Wall clock time and date at job start Tue Mar 31 2020 06:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99706 * 2 1 4 4 C 1.53002 * 109.46769 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47508 * 64.99390 * 4 3 2 6 6 C 1.46499 * 120.00091 * 275.00187 * 5 4 3 7 7 C 1.50709 * 109.46938 * 278.75731 * 6 5 4 8 8 H 1.07993 * 119.99864 * 4.68689 * 7 6 5 9 9 C 1.37876 * 119.99600 * 184.69043 * 7 6 5 10 10 N 1.31508 * 120.00276 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99737 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47128 * 89.99978 * 11 9 7 13 13 H 1.48500 * 109.47136 * 210.00342 * 11 9 7 14 14 H 1.48504 * 109.47251 * 329.99900 * 11 9 7 15 15 S 1.65596 * 119.99634 * 95.00336 * 5 4 3 16 16 O 1.42096 * 106.40333 * 330.45167 * 15 5 4 17 17 O 1.42109 * 106.39968 * 197.53518 * 15 5 4 18 18 N 1.65596 * 107.22253 * 83.99699 * 15 5 4 19 19 C 1.40728 * 120.00083 * 65.84278 * 18 15 5 20 20 C 1.34587 * 126.52020 * 234.35205 * 19 18 15 21 21 C 1.50704 * 125.12598 * 0.02562 * 20 19 18 22 22 N 1.37620 * 109.75000 * 179.75666 * 20 19 18 23 23 H 0.96999 * 125.08673 * 180.23862 * 22 20 19 24 24 C 1.37660 * 109.83414 * 0.24498 * 22 20 19 25 25 C 1.39170 * 133.38606 * 180.02562 * 24 22 20 26 26 C 1.37731 * 119.78283 * 179.97438 * 25 24 22 27 27 C 1.38855 * 120.65960 * 0.06148 * 26 25 24 28 28 C 1.36616 * 120.52690 * 359.97095 * 27 26 25 29 29 C 1.39611 * 119.77914 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47533 * 300.00404 * 1 2 3 31 31 H 1.09000 * 109.47181 * 60.00522 * 1 2 3 32 32 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47931 * 59.99761 * 3 2 1 34 34 H 1.09002 * 109.46779 * 299.98870 * 3 2 1 35 35 H 1.09003 * 109.47119 * 304.98976 * 4 3 2 36 36 H 1.09003 * 109.46956 * 184.99773 * 4 3 2 37 37 H 1.08999 * 109.46781 * 38.75353 * 6 5 4 38 38 H 1.08994 * 109.46998 * 158.75755 * 6 5 4 39 39 H 0.97002 * 119.99868 * 180.02562 * 10 9 7 40 40 H 0.97000 * 119.99959 * 245.84363 * 18 15 5 41 41 H 1.09000 * 109.47025 * 264.77401 * 21 20 19 42 42 H 1.09003 * 109.47065 * 144.77273 * 21 20 19 43 43 H 1.09002 * 109.46780 * 24.77796 * 21 20 19 44 44 H 1.08002 * 120.10473 * 359.97438 * 25 24 22 45 45 H 1.07993 * 119.67129 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.73831 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.10962 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2526 6 6 4.0004 -0.8951 -1.3780 7 6 5.2577 -1.4325 -0.7442 8 1 5.9300 -0.7639 -0.2271 9 6 5.5496 -2.7776 -0.8247 10 7 4.7307 -3.5917 -1.4540 11 14 7.1084 -3.4435 -0.0398 12 1 6.8252 -3.8426 1.3622 13 1 7.5820 -4.6250 -0.8047 14 1 8.1574 -2.3924 -0.0530 15 16 4.4455 1.5128 -2.5262 16 8 3.7092 2.7234 -2.4179 17 8 4.4109 0.6826 -3.6790 18 7 6.0348 1.9087 -2.2826 19 6 7.0226 0.9068 -2.3158 20 6 7.9274 0.6420 -1.3553 21 6 8.0471 1.3832 -0.0487 22 7 8.7229 -0.4117 -1.7437 23 1 9.4454 -0.7885 -1.2174 24 6 8.3403 -0.8509 -2.9910 25 6 8.7972 -1.8630 -3.8299 26 6 8.1933 -2.0640 -5.0513 27 6 7.1321 -1.2655 -5.4564 28 6 6.6681 -0.2659 -4.6490 29 6 7.2646 -0.0452 -3.4062 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6886 1.8465 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8514 0.5684 0.8411 36 1 3.9785 2.1766 0.0889 37 1 3.1307 -1.3177 -0.8748 38 1 3.9791 -1.1696 -2.4326 39 1 4.9359 -4.5381 -1.5102 40 1 6.2850 2.8311 -2.1170 41 1 8.8004 2.1654 -0.1423 42 1 8.3410 0.6880 0.7378 43 1 7.0864 1.8321 0.2037 44 1 9.6227 -2.4888 -3.5240 45 1 8.5491 -2.8502 -5.7006 46 1 6.6698 -1.4359 -6.4175 47 1 5.8425 0.3515 -4.9711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:25 Heat of formation + Delta-G solvation = -54.073642 kcal Electronic energy + Delta-G solvation = -34091.665757 eV Core-core repulsion = 29788.255701 eV Total energy + Delta-G solvation = -4303.410056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.71171 -37.68265 -36.60951 -36.50837 -35.25068 -35.13791 -34.43841 -32.39543 -30.70931 -30.32325 -29.39224 -28.18934 -26.64270 -25.95984 -25.58374 -22.73205 -21.73828 -21.61120 -21.05457 -20.02908 -18.65067 -17.48026 -17.06113 -16.90077 -16.24588 -15.88324 -15.69594 -15.53761 -15.45044 -14.80412 -14.52329 -14.46334 -14.29347 -14.09849 -13.45675 -13.29572 -13.12883 -12.62332 -12.56459 -12.44504 -12.27566 -12.06341 -11.98438 -11.81857 -11.73533 -11.58770 -11.33791 -11.18457 -11.11914 -11.00905 -10.88961 -10.70741 -10.57216 -10.34600 -10.17255 -9.93871 -9.81107 -9.58335 -9.23379 -8.66959 -8.27435 -7.89474 -7.49099 -6.87098 -5.89031 -3.89838 1.26194 1.80767 2.32084 3.14660 3.28015 3.31730 3.38170 3.42605 3.74664 4.17587 4.21569 4.50770 4.61130 5.08901 5.15165 5.32365 5.38300 5.46604 5.48782 5.52354 5.55265 5.59771 5.67522 5.69012 5.73482 5.73745 5.82469 5.91392 5.97656 6.00801 6.06909 6.25406 6.36146 6.45785 6.47253 6.64244 6.78281 7.08527 7.16271 7.28152 7.39122 7.54043 7.60841 7.68873 7.73226 7.81438 7.92733 8.05372 8.09314 8.41203 9.11113 9.72017 11.20111 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.009589 B = 0.005525 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.272653 B = 5066.702522 C = 5978.678663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.978 5.978 6 C 0.247 3.753 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.889 5.889 11 Si 0.884 3.116 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.272 1.272 15 S 2.774 3.226 16 O -1.005 7.005 17 O -0.962 6.962 18 N -1.046 6.046 19 C 0.076 3.924 20 C 0.084 3.916 21 C -0.087 4.087 22 N -0.585 5.585 23 H 0.411 0.589 24 C 0.121 3.879 25 C -0.145 4.145 26 C -0.094 4.094 27 C -0.161 4.161 28 C -0.041 4.041 29 C -0.090 4.090 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.258 0.742 40 H 0.407 0.593 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.376 9.920 1.422 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.819 5.819 6 C 0.126 3.874 7 C -0.554 4.554 8 H 0.078 0.922 9 C -0.132 4.132 10 N -0.529 5.529 11 Si 0.713 3.287 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.198 1.198 15 S 2.784 3.216 16 O -0.989 6.989 17 O -0.945 6.945 18 N -0.796 5.796 19 C -0.026 4.026 20 C -0.027 4.027 21 C -0.145 4.145 22 N -0.189 5.189 23 H 0.247 0.753 24 C 0.014 3.986 25 C -0.166 4.166 26 C -0.114 4.114 27 C -0.180 4.180 28 C -0.060 4.060 29 C -0.096 4.096 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.242 0.758 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.128 0.872 45 H 0.133 0.867 46 H 0.132 0.868 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.893 9.655 0.668 10.432 hybrid contribution 1.266 -0.433 1.293 1.860 sum 5.159 9.222 1.961 10.747 Atomic orbital electron populations 1.22697 0.82453 1.02403 0.99064 1.88113 1.18352 1.27003 1.95139 1.23112 0.95439 0.85199 0.99835 1.21032 0.91323 0.97357 0.89324 1.57607 1.78083 1.19520 1.26705 1.19292 0.97964 0.71088 0.99068 1.21431 1.06564 0.92794 1.34573 0.92206 1.24785 0.96006 0.97021 0.95418 1.69926 1.36523 1.03910 1.42494 0.86761 0.84658 0.78511 0.78777 1.21607 1.21714 1.19760 1.02283 0.72345 0.72357 0.74611 1.93539 1.69671 1.47792 1.87917 1.93545 1.85649 1.68338 1.47004 1.53274 1.23943 1.13818 1.88596 1.16511 0.96094 0.95797 0.94202 1.19839 0.95752 0.91565 0.95581 1.20362 1.03204 0.98912 0.91986 1.41529 1.31888 1.29630 1.15872 0.75253 1.17919 0.96896 0.97532 0.86251 1.19823 1.03116 0.98774 0.94928 1.20667 0.96451 0.98894 0.95339 1.20514 0.98887 0.97947 1.00659 1.20774 0.96694 0.96990 0.91521 1.18901 0.97510 0.98432 0.94765 0.94860 0.94625 0.89889 0.93341 0.93137 0.89185 0.90785 0.93216 0.93125 0.93174 0.75834 0.91396 0.91295 0.89985 0.87198 0.86691 0.86799 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.81 9.00 -35.23 -0.32 -7.13 16 3 C 0.04 0.70 6.28 37.16 0.23 0.93 16 4 C 0.14 2.33 5.76 -4.04 -0.02 2.31 16 5 N -0.98 -19.99 2.82 -115.66 -0.33 -20.31 16 6 C 0.25 6.21 5.31 -5.19 -0.03 6.18 16 7 C -0.51 -13.22 8.95 -34.44 -0.31 -13.53 16 8 H 0.06 1.47 6.84 -52.49 -0.36 1.11 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 11 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.27 -5.78 6.63 56.52 0.37 -5.40 16 15 S 2.77 54.55 6.04 -107.50 -0.65 53.90 16 16 O -1.01 -19.91 17.17 -57.17 -0.98 -20.90 16 17 O -0.96 -21.86 12.18 -57.17 -0.70 -22.56 16 18 N -1.05 -17.36 5.78 33.46 0.19 -17.16 16 19 C 0.08 1.40 6.23 -81.62 -0.51 0.89 16 20 C 0.08 1.38 6.22 -81.28 -0.51 0.88 16 21 C -0.09 -1.08 10.34 36.01 0.37 -0.71 16 22 N -0.58 -9.76 5.75 -6.70 -0.04 -9.79 16 23 H 0.41 5.79 8.84 -40.82 -0.36 5.43 16 24 C 0.12 2.31 7.27 -83.98 -0.61 1.70 16 25 C -0.15 -2.59 10.08 -39.42 -0.40 -2.98 16 26 C -0.09 -1.63 10.01 -39.54 -0.40 -2.03 16 27 C -0.16 -2.97 9.97 -39.94 -0.40 -3.37 16 28 C -0.04 -0.84 8.83 -39.66 -0.35 -1.19 16 29 C -0.09 -1.82 6.04 -105.02 -0.63 -2.46 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.85 7.98 -51.93 -0.41 0.43 16 35 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 36 H 0.07 1.03 7.77 -51.93 -0.40 0.63 16 37 H 0.05 1.35 6.57 -51.93 -0.34 1.01 16 38 H 0.05 1.45 6.80 -51.93 -0.35 1.09 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.41 5.31 8.96 -34.47 -0.31 5.00 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.98 8.01 -51.93 -0.42 0.57 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.14 2.98 5.61 -52.49 -0.29 2.68 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -34.31 397.00 -10.30 -44.61 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.64 Total: 12.87 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.54 Total: -10.03 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: 0.56 Total: -72.65 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -2.00 Total: -50.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 54.55 SS G_CDS: -0.65 Total: 53.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.31 -10.30 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.465 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds