Wall clock time and date at job start Tue Mar 31 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99829 * 2 1 4 4 C 1.50703 * 109.46921 * 66.04558 * 3 2 1 5 5 H 1.07997 * 119.99885 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99738 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99718 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00017 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.46851 * 89.99979 * 8 6 4 10 10 H 1.48501 * 109.47219 * 209.99500 * 8 6 4 11 11 H 1.48496 * 109.47214 * 329.99794 * 8 6 4 12 12 C 1.38101 * 110.99798 * 236.05270 * 2 1 3 13 13 N 1.32872 * 120.81424 * 63.83727 * 12 2 1 14 14 C 1.32125 * 121.18693 * 180.02562 * 13 12 2 15 15 N 1.31500 * 122.64924 * 359.97438 * 14 13 12 16 16 C 1.33207 * 120.68062 * 0.02562 * 15 14 13 17 17 C 1.40788 * 120.80644 * 243.85667 * 12 2 1 18 18 C 1.41235 * 134.70725 * 359.97438 * 17 12 2 19 19 Br 1.89105 * 125.77047 * 359.97438 * 18 17 12 20 20 N 1.30302 * 108.45071 * 179.97438 * 18 17 12 21 21 N 1.36308 * 134.60423 * 179.97438 * 16 15 14 22 22 C 1.46505 * 125.86068 * 0.02898 * 21 16 15 23 23 C 1.52989 * 109.47528 * 59.99468 * 22 21 16 24 24 C 1.53001 * 109.46828 * 179.97438 * 22 21 16 25 25 C 1.53001 * 109.46957 * 299.99115 * 22 21 16 26 26 H 1.08994 * 109.46791 * 178.21288 * 1 2 3 27 27 H 1.09004 * 109.46987 * 298.20849 * 1 2 3 28 28 H 1.08997 * 109.47286 * 58.20599 * 1 2 3 29 29 H 1.08996 * 109.47113 * 186.04747 * 3 2 1 30 30 H 1.09000 * 109.46934 * 306.05321 * 3 2 1 31 31 H 0.97002 * 119.99946 * 180.02562 * 7 6 4 32 32 H 1.08003 * 118.67158 * 179.97438 * 14 13 12 33 33 H 1.09000 * 109.47160 * 60.00017 * 23 22 21 34 34 H 1.09000 * 109.47195 * 179.97438 * 23 22 21 35 35 H 1.09007 * 109.47508 * 299.99956 * 23 22 21 36 36 H 1.08999 * 109.47027 * 59.99451 * 24 22 21 37 37 H 1.09000 * 109.47046 * 179.97438 * 24 22 21 38 38 H 1.09000 * 109.47146 * 299.99546 * 24 22 21 39 39 H 1.08997 * 109.47158 * 60.00455 * 25 22 21 40 40 H 1.09000 * 109.47072 * 180.02562 * 25 22 21 41 41 H 1.08999 * 109.47211 * 300.00740 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3492 1.5289 7 7 1.7151 3.9387 2.6622 8 14 3.0007 4.2759 0.2314 9 1 2.0641 4.9804 -0.6805 10 1 3.8878 5.2669 0.8918 11 1 3.8238 3.3172 -0.5486 12 6 1.9639 -0.7200 -1.0695 13 7 1.7380 -0.3259 -2.3182 14 6 2.2075 -1.0093 -3.3469 15 7 2.9181 -2.1066 -3.2047 16 6 3.1982 -2.5827 -1.9926 17 6 2.7197 -1.8898 -0.8634 18 6 3.1560 -2.6031 0.2748 19 35 2.8082 -2.1343 2.0736 20 7 3.8386 -3.6388 -0.1242 21 7 3.8879 -3.6609 -1.5236 22 6 4.5644 -4.6696 -2.3429 23 6 5.6372 -3.9949 -3.1998 24 6 5.2195 -5.7103 -1.4325 25 6 3.5434 -5.3569 -3.2517 26 1 -0.3633 -1.0271 -0.0320 27 1 -0.3633 0.4858 0.9057 28 1 -0.3634 0.5414 -0.8734 29 1 3.0797 1.3445 -0.1083 30 1 1.5610 1.9274 -0.8308 31 1 1.9897 4.8548 2.8242 32 1 1.9992 -0.6523 -4.3447 33 1 6.3646 -3.5052 -2.5523 34 1 6.1409 -4.7454 -3.8090 35 1 5.1709 -3.2532 -3.8484 36 1 4.4554 -6.1910 -0.8217 37 1 5.7224 -6.4610 -2.0420 38 1 5.9469 -5.2204 -0.7853 39 1 3.0770 -4.6153 -3.9003 40 1 4.0466 -6.1077 -3.8610 41 1 2.7790 -5.8376 -2.6412 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585134869.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:23 Heat of formation + Delta-G solvation = 137.431118 kcal Electronic energy + Delta-G solvation = -25627.163755 eV Core-core repulsion = 22012.046232 eV Total energy + Delta-G solvation = -3615.117522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 367.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13198 -39.38849 -36.99092 -36.84791 -33.06046 -32.24679 -31.57634 -30.47083 -29.43623 -28.01261 -27.68159 -27.63909 -25.77245 -24.14574 -23.22126 -21.73757 -21.05617 -19.31292 -17.80605 -17.57820 -16.97552 -16.11569 -16.06402 -15.17310 -14.87089 -14.49926 -14.35206 -14.28908 -13.88490 -13.60619 -13.16041 -13.08982 -12.70119 -12.59791 -12.52165 -12.35126 -12.01755 -11.76836 -11.74890 -11.60107 -11.34359 -11.28604 -11.06715 -10.93742 -10.80102 -10.54677 -10.07054 -9.98279 -9.88099 -9.41684 -9.15393 -9.12992 -8.61239 -8.54739 -7.89278 -6.08199 -4.06124 0.55069 1.17292 1.29509 2.17907 2.23277 3.28474 3.35808 3.39489 3.82714 3.90119 3.99958 4.14972 4.40480 4.49047 4.51852 4.60695 4.80218 4.86571 5.09446 5.23180 5.24011 5.26801 5.37649 5.43345 5.47258 5.51851 5.64693 5.78449 5.86979 5.92987 6.00582 6.16694 6.21747 6.56304 6.58452 6.79333 6.82993 7.07931 7.25654 7.47714 7.56066 7.88292 8.22862 8.56047 8.99353 9.52358 11.04267 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.004301 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.139850 B = 6508.503532 C = 7662.122256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.483 5.483 3 C 0.174 3.826 4 C -0.507 4.507 5 H 0.087 0.913 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.869 3.131 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.463 3.537 13 N -0.577 5.577 14 C 0.355 3.645 15 N -0.549 5.549 16 C 0.353 3.647 17 C -0.247 4.247 18 C 0.134 3.866 19 Br 0.080 6.920 20 N -0.220 5.220 21 N -0.367 5.367 22 C 0.191 3.809 23 C -0.162 4.162 24 C -0.144 4.144 25 C -0.161 4.161 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.036 0.964 29 H 0.025 0.975 30 H 0.006 0.994 31 H 0.264 0.736 32 H 0.201 0.799 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -18.794 -9.861 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.206 5.206 3 C 0.050 3.950 4 C -0.546 4.546 5 H 0.104 0.896 6 C -0.127 4.127 7 N -0.534 5.534 8 Si 0.697 3.303 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 C 0.217 3.783 13 N -0.298 5.298 14 C 0.062 3.938 15 N -0.272 5.272 16 C 0.106 3.894 17 C -0.262 4.262 18 C -0.122 4.122 19 Br 0.161 6.839 20 N -0.037 5.037 21 N -0.159 5.159 22 C 0.109 3.891 23 C -0.221 4.221 24 C -0.202 4.202 25 C -0.219 4.219 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.905 -19.583 -9.315 22.233 hybrid contribution 0.200 1.342 -1.233 1.834 sum 5.106 -18.240 -10.548 21.681 Atomic orbital electron populations 1.22246 0.84451 1.00178 1.03132 1.60169 1.09576 1.18380 1.32490 1.20258 0.95099 0.81221 0.98445 1.20888 1.36016 0.97162 1.00507 0.89551 1.24787 0.95558 0.97213 0.95186 1.69867 1.46596 1.13281 1.23704 0.86952 0.80819 0.80258 0.82318 1.20061 1.21089 1.19362 1.20264 0.83600 0.86406 0.88024 1.68906 1.26565 1.34408 0.99962 1.24764 0.85979 0.84590 0.98461 1.67602 1.20675 1.16678 1.22231 1.19009 0.91739 0.88622 0.90024 1.19681 1.11232 1.01962 0.93368 1.23926 0.98829 0.94370 0.95066 1.96949 1.93687 1.91126 1.02141 1.77037 1.18626 1.18936 0.89055 1.48794 1.44442 1.20423 1.02268 1.20770 0.92270 0.86327 0.89688 1.22266 0.97850 1.01880 1.00062 1.21936 1.01414 0.97465 0.99364 1.22256 0.98858 1.01212 0.99613 0.93357 0.88755 0.94578 0.95673 0.97587 0.92561 0.78304 0.91970 0.90278 0.90492 0.91238 0.90703 0.91193 0.90498 0.90291 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 9.17 60.07 0.55 1.42 16 2 N -0.48 -9.99 4.02 -182.04 -0.73 -10.72 16 3 C 0.17 4.17 3.54 -4.97 -0.02 4.15 16 4 C -0.51 -13.74 9.09 -34.44 -0.31 -14.06 16 5 H 0.09 2.50 7.34 -52.49 -0.39 2.11 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 8 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 12 C 0.46 8.92 5.31 -154.86 -0.82 8.09 16 13 N -0.58 -10.33 9.97 -13.63 -0.14 -10.47 16 14 C 0.35 5.17 12.24 -92.12 -1.13 4.05 16 15 N -0.55 -8.20 9.38 -13.97 -0.13 -8.33 16 16 C 0.35 5.76 7.11 -156.23 -1.11 4.65 16 17 C -0.25 -4.51 6.16 -106.80 -0.66 -5.16 16 18 C 0.13 2.33 7.73 -17.06 -0.13 2.20 16 19 Br 0.08 1.34 33.40 -68.01 -2.27 -0.93 16 20 N -0.22 -3.52 11.51 32.09 0.37 -3.15 16 21 N -0.37 -5.36 3.49 -47.77 -0.17 -5.53 16 22 C 0.19 2.05 1.21 -131.82 -0.16 1.89 16 23 C -0.16 -1.57 8.52 37.15 0.32 -1.26 16 24 C -0.14 -1.30 7.97 37.16 0.30 -1.00 16 25 C -0.16 -1.49 8.52 37.16 0.32 -1.17 16 26 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 27 H 0.09 1.84 6.91 -51.93 -0.36 1.48 16 28 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.03 0.64 7.11 -51.93 -0.37 0.27 16 30 H 0.01 0.15 7.52 -51.93 -0.39 -0.24 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.20 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.81 7.42 -51.93 -0.39 0.43 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -30.82 359.25 -10.17 -40.99 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -5.66 Total: -3.92 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.96 Total: 5.80 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.02 Total: -64.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 35 Polarization: 1.34 SS G_CDS: -2.27 Total: -0.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.82 -10.17 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585134869.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.421 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds