Wall clock time and date at job start Tue Mar 31 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99884 * 2 1 4 4 H 1.09001 * 109.46924 * 174.63363 * 3 2 1 5 5 C 1.50695 * 109.47444 * 294.63395 * 3 2 1 6 6 N 1.30501 * 125.64799 * 25.02454 * 5 3 2 7 7 C 1.34127 * 109.25541 * 179.97438 * 6 5 3 8 8 C 1.34666 * 108.02246 * 359.97438 * 7 6 5 9 9 N 1.35042 * 125.65430 * 204.71297 * 5 3 2 10 10 H 0.97004 * 126.39231 * 0.02562 * 9 5 3 11 11 C 1.50704 * 109.47019 * 54.63815 * 3 2 1 12 12 C 1.38245 * 119.97290 * 30.43836 * 11 3 2 13 13 C 1.38199 * 120.02512 * 180.02562 * 12 11 3 14 14 C 1.38458 * 119.97121 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.02358 * 179.97438 * 14 13 12 16 16 C 1.38462 * 119.95347 * 0.25071 * 14 13 12 17 17 C 1.38205 * 119.96853 * 359.47176 * 16 14 13 18 18 S 1.65598 * 120.00043 * 180.02562 * 2 1 3 19 19 O 1.42098 * 104.28059 * 26.06880 * 18 2 1 20 20 O 1.42101 * 104.27703 * 153.92599 * 18 2 1 21 21 C 1.81394 * 104.44944 * 269.99412 * 18 2 1 22 22 C 1.53006 * 109.47026 * 179.97438 * 21 18 2 23 23 C 1.50701 * 109.46889 * 179.97438 * 22 21 18 24 24 H 1.08003 * 120.00251 * 0.02562 * 23 22 21 25 25 C 1.37876 * 119.99724 * 179.97438 * 23 22 21 26 26 N 1.31507 * 120.00335 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99919 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47224 * 60.00039 * 27 25 23 29 29 H 1.48503 * 109.47242 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47137 * 300.00143 * 27 25 23 31 31 H 1.08997 * 109.47148 * 92.22195 * 1 2 3 32 32 H 1.09004 * 109.46454 * 212.22321 * 1 2 3 33 33 H 1.09002 * 109.46843 * 332.21691 * 1 2 3 34 34 H 1.08002 * 125.98824 * 180.02562 * 7 6 5 35 35 H 1.08000 * 126.59108 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.98609 * 0.02589 * 12 11 3 37 37 H 1.07993 * 120.01314 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.01587 * 179.74811 * 16 14 13 39 39 H 1.07994 * 119.98535 * 180.29178 * 17 16 14 40 40 H 1.08994 * 109.47530 * 300.00108 * 21 18 2 41 41 H 1.09006 * 109.47197 * 60.00423 * 21 18 2 42 42 H 1.08997 * 109.47588 * 300.00192 * 22 21 18 43 43 H 1.09000 * 109.47048 * 60.00809 * 22 21 18 44 44 H 0.97004 * 120.00374 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2652 1.0718 0.0961 5 6 1.9358 1.9999 -1.2914 6 7 0.8820 1.8550 -2.0474 7 6 0.9873 2.6632 -3.1127 8 6 2.1503 3.3349 -3.0127 9 7 2.7501 2.9180 -1.8552 10 1 3.6019 3.2235 -1.5059 11 6 1.7365 2.1149 1.1587 12 6 1.2945 1.5119 2.3215 13 6 0.8710 2.2868 3.3846 14 6 0.8891 3.6676 3.2844 15 9 0.4748 4.4262 4.3228 16 6 1.3265 4.2704 2.1172 17 6 1.7550 3.4935 1.0576 18 16 2.2930 -1.4341 -0.0006 19 8 1.3970 -2.3559 -0.6062 20 8 3.5395 -1.1188 -0.6058 21 6 2.5195 -1.8268 1.7557 22 6 3.2810 -3.1472 1.8891 23 6 3.4697 -3.4730 3.3483 24 1 3.0846 -2.8055 4.1049 25 6 4.1331 -4.6240 3.7174 26 7 4.6016 -5.4371 2.7961 27 14 4.3664 -5.0284 5.5261 28 1 3.0392 -5.1537 6.1805 29 1 5.1056 -6.3098 5.6556 30 1 5.1403 -3.9427 6.1803 31 1 -0.3633 -0.0398 -1.0269 32 1 -0.3632 -0.8694 0.5480 33 1 -0.3633 0.9092 0.4790 34 1 0.2655 2.7592 -3.9103 35 1 2.5343 4.0644 -3.7103 36 1 1.2802 0.4348 2.3992 37 1 0.5262 1.8155 4.2930 38 1 1.3372 5.3474 2.0365 39 1 2.1007 3.9635 0.1488 40 1 3.0867 -1.0297 2.2361 41 1 1.5453 -1.9197 2.2359 42 1 2.7134 -3.9442 1.4088 43 1 4.2552 -3.0547 1.4090 44 1 5.0686 -6.2467 3.0558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585115435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:39 Heat of formation + Delta-G solvation = -21.100293 kcal Electronic energy + Delta-G solvation = -31565.129271 eV Core-core repulsion = 27139.688741 eV Total energy + Delta-G solvation = -4425.440530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 367.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.11920 -42.33491 -39.63722 -36.74221 -36.44481 -35.46949 -33.94418 -32.79879 -31.82142 -31.29269 -31.10309 -29.53661 -27.27323 -25.71218 -24.75129 -23.36069 -22.19945 -21.66130 -21.61475 -20.63233 -18.66665 -18.22051 -17.98290 -17.63027 -16.72264 -16.54771 -16.30375 -15.81877 -15.61782 -15.38127 -15.12820 -14.62204 -14.54568 -14.51981 -14.15397 -13.88421 -13.75556 -13.56481 -13.41733 -13.23994 -13.13193 -12.55170 -12.44080 -12.23437 -12.12204 -11.81224 -11.63796 -11.44235 -11.39989 -11.22079 -11.09672 -10.98680 -10.47120 -10.42695 -10.16938 -10.14149 -9.81469 -9.42365 -9.38181 -8.94430 -8.85801 -8.60474 -8.52815 -6.14950 -4.20978 0.58358 0.82681 0.94374 1.83157 2.73700 2.95742 3.05885 3.25440 3.28881 3.30768 3.32090 3.98106 4.05371 4.21657 4.32236 4.36238 4.50160 4.53583 4.62851 4.66510 4.86109 4.97067 5.07991 5.13740 5.20236 5.22654 5.48293 5.51725 5.58976 5.60971 5.63652 5.77141 5.82807 5.86465 5.94123 6.00735 6.14722 6.22818 6.41546 6.51356 6.57715 6.61613 7.11556 7.25440 7.31286 7.77316 7.95205 8.13499 8.82063 9.44039 10.95955 Molecular weight = 367.12amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.003512 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.956123 B = 7970.346546 C =10244.735760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.989 5.989 3 C 0.282 3.718 4 H 0.126 0.874 5 C 0.207 3.793 6 N -0.464 5.464 7 C -0.029 4.029 8 C -0.054 4.054 9 N -0.565 5.565 10 H 0.420 0.580 11 C -0.102 4.102 12 C -0.068 4.068 13 C -0.147 4.147 14 C 0.100 3.900 15 F -0.140 7.140 16 C -0.152 4.152 17 C -0.079 4.079 18 S 2.585 3.415 19 O -0.951 6.951 20 O -0.964 6.964 21 C -0.593 4.593 22 C 0.030 3.970 23 C -0.521 4.521 24 H 0.062 0.938 25 C 0.059 3.941 26 N -0.890 5.890 27 Si 0.899 3.101 28 H -0.275 1.275 29 H -0.285 1.285 30 H -0.275 1.275 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 22.434 -5.650 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.822 5.822 3 C 0.172 3.828 4 H 0.143 0.857 5 C -0.059 4.059 6 N -0.183 5.183 7 C -0.177 4.177 8 C -0.188 4.188 9 N -0.170 5.170 10 H 0.258 0.742 11 C -0.105 4.105 12 C -0.086 4.086 13 C -0.165 4.165 14 C 0.081 3.919 15 F -0.119 7.119 16 C -0.171 4.171 17 C -0.098 4.098 18 S 2.684 3.316 19 O -0.942 6.942 20 O -0.954 6.954 21 C -0.726 4.726 22 C -0.009 4.009 23 C -0.560 4.560 24 H 0.080 0.920 25 C -0.144 4.144 26 N -0.528 5.528 27 Si 0.727 3.273 28 H -0.200 1.200 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.187 0.813 35 H 0.194 0.806 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.743 21.272 -6.355 23.203 hybrid contribution 1.069 0.880 1.589 2.107 sum -5.674 22.153 -4.766 23.359 Atomic orbital electron populations 1.21470 0.77443 1.01998 1.03481 1.57636 1.15994 1.18877 1.89706 1.17630 0.97416 0.82536 0.85232 0.85687 1.23234 0.89350 0.94891 0.98463 1.70245 1.21663 1.22070 1.04277 1.22425 0.97977 0.98152 0.99161 1.22759 0.97696 1.06444 0.91885 1.43317 1.20429 1.33480 1.19729 0.74228 1.19971 1.01655 0.93709 0.95164 1.20978 0.95533 1.01015 0.91093 1.21209 1.02801 0.91712 1.00810 1.17762 0.99892 0.89143 0.85094 1.91508 1.87907 1.75873 1.56597 1.21047 1.02503 1.00883 0.92622 1.20769 0.98386 0.92575 0.98057 1.06021 0.73618 0.72545 0.79433 1.93560 1.64517 1.61306 1.74787 1.93526 1.44027 1.82719 1.75166 1.30580 1.10457 1.10943 1.20628 1.18956 0.94914 0.86980 1.00073 1.20942 1.37341 1.07086 0.90668 0.92015 1.25057 0.95280 0.96078 0.97972 1.69938 1.37153 1.12659 1.33024 0.86542 0.78424 0.77773 0.84604 1.20035 1.21080 1.20079 0.90914 0.91456 0.91276 0.81316 0.80571 0.84170 0.84115 0.84747 0.85595 0.86096 0.85913 0.94781 0.94861 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 8.26 59.85 0.49 1.76 16 2 N -0.99 -13.62 2.11 -117.10 -0.25 -13.87 16 3 C 0.28 3.36 2.88 -70.23 -0.20 3.16 16 4 H 0.13 1.43 6.99 -51.93 -0.36 1.07 16 5 C 0.21 2.45 5.90 -155.42 -0.92 1.53 16 6 N -0.46 -6.15 9.39 -10.82 -0.10 -6.25 16 7 C -0.03 -0.30 11.87 -17.81 -0.21 -0.52 16 8 C -0.05 -0.44 12.04 -16.56 -0.20 -0.64 16 9 N -0.57 -4.88 5.08 -10.23 -0.05 -4.93 16 10 H 0.42 2.33 8.96 -40.82 -0.37 1.97 16 11 C -0.10 -1.05 4.69 -104.62 -0.49 -1.55 16 12 C -0.07 -0.70 8.12 -39.59 -0.32 -1.03 16 13 C -0.15 -1.46 10.03 -39.51 -0.40 -1.86 16 14 C 0.10 1.02 7.30 -39.42 -0.29 0.73 16 15 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 16 C -0.15 -1.35 10.03 -39.51 -0.40 -1.75 16 17 C -0.08 -0.71 9.14 -39.59 -0.36 -1.07 16 18 S 2.58 45.98 5.36 -107.50 -0.58 45.40 16 19 O -0.95 -19.88 17.13 -57.54 -0.99 -20.87 16 20 O -0.96 -19.32 16.63 -57.54 -0.96 -20.27 16 21 C -0.59 -10.66 5.11 37.16 0.19 -10.47 16 22 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 23 C -0.52 -13.91 9.11 -34.44 -0.31 -14.23 16 24 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 25 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 26 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 27 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 31 H 0.07 1.00 7.45 -51.93 -0.39 0.61 16 32 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.07 0.76 6.49 -51.93 -0.34 0.42 16 34 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 1.41 6.04 -52.49 -0.32 1.10 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 0.96 6.19 -52.49 -0.33 0.63 16 40 H 0.12 1.88 8.02 -51.93 -0.42 1.47 16 41 H 0.12 1.92 8.12 -51.92 -0.42 1.50 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -36.31 382.74 -10.47 -46.78 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.42 Total: 3.05 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.65 Total: -23.79 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.34 Total: -50.32 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.94 Total: -41.14 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.58 Total: 45.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.31 -10.47 -46.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585115435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.679 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds