Wall clock time and date at job start Tue Mar 31 2020 04:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99991 * 2 1 4 4 H 1.48504 * 109.47088 * 89.99899 * 3 2 1 5 5 H 1.48499 * 109.47350 * 210.00190 * 3 2 1 6 6 H 1.48503 * 109.47211 * 330.00193 * 3 2 1 7 7 C 1.37873 * 120.00212 * 180.28248 * 2 1 3 8 8 H 1.07998 * 120.00071 * 359.71462 * 7 2 1 9 9 C 1.50703 * 120.00350 * 179.72765 * 7 2 1 10 10 N 1.46496 * 109.47377 * 179.97438 * 9 7 2 11 11 C 1.34513 * 125.19737 * 124.31587 * 10 9 7 12 12 C 1.37945 * 107.85479 * 179.97438 * 11 10 9 13 13 C 1.47169 * 126.79038 * 179.97438 * 12 11 10 14 14 C 1.34512 * 119.99707 * 320.43390 * 13 12 11 15 15 C 1.47084 * 120.00009 * 349.89816 * 14 13 12 16 16 C 1.40265 * 120.59387 * 174.06153 * 15 14 13 17 17 C 1.38101 * 118.25643 * 180.02562 * 16 15 14 18 18 N 1.32573 * 119.23408 * 0.02562 * 17 16 15 19 19 C 1.31834 * 121.15690 * 0.02562 * 18 17 16 20 20 N 1.31625 * 121.92249 * 359.71445 * 19 18 17 21 21 C 1.46579 * 106.42144 * 0.02562 * 12 11 10 22 22 C 1.48253 * 126.49155 * 180.02562 * 21 12 11 23 23 C 1.39410 * 120.11087 * 324.72969 * 22 21 12 24 24 C 1.37974 * 119.88463 * 179.69759 * 23 22 21 25 25 C 1.38447 * 120.11519 * 0.59388 * 24 23 22 26 26 Cl 1.73597 * 119.88701 * 179.70268 * 25 24 23 27 27 C 1.38455 * 120.22817 * 359.67798 * 25 24 23 28 28 C 1.37982 * 120.11052 * 0.02562 * 27 25 24 29 29 N 1.31460 * 107.03210 * 359.71952 * 21 12 11 30 30 H 0.96998 * 120.00257 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46826 * 299.99099 * 9 7 2 32 32 H 1.08999 * 109.47165 * 59.99084 * 9 7 2 33 33 H 1.08002 * 126.06928 * 0.02562 * 11 10 9 34 34 H 1.07993 * 120.00116 * 140.43805 * 13 12 11 35 35 H 1.07998 * 119.99887 * 169.90580 * 14 13 12 36 36 H 1.08006 * 120.87700 * 359.97438 * 16 15 14 37 37 H 1.07995 * 120.38648 * 180.02562 * 17 16 15 38 38 H 1.07997 * 119.03429 * 180.02562 * 19 18 17 39 39 H 1.08002 * 120.05331 * 359.97438 * 23 22 21 40 40 H 1.07999 * 119.94397 * 180.26945 * 24 23 22 41 41 H 1.07995 * 119.94351 * 180.02562 * 27 25 24 42 42 H 1.07998 * 120.05106 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0059 8 1 1.4646 -2.1293 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5751 -0.0170 11 6 4.8388 -3.0976 -0.9294 12 6 5.0611 -4.4169 -0.5932 13 6 5.9138 -5.3778 -1.3111 14 6 5.9321 -5.3867 -2.6561 15 6 4.9455 -4.5986 -3.4102 16 6 5.0284 -4.4989 -4.8069 17 6 4.0768 -3.7459 -5.4662 18 7 3.1250 -3.1467 -4.7644 19 6 3.0730 -3.2576 -3.4518 20 7 3.9530 -3.9675 -2.7779 21 6 4.2790 -4.6727 0.6199 22 6 4.1967 -5.9535 1.3620 23 6 4.2272 -7.1646 0.6723 24 6 4.1565 -8.3540 1.3682 25 6 4.0430 -8.3458 2.7479 26 17 3.9468 -9.8456 3.6169 27 6 4.0066 -7.1456 3.4373 28 6 4.0828 -5.9508 2.7513 29 7 3.6696 -3.5497 0.9291 30 1 -0.4850 0.8400 0.0004 31 1 3.8712 -0.6780 -0.9024 32 1 3.8785 -0.6823 0.8776 33 1 5.2637 -2.5765 -1.7747 34 1 6.5247 -6.0758 -0.7581 35 1 6.6712 -5.9726 -3.1822 36 1 5.8162 -4.9973 -5.3523 37 1 4.1077 -3.6463 -6.5411 38 1 2.2824 -2.7553 -2.9143 39 1 4.3105 -7.1720 -0.4045 40 1 4.1844 -9.2929 0.8352 41 1 3.9185 -7.1446 4.5136 42 1 4.0547 -5.0152 3.2900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606443798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:56 Heat of formation + Delta-G solvation = 181.448706 kcal Electronic energy + Delta-G solvation = -29260.945111 eV Core-core repulsion = 25234.898851 eV Total energy + Delta-G solvation = -4026.046260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91819 -40.11531 -38.94660 -36.51641 -35.37000 -33.75867 -32.63564 -32.23176 -31.48615 -30.99117 -30.31598 -28.75331 -27.09190 -24.46132 -24.03075 -23.57947 -22.83274 -22.12585 -21.04307 -19.52657 -19.01422 -17.51283 -17.12454 -16.93654 -16.54594 -15.82533 -15.40400 -15.26783 -15.07056 -14.76071 -14.54359 -14.18962 -13.89502 -13.72231 -13.55041 -13.54102 -13.27347 -13.02461 -12.64669 -12.53964 -12.27279 -11.91092 -11.62670 -11.54048 -11.49768 -11.17380 -11.03938 -10.87177 -10.86118 -10.61590 -10.30235 -10.04069 -9.86526 -9.69749 -9.32860 -9.06788 -9.02364 -8.79466 -8.69813 -7.97668 -7.06333 -6.27712 -4.30868 0.65245 0.98253 1.16231 1.31337 2.06817 2.28091 2.79832 3.11593 3.16204 3.18140 3.29831 3.39085 3.90566 4.11139 4.18432 4.32484 4.43455 4.60895 4.68892 4.79832 4.86283 4.99824 5.09928 5.16350 5.23350 5.33453 5.34296 5.42332 5.48931 5.64333 5.75161 5.80317 5.93895 6.00194 6.13674 6.20815 6.21669 6.37625 6.46671 6.49951 6.59938 6.70770 6.74656 6.82362 7.11133 7.26057 7.29825 7.67839 8.26491 8.37162 8.44473 8.82104 9.26944 10.84438 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.003428 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.729262 B = 8166.321674 C =10923.492762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.228 3.772 10 N -0.320 5.320 11 C 0.157 3.843 12 C -0.247 4.247 13 C 0.036 3.964 14 C -0.192 4.192 15 C 0.214 3.786 16 C -0.236 4.236 17 C 0.141 3.859 18 N -0.533 5.533 19 C 0.301 3.699 20 N -0.495 5.495 21 C 0.098 3.902 22 C 0.018 3.982 23 C -0.088 4.088 24 C -0.112 4.112 25 C -0.038 4.038 26 Cl -0.081 7.081 27 C -0.110 4.110 28 C -0.083 4.083 29 N -0.259 5.259 30 H 0.269 0.731 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.199 0.801 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.185 -14.224 -3.385 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.106 0.894 9 C 0.109 3.891 10 N -0.097 5.097 11 C 0.006 3.994 12 C -0.259 4.259 13 C 0.014 3.986 14 C -0.212 4.212 15 C 0.070 3.930 16 C -0.259 4.259 17 C -0.023 4.023 18 N -0.247 5.247 19 C 0.014 3.986 20 N -0.208 5.208 21 C -0.068 4.068 22 C 0.016 3.984 23 C -0.107 4.107 24 C -0.130 4.130 25 C -0.065 4.065 26 Cl -0.052 7.052 27 C -0.129 4.129 28 C -0.102 4.102 29 N -0.079 5.079 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.171 0.829 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.215 0.785 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.363 -12.933 -2.017 18.005 hybrid contribution 1.342 0.144 -1.208 1.811 sum 13.705 -12.789 -3.225 19.020 Atomic orbital electron populations 1.69858 1.06083 1.27330 1.48704 1.24796 0.94800 0.98619 0.94217 0.86963 0.80228 0.84181 0.78992 1.19703 1.19163 1.20542 1.21027 0.87399 0.95699 1.53030 0.89427 1.20078 0.97797 0.73151 0.98036 1.48603 1.32225 1.10998 1.17902 1.22267 0.91662 0.93910 0.91593 1.19572 1.12110 0.93853 1.00386 1.21516 0.91912 0.92244 0.92949 1.21566 1.00676 1.05120 0.93844 1.20587 0.91455 0.90474 0.90437 1.22823 1.02878 1.04127 0.96037 1.23049 0.88787 0.89962 1.00548 1.68486 1.24072 1.22378 1.09811 1.25374 0.94839 0.91475 0.86959 1.69531 1.03524 1.08928 1.38817 1.21598 0.98432 0.92322 0.94453 1.17896 0.98429 0.89957 0.92124 1.21156 0.98856 0.90404 1.00312 1.20901 1.01388 0.98879 0.91863 1.20960 1.06133 0.86834 0.92543 1.98354 1.96788 1.33152 1.76903 1.20962 1.01049 0.90445 1.00454 1.21273 0.97629 0.98053 0.93281 1.77390 1.20959 0.96294 1.13287 0.92113 0.93472 0.94479 0.82939 0.86098 0.85092 0.84221 0.82307 0.78461 0.84735 0.84941 0.84887 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.43 0.77 -24.93 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 19.71 27.47 -169.99 -4.67 15.04 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.27 -5.65 6.54 56.52 0.37 -5.28 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.23 9.78 -34.44 -0.34 -14.57 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 C 0.23 5.11 5.28 -5.19 -0.03 5.08 16 10 N -0.32 -6.63 3.62 -61.95 -0.22 -6.85 16 11 C 0.16 2.76 7.79 -16.48 -0.13 2.63 16 12 C -0.25 -3.95 4.95 -103.02 -0.51 -4.46 16 13 C 0.04 0.43 8.39 -37.27 -0.31 0.12 16 14 C -0.19 -2.11 9.94 -37.31 -0.37 -2.48 16 15 C 0.21 2.84 6.16 -82.78 -0.51 2.33 16 16 C -0.24 -2.62 9.94 -38.87 -0.39 -3.00 16 17 C 0.14 1.71 11.29 -17.28 -0.20 1.52 16 18 N -0.53 -8.40 10.43 -14.68 -0.15 -8.56 16 19 C 0.30 5.16 12.20 -92.26 -1.13 4.03 16 20 N -0.49 -8.05 4.68 -11.27 -0.05 -8.10 16 21 C 0.10 1.73 6.94 -80.55 -0.56 1.18 16 22 C 0.02 0.27 5.84 -104.91 -0.61 -0.34 16 23 C -0.09 -1.11 9.16 -39.24 -0.36 -1.47 16 24 C -0.11 -1.25 9.81 -39.60 -0.39 -1.64 16 25 C -0.04 -0.44 6.32 -39.42 -0.25 -0.69 16 26 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 27 C -0.11 -1.32 9.81 -39.60 -0.39 -1.71 16 28 C -0.08 -1.15 9.76 -39.24 -0.38 -1.53 16 29 N -0.26 -5.48 12.30 34.58 0.43 -5.05 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 31 H 0.05 1.00 7.10 -51.93 -0.37 0.63 16 32 H 0.04 0.83 7.57 -51.93 -0.39 0.43 16 33 H 0.15 2.49 7.14 -52.49 -0.37 2.12 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.20 3.74 8.06 -52.49 -0.42 3.31 16 39 H 0.13 1.60 6.86 -52.49 -0.36 1.24 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -30.79 380.47 -11.08 -41.87 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.47 Total: 6.14 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -6.94 Total: -12.93 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.77 Total: -53.49 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.67 Total: 15.04 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.79 -11.08 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606443798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.316 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds