Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31532 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48494 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47239 * 299.99969 * 3 2 1 6 6 H 1.48502 * 109.47166 * 59.99824 * 3 2 1 7 7 C 1.38676 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99943 * 179.97438 * 7 2 1 9 9 O 1.34782 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.35561 * 116.99977 * 174.87793 * 9 7 2 11 11 C 1.38738 * 120.16961 * 5.94070 * 10 9 7 12 12 C 1.38100 * 120.09586 * 179.97438 * 11 10 9 13 13 C 1.38583 * 120.43649 * 0.02562 * 12 11 10 14 14 C 1.37802 * 120.34059 * 359.71939 * 13 12 11 15 15 C 1.39846 * 119.89814 * 0.55791 * 14 13 12 16 16 C 1.47004 * 120.21848 * 179.71780 * 15 14 13 17 17 C 1.34863 * 120.00171 * 312.26075 * 16 15 14 18 18 C 1.46460 * 120.00070 * 349.62260 * 17 16 15 19 19 N 1.29655 * 124.88739 * 353.16574 * 18 17 16 20 20 C 1.33447 * 118.07139 * 179.97438 * 19 18 17 21 21 C 1.41650 * 128.49721 * 179.97438 * 20 19 18 22 22 C 1.35600 * 120.76228 * 180.02562 * 21 20 19 23 23 C 1.40295 * 120.62748 * 0.02562 * 22 21 20 24 24 C 1.47374 * 120.15993 * 179.97438 * 23 22 21 25 25 O 1.21518 * 119.99833 * 180.02562 * 24 23 22 26 26 O 1.34774 * 119.99884 * 0.02562 * 24 23 22 27 27 C 1.39328 * 119.67846 * 0.02562 * 23 22 21 28 28 C 1.38853 * 119.94307 * 359.97438 * 27 23 22 29 29 S 1.75836 * 124.89368 * 172.86421 * 18 17 16 30 30 H 0.97000 * 120.00184 * 0.02562 * 1 2 3 31 31 H 1.08007 * 119.95287 * 359.95504 * 11 10 9 32 32 H 1.08001 * 119.77979 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.82550 * 180.02562 * 13 12 11 34 34 H 1.08005 * 120.05532 * 180.30225 * 14 13 12 35 35 H 1.08003 * 119.99956 * 131.98321 * 16 15 14 36 36 H 1.08004 * 120.00079 * 169.61234 * 17 16 15 37 37 H 1.07994 * 119.61894 * 0.02729 * 21 20 19 38 38 H 1.08004 * 119.68833 * 179.97438 * 22 21 20 39 39 H 0.96696 * 117.00207 * 180.02562 * 26 24 23 40 40 H 1.08000 * 120.02813 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8906 2.3965 1.2125 7 6 2.0087 -1.2010 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3348 -2.3682 0.0005 10 6 2.0690 -3.5027 -0.1068 11 6 3.4548 -3.4409 -0.0864 12 6 4.2013 -4.5977 -0.1953 13 6 3.5755 -5.8273 -0.3260 14 6 2.2001 -5.9101 -0.3431 15 6 1.4304 -4.7470 -0.2397 16 6 -0.0372 -4.8266 -0.2634 17 6 -0.6576 -5.5611 -1.2091 18 6 0.1048 -6.0915 -2.3416 19 7 1.3447 -5.8115 -2.5970 20 6 1.9074 -6.3735 -3.6686 21 6 3.2313 -6.2241 -4.1498 22 6 3.6411 -6.8753 -5.2664 23 6 2.7610 -7.7113 -5.9697 24 6 3.2171 -8.4137 -7.1824 25 8 2.4522 -9.1367 -7.7897 26 8 4.4825 -8.2540 -7.6179 27 6 1.4534 -7.8735 -5.5168 28 6 1.0284 -7.2092 -4.3740 29 16 -0.5273 -7.2056 -3.5462 30 1 -0.4850 0.8400 -0.0004 31 1 3.9507 -2.4867 0.0144 32 1 5.2798 -4.5436 -0.1793 33 1 4.1689 -6.7257 -0.4100 34 1 1.7172 -6.8712 -0.4403 35 1 -0.6186 -4.3004 0.4794 36 1 -1.7167 -5.7583 -1.1314 37 1 3.9223 -5.5842 -3.6212 38 1 4.6544 -6.7485 -5.6181 39 1 4.7354 -8.7347 -8.4179 40 1 0.7710 -8.5154 -6.0542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606442866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = -1.105156 kcal Electronic energy + Delta-G solvation = -29069.171369 eV Core-core repulsion = 24907.241272 eV Total energy + Delta-G solvation = -4161.930096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 367.071 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77476 -39.93051 -39.05728 -37.20504 -36.35518 -36.16156 -33.86617 -32.36142 -31.32718 -30.21355 -29.27843 -28.60003 -25.55436 -25.37050 -23.86202 -23.29147 -21.74458 -21.47463 -20.91577 -19.21841 -18.56757 -18.06748 -17.98937 -17.29467 -16.90832 -15.87169 -15.80717 -15.60449 -14.94733 -14.69669 -14.65864 -14.38699 -14.17490 -14.09105 -13.88632 -13.68058 -13.34960 -13.03038 -12.72917 -12.55777 -12.48815 -12.15967 -11.90967 -11.75728 -11.71755 -11.41014 -10.99211 -10.93706 -10.90195 -10.76754 -10.65699 -10.48198 -10.22508 -9.79916 -9.46671 -9.40422 -8.90414 -8.40006 -8.24506 -7.53681 -7.10435 -6.53330 -4.09780 -0.15615 1.05503 1.21363 1.28978 1.67988 2.04056 2.43171 2.60916 2.78202 3.07792 3.08777 3.10257 3.14985 3.70287 3.90252 4.00911 4.50995 4.59303 4.75465 4.89113 5.00410 5.05975 5.09825 5.20389 5.29965 5.43437 5.63074 5.68220 5.76085 5.83011 5.94958 6.05275 6.08295 6.16432 6.22061 6.22248 6.47370 6.59297 6.65738 6.70335 6.86737 7.07278 7.25683 7.36432 7.37549 7.62614 7.79137 7.81939 7.91903 8.92957 9.61320 10.64237 Molecular weight = 367.07amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.002732 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.012713 B =10247.904147 C =10895.377820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.170 6.170 10 C 0.178 3.822 11 C -0.235 4.235 12 C -0.060 4.060 13 C -0.217 4.217 14 C 0.000 4.000 15 C -0.158 4.158 16 C 0.051 3.949 17 C -0.185 4.185 18 C 0.202 3.798 19 N -0.455 5.455 20 C 0.147 3.853 21 C -0.080 4.080 22 C -0.058 4.058 23 C -0.138 4.138 24 C 0.535 3.465 25 O -0.519 6.519 26 O -0.510 6.510 27 C 0.011 3.989 28 C -0.210 4.210 29 S 0.045 5.955 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.414 0.586 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -14.066 -7.699 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.465 4.465 8 H 0.110 0.890 9 O -0.073 6.073 10 C 0.123 3.877 11 C -0.254 4.254 12 C -0.079 4.079 13 C -0.236 4.236 14 C -0.018 4.018 15 C -0.160 4.160 16 C 0.026 3.974 17 C -0.208 4.208 18 C -0.074 4.074 19 N -0.167 5.167 20 C 0.022 3.978 21 C -0.101 4.101 22 C -0.080 4.080 23 C -0.143 4.143 24 C 0.380 3.620 25 O -0.410 6.410 26 O -0.322 6.322 27 C -0.011 4.011 28 C -0.329 4.329 29 S 0.305 5.695 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.272 0.728 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.030 -13.987 -7.333 16.080 hybrid contribution 1.446 0.676 -0.983 1.875 sum 4.477 -13.311 -8.316 16.321 Atomic orbital electron populations 1.70019 1.05941 1.27694 1.45626 1.25275 0.95841 0.98814 0.96447 0.85663 0.79219 0.80380 0.78303 1.19052 1.20126 1.20097 1.21382 0.91872 0.80658 1.52638 0.88953 1.83870 1.34599 1.11481 1.77304 1.19344 0.90049 0.87028 0.91238 1.21056 0.93593 0.98944 1.11841 1.20790 0.98264 0.92334 0.96492 1.20362 0.94100 0.96712 1.12397 1.20407 0.93226 0.95234 0.92981 1.17818 0.91785 0.91289 1.15120 1.22378 0.93781 0.87739 0.93491 1.21082 0.98178 1.07583 0.93975 1.25975 0.90840 0.93386 0.97201 1.67023 1.08909 1.24263 1.16476 1.19546 0.95344 0.93032 0.89899 1.20479 0.93064 1.00265 0.96247 1.20806 0.99743 0.93856 0.93573 1.18707 0.94918 1.04275 0.96371 1.20649 0.79292 0.78306 0.83752 1.90897 1.55280 1.37484 1.57304 1.84575 1.30746 1.69266 1.47600 1.20299 0.94109 0.94844 0.91883 1.23560 0.98155 1.07926 1.03276 1.84886 1.11766 1.48300 1.24579 0.91988 0.85640 0.87740 0.88033 0.88316 0.84673 0.84237 0.83862 0.83736 0.72776 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.05 13.67 55.48 0.76 -23.29 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -10.36 9.49 30.89 0.29 -10.07 16 8 H 0.09 2.30 5.21 -52.48 -0.27 2.02 16 9 O -0.17 -4.53 9.21 0.77 0.01 -4.52 16 10 C 0.18 4.05 6.66 -38.55 -0.26 3.80 16 11 C -0.24 -4.87 9.16 -39.45 -0.36 -5.23 16 12 C -0.06 -1.05 10.03 -39.50 -0.40 -1.45 16 13 C -0.22 -3.62 10.02 -39.61 -0.40 -4.01 16 14 C 0.00 0.01 6.58 -39.14 -0.26 -0.25 16 15 C -0.16 -3.11 4.47 -104.90 -0.47 -3.58 16 16 C 0.05 0.90 9.34 -37.23 -0.35 0.55 16 17 C -0.19 -2.83 10.07 -37.47 -0.38 -3.21 16 18 C 0.20 3.22 6.39 -15.16 -0.10 3.12 16 19 N -0.46 -7.88 6.08 -8.76 -0.05 -7.94 16 20 C 0.15 2.30 6.92 -85.08 -0.59 1.71 16 21 C -0.08 -1.08 10.03 -39.22 -0.39 -1.48 16 22 C -0.06 -0.66 9.51 -39.75 -0.38 -1.04 16 23 C -0.14 -1.66 5.87 -105.00 -0.62 -2.27 16 24 C 0.53 5.96 8.26 34.45 0.28 6.25 16 25 O -0.52 -7.07 17.12 -19.28 -0.33 -7.40 16 26 O -0.51 -4.00 12.67 -40.69 -0.52 -4.52 16 27 C 0.01 0.14 9.61 -38.95 -0.37 -0.24 16 28 C -0.21 -2.99 6.52 -38.57 -0.25 -3.25 16 29 S 0.05 0.60 23.36 -107.50 -2.51 -1.91 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.13 2.62 5.64 -52.48 -0.30 2.32 16 32 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.10 1.61 7.37 -52.48 -0.39 1.22 16 35 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 36 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 37 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.14 1.29 7.60 -52.48 -0.40 0.89 16 39 H 0.41 1.33 9.11 45.56 0.42 1.74 16 40 H 0.14 1.65 7.64 -52.49 -0.40 1.25 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -31.87 368.59 -9.78 -41.66 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.59 Total: 7.16 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -5.08 Total: -19.65 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.71 Total: -31.23 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.84 Total: -16.44 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.51 Total: -1.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.87 -9.78 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606442866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.551 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds