Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48496 * 109.47157 * 270.00094 * 3 2 1 5 5 H 1.48501 * 109.47057 * 30.00102 * 3 2 1 6 6 H 1.48499 * 109.46958 * 149.99651 * 3 2 1 7 7 C 1.39937 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99909 * 163.20872 * 7 2 1 9 9 C 1.41439 * 120.00435 * 343.20292 * 7 2 1 10 10 C 1.40780 * 120.17527 * 154.68798 * 9 7 2 11 11 C 1.37716 * 120.03632 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41263 * 0.02562 * 11 10 9 13 13 C 1.39885 * 120.35991 * 359.97438 * 12 11 10 14 14 C 1.47877 * 120.02260 * 179.97438 * 13 12 11 15 15 O 1.21551 * 119.99648 * 140.35377 * 14 13 12 16 16 N 1.34772 * 120.00775 * 320.35039 * 14 13 12 17 17 C 1.46935 * 120.62863 * 353.48099 * 16 14 13 18 18 C 1.53181 * 108.77514 * 233.58419 * 17 16 14 19 19 C 1.53044 * 109.31438 * 305.36302 * 18 17 16 20 20 C 1.53034 * 109.53900 * 61.36470 * 19 18 17 21 21 C 1.46928 * 120.63818 * 173.19390 * 16 14 13 22 22 H 1.08998 * 109.58820 * 246.20658 * 21 16 14 23 23 C 1.52998 * 109.58293 * 6.63300 * 21 16 14 24 24 N 1.46504 * 109.47209 * 290.83401 * 23 21 16 25 25 S 1.65599 * 120.00324 * 165.00066 * 24 23 21 26 26 N 1.65598 * 107.21737 * 64.99498 * 25 24 23 27 27 O 1.42091 * 106.40380 * 178.53774 * 25 24 23 28 28 O 1.42105 * 106.40339 * 311.45970 * 25 24 23 29 29 C 1.39035 * 119.94586 * 0.02562 * 13 12 11 30 30 H 0.97001 * 119.99823 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.98746 * 0.04304 * 10 9 7 32 32 H 1.07998 * 119.79357 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.81826 * 179.70342 * 12 11 10 34 34 H 1.09002 * 109.58332 * 353.36815 * 17 16 14 35 35 H 1.09000 * 109.58587 * 113.79035 * 17 16 14 36 36 H 1.09005 * 109.50287 * 65.31247 * 18 17 16 37 37 H 1.08997 * 109.50014 * 185.41111 * 18 17 16 38 38 H 1.08996 * 109.46209 * 181.39300 * 19 18 17 39 39 H 1.09004 * 109.45639 * 301.34724 * 19 18 17 40 40 H 1.08997 * 109.49667 * 58.58850 * 20 19 18 41 41 H 1.08997 * 109.49880 * 178.65657 * 20 19 18 42 42 H 1.09002 * 109.47097 * 50.82695 * 23 21 16 43 43 H 1.08993 * 109.47531 * 170.83358 * 23 21 16 44 44 H 0.96999 * 119.99497 * 344.99843 * 24 23 21 45 45 H 0.97001 * 120.00098 * 150.00189 * 26 25 24 46 46 H 0.96999 * 120.00430 * 330.00517 * 26 25 24 47 47 H 1.07998 * 120.19936 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4399 2.6527 0.7001 6 1 3.5399 1.4401 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0534 -1.2320 -0.2696 9 6 1.3460 -2.4106 0.3550 10 6 1.8171 -3.6475 -0.1244 11 6 1.1701 -4.8128 0.2221 12 6 0.0553 -4.7781 1.0410 13 6 -0.4273 -3.5584 1.5270 14 6 -1.6196 -3.5299 2.4013 15 8 -1.6602 -2.7700 3.3491 16 7 -2.6614 -4.3463 2.1471 17 6 -2.6899 -5.1663 0.9282 18 6 -4.0019 -4.8983 0.1843 19 6 -5.1793 -5.1396 1.1318 20 6 -5.0896 -4.1743 2.3158 21 6 -3.7872 -4.4382 3.0867 22 1 -3.8155 -5.4350 3.5268 23 6 -3.6210 -3.3916 4.1902 24 7 -2.4882 -3.7579 5.0440 25 16 -1.8390 -2.6427 6.0820 26 7 -3.0015 -2.2837 7.2054 27 8 -0.7955 -3.3060 6.7822 28 8 -1.6354 -1.4588 5.3229 29 6 0.2144 -2.3729 1.1866 30 1 -0.4850 0.8401 0.0004 31 1 2.6865 -3.6828 -0.7641 32 1 1.5346 -5.7595 -0.1483 33 1 -0.4476 -5.6973 1.3028 34 1 -1.8471 -4.9012 0.2897 35 1 -2.6304 -6.2212 1.1960 36 1 -4.0194 -3.8648 -0.1618 37 1 -4.0792 -5.5701 -0.6705 38 1 -6.1150 -4.9735 0.5979 39 1 -5.1471 -6.1661 1.4969 40 1 -5.0968 -3.1477 1.9496 41 1 -5.9413 -4.3304 2.9779 42 1 -3.4365 -2.4159 3.7407 43 1 -4.5296 -3.3491 4.7907 44 1 -2.1185 -4.6536 5.0013 45 1 -2.7440 -2.0250 8.1041 46 1 -3.9399 -2.3322 6.9648 47 1 -0.1549 -1.4289 1.5592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521609944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = -60.394130 kcal Electronic energy + Delta-G solvation = -33152.877133 eV Core-core repulsion = 28849.193000 eV Total energy + Delta-G solvation = -4303.684133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34897 -37.55778 -36.78829 -36.55903 -35.21995 -34.95530 -33.69480 -33.00775 -32.59085 -31.16270 -29.82053 -29.39475 -26.35004 -25.35901 -24.27205 -22.88627 -21.67909 -20.88827 -20.43101 -19.57161 -18.90679 -17.94543 -17.35430 -17.12259 -16.04065 -15.96594 -15.85211 -15.63712 -15.28815 -14.86648 -14.75172 -14.33494 -14.20886 -14.01513 -13.69665 -13.18701 -13.12383 -12.82929 -12.66433 -12.53587 -12.37685 -12.23310 -11.87716 -11.70708 -11.55967 -11.37376 -11.27496 -11.22174 -11.11857 -11.02753 -10.96406 -10.77149 -10.60634 -10.47263 -10.34457 -10.31033 -9.88149 -9.66415 -9.22123 -9.11442 -8.50634 -8.12056 -7.53108 -7.44752 -6.77028 -4.37484 1.05154 2.35800 2.85193 3.11445 3.14789 3.20151 3.35799 3.39424 3.78603 3.96097 4.00347 4.57091 4.62050 4.75138 4.84091 5.06969 5.13177 5.18144 5.24352 5.35916 5.48487 5.58089 5.62271 5.69008 5.77495 5.88936 5.92216 5.97728 6.00731 6.09340 6.14872 6.19972 6.30350 6.35370 6.41458 6.73036 6.93861 7.02779 7.04745 7.10537 7.25328 7.32508 7.43297 7.71354 7.82746 7.92473 8.03881 8.21796 8.54233 8.84879 8.87646 8.96350 10.17965 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.008037 B = 0.004379 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.999888 B = 6392.279379 C = 8233.236810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.223 4.223 13 C -0.122 4.122 14 C 0.562 3.438 15 O -0.515 6.515 16 N -0.613 5.613 17 C 0.101 3.899 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.130 4.130 21 C 0.145 3.855 22 H 0.072 0.928 23 C 0.127 3.873 24 N -1.097 6.097 25 S 2.801 3.199 26 N -1.271 6.271 27 O -1.001 7.001 28 O -0.946 6.946 29 C -0.097 4.097 30 H 0.283 0.717 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.047 0.953 44 H 0.409 0.591 45 H 0.414 0.586 46 H 0.408 0.592 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 -8.595 6.223 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.099 3.901 10 C -0.234 4.234 11 C -0.116 4.116 12 C -0.243 4.243 13 C -0.125 4.125 14 C 0.354 3.646 15 O -0.391 6.391 16 N -0.349 5.349 17 C -0.021 4.021 18 C -0.176 4.176 19 C -0.153 4.153 20 C -0.169 4.169 21 C 0.040 3.960 22 H 0.090 0.910 23 C 0.001 3.999 24 N -0.858 5.858 25 S 2.804 3.196 26 N -0.942 5.942 27 O -0.985 6.985 28 O -0.928 6.928 29 C -0.117 4.117 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.065 0.935 44 H 0.243 0.757 45 H 0.242 0.758 46 H 0.233 0.767 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.276 -7.454 6.556 16.577 hybrid contribution -0.293 0.076 0.089 0.316 sum -13.569 -7.378 6.646 16.814 Atomic orbital electron populations 1.69765 1.07607 1.29617 1.34250 1.25926 0.94785 1.01488 0.92172 0.86291 0.80733 0.80582 0.79049 1.19526 1.19937 1.18369 1.19579 0.97789 0.90988 1.40452 0.90188 1.17578 0.91134 0.92394 0.88964 1.21081 1.03405 0.92890 1.06014 1.20429 0.95976 0.96601 0.98635 1.20428 1.01556 0.95009 1.07302 1.19455 0.96395 0.95308 1.01359 1.18980 0.82441 0.78615 0.84596 1.90761 1.80760 1.37892 1.29706 1.47959 1.19712 1.44706 1.22500 1.22087 0.99447 0.94037 0.86565 1.21964 0.94766 1.02791 0.98098 1.21482 0.98483 0.99085 0.96297 1.22003 0.96319 1.00995 0.97564 1.21383 0.86650 0.98557 0.89440 0.91047 1.21463 0.85914 1.01566 0.90952 1.55409 1.47742 1.28124 1.54558 1.01496 0.71985 0.74031 0.72078 1.53865 1.22740 1.88885 1.28713 1.93582 1.54500 1.76031 1.74354 1.93674 1.82703 1.47241 1.69162 1.21553 0.96761 0.96173 0.97204 0.90601 0.88786 0.89054 0.88745 0.86923 0.92371 0.91217 0.91049 0.91893 0.92056 0.90895 0.91020 0.87270 0.93511 0.75725 0.75849 0.76685 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.88 10.95 55.55 0.61 -20.27 16 2 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.91 19.37 29.59 -169.99 -5.03 14.34 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.28 9.05 -37.73 -0.34 -12.62 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 9 C 0.10 2.72 5.57 -106.87 -0.59 2.12 16 10 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 11 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 12 C -0.22 -4.63 7.40 -38.92 -0.29 -4.92 16 13 C -0.12 -2.82 5.12 -105.04 -0.54 -3.36 16 14 C 0.56 11.46 7.00 -12.32 -0.09 11.37 16 15 O -0.51 -11.28 8.20 -18.17 -0.15 -11.43 16 16 N -0.61 -9.41 2.97 -166.06 -0.49 -9.91 16 17 C 0.10 1.37 4.85 -3.71 -0.02 1.36 16 18 C -0.14 -1.56 6.08 -26.61 -0.16 -1.72 16 19 C -0.12 -1.06 5.88 -26.69 -0.16 -1.22 16 20 C -0.13 -1.26 5.39 -26.39 -0.14 -1.40 16 21 C 0.14 1.71 2.97 -67.37 -0.20 1.51 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 C 0.13 1.60 4.93 -4.04 -0.02 1.58 16 24 N -1.10 -15.24 3.94 -10.61 -0.04 -15.28 16 25 S 2.80 44.73 6.31 -107.50 -0.68 44.05 16 26 N -1.27 -12.89 9.58 60.35 0.58 -12.31 16 27 O -1.00 -19.19 18.14 -57.17 -1.04 -20.22 16 28 O -0.95 -20.03 15.47 -66.77 -1.03 -21.07 16 29 C -0.10 -2.58 8.27 -38.44 -0.32 -2.90 16 30 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 31 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.09 1.68 6.52 -52.49 -0.34 1.34 16 34 H 0.11 1.83 4.77 -51.93 -0.25 1.58 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 1.77 6.01 -51.93 -0.31 1.46 16 43 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 44 H 0.41 5.41 8.65 -34.47 -0.30 5.11 16 45 H 0.41 3.51 8.96 -34.47 -0.31 3.21 16 46 H 0.41 3.01 8.96 -34.47 -0.31 2.70 16 47 H 0.13 3.80 6.17 -52.49 -0.32 3.48 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -34.77 379.50 -11.63 -46.40 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -6.34 Total: 16.30 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -3.73 Total: -16.33 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.65 Total: -57.76 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -2.22 Total: -52.72 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 16 Polarization: 44.73 SS G_CDS: -0.68 Total: 44.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.77 -11.63 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521609944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.997 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds