10.65 -39.97 -0.43 -2.94 16 17 C 0.10 1.18 6.90 -81.78 -0.56 0.62 16 18 C -0.10 -0.81 9.65 36.01 0.35 -0.46 16 19 C -0.04 -0.74 8.26 -39.42 -0.33 -1.07 16 20 C -0.21 -4.44 9.09 -39.86 -0.36 -4.80 16 21 C 0.16 3.63 6.67 -38.67 -0.26 3.38 16 22 O -0.17 -4.30 8.35 -13.47 -0.11 -4.41 16 23 C -0.38 -10.10 9.94 30.93 0.31 -9.79 16 24 H 0.12 3.10 5.41 -52.49 -0.28 2.81 16 25 C 0.07 1.78 5.50 -17.50 -0.10 1.69 16 26 N -0.85 -22.85 13.96 55.49 0.77 -22.08 16 27 Si 0.91 20.41 28.62 -169.99 -4.86 15.55 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 30 H -0.25 -5.79 7.11 56.52 0.40 -5.38 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 33 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 34 H 0.13 1.54 6.29 -52.49 -0.33 1.21 16 35 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.90 6.27 -51.93 -0.33 0.57 16 43 H 0.12 2.21 5.24 -52.49 -0.27 1.94 16 44 H 0.15 3.18 5.61 -52.49 -0.29 2.89 16 45 H 0.29 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -31.52 392.08 -5.39 -36.91 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.80 Total: 2.98 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.06 Total: -5.92 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 1.80 Total: -38.23 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.39 Total: -17.19 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.86 Total: 15.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.52 -5.39 -36.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408980437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.436 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds