Wall clock time and date at job start Tue Mar 31 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99842 * 2 1 4 4 H 1.08998 * 109.46622 * 177.04531 * 3 2 1 5 5 C 1.50699 * 109.46989 * 57.04338 * 3 2 1 6 6 N 1.30492 * 125.65470 * 335.02220 * 5 3 2 7 7 C 1.34127 * 109.25957 * 179.97438 * 6 5 3 8 8 C 1.34674 * 108.01794 * 359.97438 * 7 6 5 9 9 N 1.35041 * 125.64648 * 154.99567 * 5 3 2 10 10 H 0.97009 * 126.39760 * 0.02562 * 9 5 3 11 11 C 1.50700 * 109.47148 * 297.03956 * 3 2 1 12 12 C 1.38242 * 119.97394 * 233.11007 * 11 3 2 13 13 C 1.38195 * 120.02234 * 179.77088 * 12 11 3 14 14 C 1.38462 * 119.97707 * 0.50879 * 13 12 11 15 15 F 1.35097 * 120.03018 * 179.77088 * 14 13 12 16 16 C 1.38461 * 119.94629 * 359.74202 * 14 13 12 17 17 C 1.38200 * 119.97528 * 0.02562 * 16 14 13 18 18 S 1.65597 * 119.99707 * 179.97438 * 2 1 3 19 19 O 1.42107 * 104.27803 * 26.07415 * 18 2 1 20 20 O 1.42103 * 104.27393 * 153.92964 * 18 2 1 21 21 C 1.81395 * 104.45189 * 270.00253 * 18 2 1 22 22 C 1.52998 * 109.47056 * 180.02562 * 21 18 2 23 23 C 1.50704 * 109.46970 * 179.97438 * 22 21 18 24 24 H 1.07997 * 120.00184 * 0.02562 * 23 22 21 25 25 C 1.37877 * 119.99864 * 180.02562 * 23 22 21 26 26 N 1.31519 * 120.00321 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99974 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47236 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47181 * 119.99933 * 27 25 23 30 30 H 1.48498 * 109.46709 * 239.99927 * 27 25 23 31 31 H 1.08999 * 109.47417 * 94.80208 * 1 2 3 32 32 H 1.09000 * 109.47718 * 214.80661 * 1 2 3 33 33 H 1.09005 * 109.47329 * 334.80669 * 1 2 3 34 34 H 1.07999 * 125.98962 * 180.02562 * 7 6 5 35 35 H 1.07995 * 126.58593 * 180.25703 * 8 7 6 36 36 H 1.07996 * 119.98627 * 0.02562 * 12 11 3 37 37 H 1.08001 * 120.01203 * 180.25475 * 13 12 11 38 38 H 1.07994 * 120.01494 * 179.97438 * 16 14 13 39 39 H 1.07994 * 119.99079 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47039 * 299.99657 * 21 18 2 41 41 H 1.09001 * 109.47222 * 60.00275 * 21 18 2 42 42 H 1.08995 * 109.47540 * 299.99777 * 22 21 18 43 43 H 1.09000 * 109.47572 * 60.00104 * 22 21 18 44 44 H 0.96999 * 120.00175 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2679 1.0702 0.0530 5 6 1.7792 2.0902 1.1922 6 7 0.6388 1.9950 1.8192 7 6 0.6137 2.8781 2.8284 8 6 1.7834 3.5455 2.8271 9 7 2.5229 3.0465 1.7890 10 1 3.4148 3.3271 1.5305 11 6 1.8893 2.0267 -1.2655 12 6 2.9200 2.4801 -2.0675 13 6 2.6384 3.1712 -3.2306 14 6 1.3236 3.4186 -3.5873 15 9 1.0472 4.0981 -4.7217 16 6 0.2922 2.9686 -2.7805 17 6 0.5761 2.2735 -1.6203 18 16 2.2929 -1.4342 0.0006 19 8 1.3968 -2.3564 -0.6043 20 8 3.5394 -1.1194 -0.6047 21 6 2.5192 -1.8255 1.7574 22 6 3.2817 -3.1451 1.8918 23 6 3.4703 -3.4698 3.3513 24 1 3.0844 -2.8021 4.1073 25 6 4.1354 -4.6195 3.7214 26 7 4.6049 -5.4329 2.8007 27 14 4.3684 -5.0224 5.5305 28 1 3.7517 -3.9553 6.3588 29 1 3.7202 -6.3232 5.8354 30 1 5.8192 -5.1088 5.8354 31 1 -0.3634 -0.0860 -1.0240 32 1 -0.3634 -0.8438 0.5866 33 1 -0.3634 0.9299 0.4375 34 1 -0.2013 3.0271 3.5212 35 1 2.0820 4.3224 3.5153 36 1 3.9455 2.2905 -1.7870 37 1 3.4437 3.5217 -3.8591 38 1 -0.7337 3.1613 -3.0574 39 1 -0.2282 1.9220 -0.9911 40 1 3.0866 -1.0279 2.2371 41 1 1.5450 -1.9179 2.2375 42 1 2.7149 -3.9428 1.4120 43 1 4.2560 -3.0523 1.4119 44 1 5.0724 -6.2419 3.0611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:36 Heat of formation + Delta-G solvation = -17.981107 kcal Electronic energy + Delta-G solvation = -31402.511206 eV Core-core repulsion = 26977.205935 eV Total energy + Delta-G solvation = -4425.305271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.12708 -42.32790 -39.60875 -36.71786 -36.45214 -35.45639 -33.89814 -32.79438 -31.71017 -31.24810 -31.15900 -29.57931 -27.45967 -25.63301 -24.68467 -23.24266 -22.25462 -21.62538 -21.61637 -20.74054 -18.59657 -18.38684 -17.79110 -17.57804 -16.76642 -16.57159 -16.20307 -15.83160 -15.66942 -15.31855 -15.03957 -14.69924 -14.56283 -14.47184 -14.20979 -13.95113 -13.75175 -13.56179 -13.43280 -13.27567 -12.64096 -12.55067 -12.41778 -12.34460 -12.23979 -11.76334 -11.62999 -11.52978 -11.41813 -11.10370 -11.01912 -10.97010 -10.43048 -10.40035 -10.21200 -10.03515 -9.75506 -9.37960 -9.32741 -8.97581 -8.83095 -8.58687 -8.51657 -6.13484 -4.18830 0.61666 0.87082 0.99149 1.82828 2.69811 2.90924 3.07366 3.24205 3.31598 3.35191 3.37264 3.99841 4.10516 4.24485 4.36604 4.38976 4.48785 4.54517 4.65309 4.68171 4.86260 5.01999 5.04428 5.18468 5.21710 5.24653 5.47437 5.60659 5.64465 5.65018 5.71340 5.78735 5.83741 5.86493 5.95846 6.01080 6.17838 6.25905 6.48904 6.52379 6.61133 6.62003 7.11184 7.28686 7.34433 7.80086 7.88652 8.16783 8.84876 9.45962 10.97560 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.002917 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.071793 B = 9598.113817 C =10771.150631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.986 5.986 3 C 0.282 3.718 4 H 0.122 0.878 5 C 0.200 3.800 6 N -0.469 5.469 7 C -0.027 4.027 8 C -0.050 4.050 9 N -0.560 5.560 10 H 0.420 0.580 11 C -0.105 4.105 12 C -0.074 4.074 13 C -0.156 4.156 14 C 0.101 3.899 15 F -0.141 7.141 16 C -0.157 4.157 17 C -0.069 4.069 18 S 2.586 3.414 19 O -0.954 6.954 20 O -0.965 6.965 21 C -0.585 4.585 22 C 0.028 3.972 23 C -0.518 4.518 24 H 0.062 0.938 25 C 0.058 3.942 26 N -0.890 5.890 27 Si 0.899 3.101 28 H -0.272 1.272 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 22.926 -6.038 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.819 5.819 3 C 0.172 3.828 4 H 0.140 0.860 5 C -0.066 4.066 6 N -0.189 5.189 7 C -0.175 4.175 8 C -0.184 4.184 9 N -0.163 5.163 10 H 0.258 0.742 11 C -0.108 4.108 12 C -0.093 4.093 13 C -0.174 4.174 14 C 0.081 3.919 15 F -0.120 7.120 16 C -0.175 4.175 17 C -0.087 4.087 18 S 2.685 3.315 19 O -0.945 6.945 20 O -0.955 6.955 21 C -0.719 4.719 22 C -0.011 4.011 23 C -0.558 4.558 24 H 0.080 0.920 25 C -0.145 4.145 26 N -0.529 5.529 27 Si 0.726 3.274 28 H -0.196 1.196 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.188 0.812 35 H 0.194 0.806 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.765 21.761 -7.088 23.865 hybrid contribution 1.088 0.758 1.654 2.119 sum -5.677 22.519 -5.435 23.851 Atomic orbital electron populations 1.21934 0.77907 1.05385 1.01301 1.57648 1.15871 1.18746 1.89596 1.17646 0.97196 0.82092 0.85908 0.86036 1.23352 0.89737 0.94581 0.98909 1.70093 1.18627 1.22118 1.08044 1.22432 0.98321 0.96951 0.99796 1.22775 0.94792 1.05201 0.95679 1.43177 1.17477 1.30364 1.25267 0.74197 1.19919 0.94050 0.99997 0.96799 1.20968 0.99561 0.95591 0.93145 1.21095 0.95136 1.02419 0.98787 1.17802 0.94087 0.95942 0.84036 1.91498 1.94600 1.77506 1.48393 1.21175 0.99114 1.01375 0.95875 1.21342 0.97080 0.94823 0.95502 1.05958 0.73571 0.72518 0.79411 1.93555 1.64620 1.61224 1.75053 1.93520 1.43872 1.82811 1.75310 1.30455 1.10423 1.10423 1.20565 1.18974 0.94864 0.87201 1.00045 1.21036 1.36878 1.07070 0.90793 0.92021 1.25068 0.95330 0.96083 0.98003 1.69965 1.37364 1.12676 1.32845 0.86425 0.77930 0.78436 0.84581 1.19645 1.20732 1.20818 0.93115 0.91190 0.87321 0.81186 0.80558 0.84354 0.84475 0.84582 0.83465 0.86607 0.85979 0.94816 0.94928 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 7.59 59.85 0.45 1.45 16 2 N -0.99 -13.85 2.98 -117.10 -0.35 -14.20 16 3 C 0.28 3.35 2.81 -70.23 -0.20 3.15 16 4 H 0.12 1.37 6.68 -51.93 -0.35 1.02 16 5 C 0.20 2.22 6.78 -155.42 -1.05 1.16 16 6 N -0.47 -5.59 8.23 -10.82 -0.09 -5.68 16 7 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 8 C -0.05 -0.40 12.04 -16.56 -0.20 -0.60 16 9 N -0.56 -4.69 6.15 -10.23 -0.06 -4.75 16 10 H 0.42 2.28 8.96 -40.82 -0.37 1.91 16 11 C -0.10 -1.15 4.95 -104.62 -0.52 -1.66 16 12 C -0.07 -0.72 9.67 -39.60 -0.38 -1.10 16 13 C -0.16 -1.47 10.03 -39.51 -0.40 -1.87 16 14 C 0.10 1.05 7.30 -39.42 -0.29 0.76 16 15 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 16 C -0.16 -1.55 10.03 -39.51 -0.40 -1.94 16 17 C -0.07 -0.73 8.36 -39.59 -0.33 -1.06 16 18 S 2.59 47.03 5.37 -107.50 -0.58 46.45 16 19 O -0.95 -20.05 17.18 -57.54 -0.99 -21.04 16 20 O -0.96 -19.05 16.60 -57.54 -0.96 -20.01 16 21 C -0.59 -11.46 6.12 37.16 0.23 -11.23 16 22 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 23 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 24 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 25 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 26 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 27 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.05 0.59 7.47 -51.93 -0.39 0.21 16 32 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 33 H 0.11 1.23 4.13 -51.93 -0.21 1.02 16 34 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.14 1.08 7.96 -52.49 -0.42 0.66 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.15 1.46 4.74 -52.49 -0.25 1.21 16 40 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 41 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -36.29 383.75 -10.65 -46.94 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.32 Total: 3.51 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -3.84 Total: -26.01 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.24 Total: -50.31 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.94 Total: -41.04 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.03 SS G_CDS: -0.58 Total: 46.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.29 -10.65 -46.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.957 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds