Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.46897 * 111.00153 * 172.60616 * 14 13 12 16 16 C 1.52994 * 109.47226 * 294.30122 * 15 14 13 17 17 N 1.46503 * 109.47195 * 179.97438 * 16 15 14 18 18 S 1.65607 * 120.00237 * 165.00419 * 17 16 15 19 19 O 1.42094 * 106.40044 * 178.54155 * 18 17 16 20 20 O 1.42105 * 106.39608 * 311.45877 * 18 17 16 21 21 C 1.76193 * 107.21683 * 64.99657 * 18 17 16 22 22 C 1.38235 * 119.99990 * 269.72459 * 21 18 17 23 23 C 1.38237 * 119.99794 * 179.76901 * 22 21 18 24 24 C 1.38236 * 119.99980 * 0.51233 * 23 22 21 25 25 C 1.38227 * 119.99807 * 359.74508 * 24 23 22 26 26 C 1.38234 * 120.00576 * 359.97438 * 25 24 23 27 27 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 28 28 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 29 29 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 31 31 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 32 32 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 33 33 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 34 34 H 1.09003 * 109.47098 * 54.30008 * 15 14 13 35 35 H 1.09003 * 109.47503 * 174.29843 * 15 14 13 36 36 H 1.08995 * 109.47765 * 299.99680 * 16 15 14 37 37 H 1.08999 * 109.47389 * 60.00185 * 16 15 14 38 38 H 0.97001 * 120.00194 * 344.99861 * 17 16 15 39 39 H 1.08005 * 120.00380 * 0.02562 * 22 21 18 40 40 H 1.08003 * 119.99913 * 180.23226 * 23 22 21 41 41 H 1.08000 * 119.99897 * 179.72634 * 24 23 22 42 42 H 1.08006 * 119.99455 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.00553 * 179.97438 * 26 25 24 44 44 H 1.08994 * 109.49159 * 303.15220 * 27 14 13 45 45 H 1.08999 * 109.51460 * 183.07675 * 27 14 13 46 46 H 1.08999 * 109.63197 * 350.89564 * 28 11 9 47 47 H 1.09008 * 109.62635 * 111.48013 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7848 -7.0303 1.5623 16 6 5.2539 -7.2709 1.2092 17 7 5.8013 -8.3132 2.0811 18 16 7.2372 -9.0438 1.6976 19 8 7.5079 -9.9690 2.7415 20 8 7.1432 -9.4200 0.3305 21 6 8.4911 -7.8095 1.7889 22 6 8.8123 -7.0663 0.6685 23 6 9.7928 -6.0946 0.7414 24 6 10.4595 -5.8733 1.9320 25 6 10.1420 -6.6202 3.0509 26 6 9.1575 -7.5879 2.9796 27 6 1.7771 -5.8907 0.8322 28 6 1.2249 -4.9226 -0.2195 29 1 -0.4850 0.8400 0.0004 30 1 3.7736 -3.9711 -1.0920 31 1 3.8007 -2.6840 0.1423 32 1 3.6077 -4.3397 1.9417 33 1 4.9637 -4.8053 0.8859 34 1 3.7085 -6.7119 2.6020 35 1 3.2217 -7.9531 1.4227 36 1 5.3303 -7.5893 0.1697 37 1 5.8170 -6.3481 1.3490 38 1 5.3228 -8.5753 2.8832 39 1 8.2943 -7.2419 -0.2628 40 1 10.0412 -5.5113 -0.1331 41 1 11.2286 -5.1172 1.9878 42 1 10.6632 -6.4476 3.9810 43 1 8.9097 -8.1717 3.8537 44 1 1.5327 -5.5231 1.8288 45 1 1.3329 -6.8757 0.6888 46 1 0.1612 -4.7606 -0.0453 47 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579488900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -63.356887 kcal Electronic energy + Delta-G solvation = -30798.004188 eV Core-core repulsion = 26494.191580 eV Total energy + Delta-G solvation = -4303.812608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.49355 -39.05168 -37.56723 -37.01996 -36.15499 -35.45620 -33.22077 -32.50574 -31.72549 -31.46062 -30.75307 -28.83220 -26.67684 -25.14886 -23.65315 -23.25829 -23.16438 -22.11816 -20.75554 -19.87878 -18.88404 -18.50765 -17.73863 -16.77183 -16.57695 -16.45979 -15.86385 -15.61919 -15.33554 -14.97711 -14.90598 -14.72653 -14.37190 -14.34898 -14.09865 -13.95371 -13.87123 -13.47205 -13.39708 -12.69224 -12.61238 -12.55768 -12.40203 -12.30849 -12.04169 -11.88154 -11.70322 -11.65854 -11.37351 -11.20588 -11.11532 -10.99243 -10.93640 -10.78865 -10.50547 -10.26160 -10.03083 -9.86903 -9.74444 -9.47709 -8.90297 -8.31079 -7.62800 -7.23196 -6.24040 -4.69208 0.02680 0.41750 0.86087 2.61311 3.09619 3.09815 3.16957 3.19868 3.45494 3.89039 4.01884 4.07969 4.41423 4.45711 4.50587 4.54547 4.55429 4.61371 4.81634 4.87488 4.98804 5.19554 5.23927 5.26259 5.29399 5.46181 5.47689 5.58125 5.63199 5.67189 5.70883 5.78566 5.80531 5.82109 5.84596 5.91954 6.03202 6.20144 6.38716 6.40745 6.50048 6.58251 6.66826 7.10814 7.17605 7.40789 7.56966 8.08708 8.31949 8.97716 9.39940 10.53264 10.71845 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.002259 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.745543 B =12393.596747 C =14196.270920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.645 5.645 12 C 0.128 3.872 13 C 0.035 3.965 14 N -0.534 5.534 15 C 0.050 3.950 16 C 0.117 3.883 17 N -1.116 6.116 18 S 2.699 3.301 19 O -0.961 6.961 20 O -0.953 6.953 21 C -0.678 4.678 22 C -0.020 4.020 23 C -0.139 4.139 24 C -0.064 4.064 25 C -0.142 4.142 26 C -0.020 4.020 27 C 0.047 3.953 28 C 0.125 3.875 29 H 0.269 0.731 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.418 0.582 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.880 -14.110 5.523 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.384 5.384 12 C 0.003 3.997 13 C -0.093 4.093 14 N -0.259 5.259 15 C -0.080 4.080 16 C -0.010 4.010 17 N -0.877 5.877 18 S 2.788 3.212 19 O -0.951 6.951 20 O -0.943 6.943 21 C -0.765 4.765 22 C -0.039 4.039 23 C -0.158 4.158 24 C -0.082 4.082 25 C -0.161 4.161 26 C -0.040 4.040 27 C -0.082 4.082 28 C 0.000 4.000 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.253 0.747 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.314 -14.918 4.687 24.850 hybrid contribution 0.569 1.668 1.401 2.252 sum 19.883 -13.250 6.088 24.657 Atomic orbital electron populations 1.70012 1.07086 1.27339 1.35213 1.25730 0.94612 1.00315 0.92586 0.86393 0.80205 0.81481 0.78817 1.19773 1.18837 1.20429 1.20961 0.93533 0.89255 1.54368 0.90972 1.18255 0.86904 0.82203 0.76088 1.90590 1.14413 1.86084 1.55039 1.48250 1.04731 1.05859 1.79545 1.21574 0.82755 0.98559 0.96769 1.22779 0.98304 0.89289 0.98965 1.61894 1.05302 1.05797 1.52931 1.22184 0.94024 0.96583 0.95227 1.21365 0.95263 0.89771 0.94551 1.55443 1.39485 1.55171 1.37562 1.01727 0.72550 0.73145 0.73742 1.93593 1.84466 1.59239 1.57819 1.93606 1.85909 1.80396 1.34366 1.30953 1.21954 1.22596 1.00968 1.21031 0.94624 0.91505 0.96749 1.21371 0.97079 0.98721 0.98622 1.21549 0.97035 0.96858 0.92738 1.21327 0.98698 0.96861 0.99238 1.20942 0.92736 0.94541 0.95755 1.22527 0.86553 0.99950 0.99159 1.21215 0.97942 0.84342 0.96471 0.92060 0.93034 0.88764 0.94428 0.90633 0.94305 0.89984 0.88975 0.91469 0.74713 0.83970 0.84751 0.85129 0.85002 0.84291 0.94623 0.90661 0.89496 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.65 11.84 55.55 0.66 -21.99 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.55 29.56 -169.99 -5.02 14.53 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.54 -14.86 8.86 -35.63 -0.32 -15.18 16 8 H 0.07 1.78 5.74 -52.49 -0.30 1.48 16 9 C 0.56 15.61 7.63 -12.99 -0.10 15.51 16 10 O -0.58 -18.46 14.49 5.20 0.08 -18.38 16 11 N -0.65 -14.31 3.00 -173.84 -0.52 -14.83 16 12 C 0.13 2.28 6.50 -3.36 -0.02 2.26 16 13 C 0.04 0.50 5.48 -3.46 -0.02 0.48 16 14 N -0.53 -7.16 4.63 -234.02 -1.08 -8.25 16 15 C 0.05 0.51 5.10 -3.83 -0.02 0.49 16 16 C 0.12 1.04 6.15 -4.04 -0.02 1.01 16 17 N -1.12 -8.67 6.00 -10.62 -0.06 -8.73 16 18 S 2.70 25.75 5.74 -107.50 -0.62 25.13 16 19 O -0.96 -11.24 17.28 -57.17 -0.99 -12.23 16 20 O -0.95 -11.79 16.75 -57.17 -0.96 -12.74 16 21 C -0.68 -5.98 5.95 -39.58 -0.24 -6.21 16 22 C -0.02 -0.17 9.52 -39.58 -0.38 -0.54 16 23 C -0.14 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.06 -0.42 10.05 -39.59 -0.40 -0.81 16 25 C -0.14 -0.98 10.05 -39.59 -0.40 -1.38 16 26 C -0.02 -0.16 9.52 -39.58 -0.38 -0.54 16 27 C 0.05 0.71 5.62 -3.70 -0.02 0.69 16 28 C 0.12 2.38 6.61 -3.60 -0.02 2.36 16 29 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 30 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 31 H 0.09 1.74 5.46 -51.93 -0.28 1.45 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.86 6.16 -51.93 -0.32 0.54 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.08 0.77 7.97 -51.93 -0.41 0.35 16 36 H 0.09 0.88 7.75 -51.93 -0.40 0.47 16 37 H 0.07 0.55 6.40 -51.93 -0.33 0.22 16 38 H 0.42 2.50 8.65 -34.47 -0.30 2.20 16 39 H 0.14 1.06 7.61 -52.48 -0.40 0.66 16 40 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 43 H 0.14 0.93 7.62 -52.49 -0.40 0.53 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.95 7.99 -51.93 -0.41 0.54 16 46 H 0.09 1.85 7.04 -51.93 -0.37 1.49 16 47 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -38.08 394.74 -11.84 -49.92 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.45 Total: 2.61 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.82 Total: -0.98 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -1.01 Total: -53.80 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.87 Total: -43.35 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 25.75 SS G_CDS: -0.62 Total: 25.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.08 -11.84 -49.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579488900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.436 kcal (2) G-P(sol) polarization free energy of solvation -38.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds