Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99922 * 2 1 4 4 C 1.40142 * 111.00046 * 123.95017 * 2 1 3 5 5 C 1.35803 * 120.43064 * 299.72667 * 4 2 1 6 6 N 1.35781 * 120.56694 * 179.76507 * 5 4 2 7 7 H 0.97001 * 119.26662 * 180.23098 * 6 5 4 8 8 C 1.35363 * 121.46373 * 0.51879 * 6 5 4 9 9 C 1.35343 * 120.82294 * 359.73931 * 8 6 5 10 10 C 1.41113 * 119.36008 * 0.02562 * 9 8 6 11 11 N 1.34462 * 120.67912 * 180.02562 * 10 9 8 12 12 C 1.33153 * 119.99941 * 355.37106 * 11 10 9 13 13 O 1.21961 * 119.99987 * 64.95997 * 12 11 10 14 14 N 1.34775 * 120.00298 * 244.96613 * 12 11 10 15 15 C 1.47241 * 121.34985 * 179.71600 * 14 12 11 16 16 C 1.53286 * 107.60048 * 116.01372 * 15 14 12 17 17 C 1.50569 * 110.85366 * 47.53939 * 16 15 14 18 18 C 1.41412 * 117.63175 * 160.29654 * 17 16 15 19 19 C 1.41392 * 119.96630 * 358.27849 * 18 17 16 20 20 H 1.08001 * 120.00520 * 328.17634 * 19 18 17 21 21 C 1.39949 * 120.00157 * 148.16903 * 19 18 17 22 22 N 1.30818 * 120.00201 * 167.34906 * 21 19 18 23 23 Si 1.86801 * 119.99611 * 347.35663 * 21 19 18 24 24 H 1.48500 * 109.47134 * 92.49758 * 23 21 19 25 25 H 1.48501 * 109.47023 * 212.49302 * 23 21 19 26 26 H 1.48495 * 109.47075 * 332.49463 * 23 21 19 27 27 C 1.40399 * 120.06678 * 178.31801 * 18 17 16 28 28 C 1.37647 * 119.54078 * 0.41053 * 27 18 17 29 29 C 1.38340 * 119.98969 * 0.17067 * 28 27 18 30 30 C 1.37048 * 122.99824 * 339.60869 * 17 16 15 31 31 C 1.46668 * 121.34431 * 359.97438 * 14 12 11 32 32 H 1.09004 * 109.47344 * 296.04906 * 1 2 3 33 33 H 1.09000 * 109.47414 * 56.04902 * 1 2 3 34 34 H 1.09001 * 109.47107 * 176.04768 * 1 2 3 35 35 H 1.08995 * 109.46741 * 183.95548 * 3 2 1 36 36 H 1.09001 * 109.47074 * 303.95173 * 3 2 1 37 37 H 1.08995 * 109.47330 * 63.94952 * 3 2 1 38 38 H 1.08007 * 119.71590 * 359.97438 * 5 4 2 39 39 H 1.08003 * 119.59097 * 179.71972 * 8 6 5 40 40 H 1.07996 * 120.32041 * 180.02562 * 9 8 6 41 41 H 1.08998 * 109.78076 * 235.60409 * 15 14 12 42 42 H 1.08997 * 109.78009 * 356.41837 * 15 14 12 43 43 H 1.09004 * 109.29724 * 287.12773 * 16 15 14 44 44 H 1.09000 * 109.07759 * 167.81132 * 16 15 14 45 45 H 0.97005 * 120.00148 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.23409 * 180.38995 * 27 18 17 47 47 H 1.07996 * 120.00906 * 180.14952 * 28 27 18 48 48 H 1.07997 * 119.47697 * 179.83025 * 29 28 27 49 49 H 1.09007 * 109.43029 * 344.46724 * 31 14 12 50 50 H 1.09000 * 109.42887 * 104.30812 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9713 -0.7307 1.0853 5 6 1.6757 -0.3620 2.3585 6 7 2.1569 -1.0707 3.4119 7 1 1.9312 -0.7926 4.3134 8 6 2.9493 -2.1534 3.2323 9 6 3.2844 -2.5687 1.9885 10 6 2.7995 -1.8605 0.8684 11 7 3.1154 -2.2502 -0.3791 12 6 3.9666 -3.2569 -0.5667 13 8 3.6701 -4.3822 -0.2015 14 7 5.1557 -3.0323 -1.1599 15 6 6.1217 -4.1222 -1.3765 16 6 6.2931 -4.2958 -2.8898 17 6 6.5107 -2.9654 -3.5606 18 6 7.0987 -2.9678 -4.8467 19 6 7.4926 -4.1889 -5.4409 20 1 7.8360 -5.0046 -4.8220 21 6 7.4375 -4.3405 -6.8310 22 7 8.0252 -5.3605 -7.4016 23 14 6.5248 -3.0862 -7.8718 24 1 7.4720 -2.0367 -8.3262 25 1 5.9306 -3.7617 -9.0533 26 1 5.4462 -2.4631 -7.0634 27 6 7.2925 -1.7589 -5.5338 28 6 6.9143 -0.5745 -4.9432 29 6 6.3508 -0.5808 -3.6798 30 6 6.1535 -1.7731 -2.9872 31 6 5.5422 -1.6912 -1.6108 32 1 -0.3634 0.4513 0.9233 33 1 -0.3634 0.5739 -0.8524 34 1 -0.3633 -1.0252 -0.0708 35 1 3.0827 1.3432 -0.0709 36 1 1.5898 1.9163 -0.8525 37 1 1.7043 1.8724 0.9232 38 1 1.0497 0.5004 2.5345 39 1 3.3190 -2.6923 4.0921 40 1 3.9168 -3.4339 1.8546 41 1 7.0779 -3.8634 -0.9218 42 1 5.7415 -5.0447 -0.9376 43 1 5.3990 -4.7633 -3.3023 44 1 7.1532 -4.9379 -3.0796 45 1 7.9873 -5.4654 -8.3652 46 1 7.7356 -1.7581 -6.5187 47 1 7.0577 0.3597 -5.4659 48 1 6.0596 0.3536 -3.2231 49 1 4.6603 -1.0514 -1.6432 50 1 6.2690 -1.2705 -0.9159 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585123582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = 80.069769 kcal Electronic energy + Delta-G solvation = -33177.998420 eV Core-core repulsion = 28978.513064 eV Total energy + Delta-G solvation = -4199.485356 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 366.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.21671 -39.64773 -38.17465 -37.61992 -35.52824 -34.60815 -33.52998 -31.98870 -31.13124 -30.61262 -30.03753 -28.81382 -27.77995 -25.44455 -25.16827 -24.79954 -23.89243 -22.52967 -22.06666 -20.42432 -20.17429 -19.25643 -18.41716 -17.32284 -17.08162 -16.83366 -16.09988 -16.03296 -15.48181 -15.32365 -15.14684 -14.76065 -14.46755 -14.33849 -14.18373 -13.99682 -13.59986 -13.44919 -13.09755 -12.96060 -12.73384 -12.69738 -12.60737 -12.42153 -11.93545 -11.87786 -11.80785 -11.59996 -11.47421 -11.30195 -11.14484 -10.83623 -10.68950 -10.38375 -10.21496 -9.93919 -9.85883 -9.65115 -9.33815 -9.04404 -8.79967 -8.59658 -8.00016 -7.51655 -7.40015 -7.33873 -6.81261 -4.38160 0.76407 0.97214 2.48793 2.67685 2.69548 3.02624 3.19329 3.30710 3.33239 3.42722 3.62411 3.92397 4.09203 4.10528 4.35934 4.58752 4.68184 4.86324 4.98418 5.04861 5.18055 5.31629 5.36662 5.39912 5.42281 5.60352 5.69053 5.70887 5.74461 5.84137 5.94224 6.00809 6.06603 6.10890 6.21191 6.24896 6.38552 6.46496 6.58112 6.63766 6.73208 6.73485 6.75597 6.97272 6.99198 7.09942 7.19074 7.28419 7.54910 7.72542 7.78895 7.89795 7.98007 8.16952 8.35910 8.46254 8.75054 8.90840 9.07175 10.21138 Molecular weight = 366.18amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.002654 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.961974 B =10547.387550 C =11492.054150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.474 5.474 3 C 0.030 3.970 4 C 0.027 3.973 5 C 0.083 3.917 6 N -0.588 5.588 7 H 0.419 0.581 8 C 0.127 3.873 9 C -0.241 4.241 10 C 0.315 3.685 11 N -0.577 5.577 12 C 0.672 3.328 13 O -0.604 6.604 14 N -0.602 5.602 15 C 0.120 3.880 16 C -0.071 4.071 17 C -0.152 4.152 18 C 0.094 3.906 19 C -0.446 4.446 20 H 0.094 0.906 21 C 0.083 3.917 22 N -0.818 5.818 23 Si 0.913 3.087 24 H -0.272 1.272 25 H -0.295 1.295 26 H -0.244 1.244 27 C -0.242 4.242 28 C -0.080 4.080 29 C -0.231 4.231 30 C -0.064 4.064 31 C 0.163 3.837 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.022 0.978 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.153 0.847 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.283 0.717 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 13.573 24.080 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.195 5.195 3 C -0.116 4.116 4 C -0.076 4.076 5 C -0.049 4.049 6 N -0.193 5.193 7 H 0.254 0.746 8 C -0.003 4.003 9 C -0.269 4.269 10 C 0.148 3.852 11 N -0.310 5.310 12 C 0.375 3.625 13 O -0.484 6.484 14 N -0.336 5.336 15 C -0.003 4.003 16 C -0.108 4.108 17 C -0.154 4.154 18 C 0.091 3.909 19 C -0.475 4.475 20 H 0.112 0.888 21 C -0.134 4.134 22 N -0.443 5.443 23 Si 0.740 3.260 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.167 1.167 27 C -0.261 4.261 28 C -0.098 4.098 29 C -0.251 4.251 30 C -0.065 4.065 31 C 0.040 3.960 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.170 0.830 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.621 12.597 22.582 28.773 hybrid contribution -0.330 0.656 0.598 0.947 sum -12.951 13.253 23.180 29.676 Atomic orbital electron populations 1.22508 0.86079 1.02896 1.00233 1.59315 1.07621 1.13293 1.39244 1.22507 1.01644 0.87253 1.00243 1.17913 1.04090 0.97825 0.87795 1.22262 0.98066 0.96777 0.87804 1.40847 1.43626 1.25314 1.09489 0.74593 1.21720 0.91346 0.87705 0.99514 1.21846 1.08724 1.04823 0.91526 1.18549 0.88512 0.89861 0.88299 1.68695 1.20314 1.21936 1.20018 1.17276 0.79979 0.87147 0.78144 1.90913 1.75805 1.25591 1.56118 1.47635 1.15433 1.10048 1.60453 1.21737 0.90984 0.90435 0.97173 1.20549 1.02063 0.95951 0.92284 1.19281 1.05859 0.92662 0.97549 1.17734 0.88867 0.92919 0.91363 1.19497 1.36896 0.99228 0.91862 0.88842 1.26104 0.93130 0.95701 0.98495 1.69653 1.33713 1.28298 1.12620 0.86314 0.81472 0.79838 0.78338 1.19894 1.22274 1.16725 1.20947 1.10965 0.92900 1.01291 1.20471 0.97932 0.96465 0.94923 1.20195 1.12237 0.95606 0.97055 1.19310 0.99265 0.93552 0.94406 1.20325 0.99382 0.83563 0.92686 0.95968 0.90707 0.91003 0.90862 0.90685 0.95974 0.82058 0.81612 0.82986 0.91701 0.89571 0.91833 0.90270 0.90643 0.88282 0.88878 0.88885 0.88716 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.35 60.07 0.56 0.81 16 2 N -0.47 -5.10 4.77 -186.72 -0.89 -5.99 16 3 C 0.03 0.25 9.38 60.07 0.56 0.81 16 4 C 0.03 0.28 4.78 -83.58 -0.40 -0.12 16 5 C 0.08 0.45 9.76 -16.68 -0.16 0.29 16 6 N -0.59 -1.96 5.24 -12.87 -0.07 -2.02 16 7 H 0.42 -0.35 8.90 -40.82 -0.36 -0.72 16 8 C 0.13 0.73 11.16 -17.03 -0.19 0.54 16 9 C -0.24 -2.78 9.04 -39.52 -0.36 -3.14 16 10 C 0.31 4.47 6.61 -84.28 -0.56 3.92 16 11 N -0.58 -10.88 8.87 -14.53 -0.13 -11.01 16 12 C 0.67 14.11 6.68 -88.36 -0.59 13.52 16 13 O -0.60 -13.99 15.32 4.95 0.08 -13.92 16 14 N -0.60 -12.22 2.93 -180.23 -0.53 -12.75 16 15 C 0.12 2.36 6.48 -3.49 -0.02 2.34 16 16 C -0.07 -1.59 5.30 -27.80 -0.15 -1.74 16 17 C -0.15 -3.72 5.82 -103.91 -0.60 -4.32 16 18 C 0.09 2.48 5.13 -106.68 -0.55 1.94 16 19 C -0.45 -12.40 8.80 -37.74 -0.33 -12.74 16 20 H 0.09 2.68 6.56 -52.49 -0.34 2.34 16 21 C 0.08 2.28 5.46 -17.34 -0.09 2.18 16 22 N -0.82 -22.70 13.93 55.55 0.77 -21.93 16 23 Si 0.91 22.21 24.42 -169.99 -4.15 18.06 16 24 H -0.27 -6.38 6.66 56.52 0.38 -6.01 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.24 -6.19 6.72 56.52 0.38 -5.81 16 27 C -0.24 -6.10 7.02 -38.98 -0.27 -6.38 16 28 C -0.08 -1.80 10.03 -39.76 -0.40 -2.20 16 29 C -0.23 -5.01 9.63 -39.15 -0.38 -5.39 16 30 C -0.06 -1.45 5.82 -104.60 -0.61 -2.05 16 31 C 0.16 3.17 6.17 -5.04 -0.03 3.14 16 32 H 0.02 0.12 7.14 -51.93 -0.37 -0.25 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.02 0.12 7.33 -51.93 -0.38 -0.26 16 38 H 0.16 0.36 6.96 -52.48 -0.37 -0.01 16 39 H 0.17 0.32 8.06 -52.48 -0.42 -0.10 16 40 H 0.15 2.13 6.36 -52.49 -0.33 1.79 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.68 7.07 -51.93 -0.37 1.32 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.08 1.76 6.46 -51.93 -0.34 1.43 16 45 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 46 H 0.10 2.50 4.47 -52.49 -0.23 2.26 16 47 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 48 H 0.09 1.75 8.05 -52.49 -0.42 1.33 16 49 H 0.09 1.84 7.03 -51.93 -0.37 1.48 16 50 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -38.07 396.06 -10.38 -48.45 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.87 Total: 3.75 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -4.57 Total: -8.61 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.84 Total: -53.69 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.15 Total: 18.06 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.07 -10.38 -48.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585123582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.518 kcal (2) G-P(sol) polarization free energy of solvation -38.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds