Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 120.00185 * 2 1 4 4 H 1.08001 * 120.00460 * 144.21588 * 3 2 1 5 5 C 1.38821 * 119.99523 * 324.21536 * 3 2 1 6 6 N 1.31615 * 119.99787 * 157.89485 * 5 3 2 7 7 Si 1.86795 * 120.00086 * 337.89242 * 5 3 2 8 8 H 1.48498 * 109.47255 * 95.58583 * 7 5 3 9 9 H 1.48501 * 109.47226 * 215.58739 * 7 5 3 10 10 H 1.48505 * 109.47268 * 335.58823 * 7 5 3 11 11 S 1.65607 * 119.99889 * 179.97438 * 2 1 3 12 12 O 1.42095 * 106.40503 * 336.46055 * 11 2 1 13 13 O 1.42095 * 106.39906 * 203.54045 * 11 2 1 14 14 C 1.76195 * 107.21627 * 90.00293 * 11 2 1 15 15 C 1.38293 * 119.92811 * 89.99926 * 14 11 2 16 16 C 1.38104 * 120.07546 * 180.02562 * 15 14 11 17 17 C 1.38908 * 119.92518 * 359.97438 * 16 15 14 18 18 N 1.39678 * 120.07297 * 179.97438 * 17 16 15 19 19 C 1.46496 * 119.99633 * 180.27693 * 18 17 16 20 20 C 1.53000 * 109.46918 * 179.72798 * 19 18 17 21 21 N 1.46497 * 109.47470 * 180.02562 * 20 19 18 22 22 C 1.34780 * 120.00362 * 180.02562 * 21 20 19 23 23 O 1.21275 * 120.00066 * 359.97438 * 22 21 20 24 24 C 1.50697 * 120.00084 * 180.02562 * 22 21 20 25 25 C 1.53004 * 117.49744 * 248.62119 * 24 22 21 26 26 C 1.52999 * 59.99913 * 252.50979 * 25 24 22 27 27 C 1.38910 * 119.85292 * 0.25670 * 17 16 15 28 28 C 1.38104 * 119.92299 * 359.48906 * 27 17 16 29 29 H 1.08994 * 109.47224 * 267.54567 * 1 2 3 30 30 H 1.08996 * 109.46931 * 27.55042 * 1 2 3 31 31 H 1.09009 * 109.46820 * 147.54817 * 1 2 3 32 32 H 0.96999 * 119.99844 * 179.97438 * 6 5 3 33 33 H 1.07998 * 119.95751 * 359.97438 * 15 14 11 34 34 H 1.08002 * 120.03349 * 179.97438 * 16 15 14 35 35 H 0.96991 * 119.99862 * 0.02562 * 18 17 16 36 36 H 1.09000 * 109.47587 * 299.72334 * 19 18 17 37 37 H 1.08997 * 109.47181 * 59.73026 * 19 18 17 38 38 H 1.09001 * 109.47095 * 299.99916 * 20 19 18 39 39 H 1.08997 * 109.47009 * 60.00122 * 20 19 18 40 40 H 0.97001 * 120.00034 * 359.97438 * 21 20 19 41 41 H 1.09000 * 115.55351 * 34.32583 * 24 22 21 42 42 H 1.09000 * 117.49810 * 359.97438 * 25 24 22 43 43 H 1.08996 * 117.50395 * 145.01886 * 25 24 22 44 44 H 1.09008 * 117.49750 * 252.51000 * 26 25 24 45 45 H 1.08997 * 117.52046 * 107.48330 * 26 25 24 46 46 H 1.07997 * 120.04007 * 179.72337 * 27 17 16 47 47 H 1.08005 * 119.96473 * 180.25267 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0768 1.2742 0.5469 5 6 1.6521 2.2746 -0.7030 6 7 2.0273 3.4939 -0.3796 7 14 0.4502 2.0089 -2.1080 8 1 -0.9391 2.1635 -1.6069 9 1 0.7061 3.0101 -3.1744 10 1 0.6280 0.6416 -2.6598 11 16 2.2930 -1.4342 0.0006 12 8 1.4114 -2.4063 0.5455 13 8 3.5759 -1.1566 0.5450 14 6 2.5538 -1.8866 -1.6822 15 6 3.6939 -1.4644 -2.3413 16 6 3.9012 -1.8168 -3.6605 17 6 2.9632 -2.5965 -4.3251 18 7 3.1694 -2.9542 -5.6594 19 6 2.1761 -3.7715 -6.3605 20 6 2.6376 -4.0124 -7.7992 21 7 1.6441 -4.8292 -8.5006 22 6 1.8407 -5.1701 -9.7897 23 8 2.8398 -4.8003 -10.3692 24 6 0.8184 -6.0098 -10.5113 25 6 1.2172 -7.4375 -10.8902 26 6 1.0992 -6.3633 -11.9732 27 6 1.8168 -3.0148 -3.6615 28 6 1.6183 -2.6633 -2.3408 29 1 -0.3633 -0.0440 1.0267 30 1 -0.3633 0.9111 -0.4753 31 1 -0.3633 -0.8673 -0.5515 32 1 1.6799 4.2546 -0.8711 33 1 4.4226 -0.8579 -1.8241 34 1 4.7916 -1.4864 -4.1748 35 1 3.9684 -2.6584 -6.1229 36 1 2.0663 -4.7280 -5.8494 37 1 1.2181 -3.2517 -6.3685 38 1 2.7474 -3.0560 -8.3105 39 1 3.5956 -4.5322 -7.7913 40 1 0.8452 -5.1253 -8.0371 41 1 -0.2191 -5.8357 -10.2260 42 1 2.2192 -7.7692 -10.6179 43 1 0.4422 -8.2031 -10.8540 44 1 0.2464 -6.4220 -12.6496 45 1 2.0231 -5.9880 -12.4132 46 1 1.0834 -3.6174 -4.1766 47 1 0.7291 -2.9916 -1.8229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952883536.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = -38.221167 kcal Electronic energy + Delta-G solvation = -30073.441703 eV Core-core repulsion = 25770.719061 eV Total energy + Delta-G solvation = -4302.722641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 367.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.45113 -39.24730 -37.11430 -36.21377 -35.94878 -35.77092 -34.65951 -34.50932 -32.05727 -30.90446 -30.43417 -27.89135 -26.50998 -25.08160 -23.86954 -23.34123 -22.95415 -22.18254 -21.57830 -20.52335 -18.42814 -18.04667 -17.71982 -17.29430 -16.88134 -16.31144 -16.29919 -16.13843 -15.70404 -15.49211 -15.37777 -14.76905 -14.49646 -14.28438 -14.16762 -13.62042 -13.28955 -13.17551 -13.14168 -13.06272 -12.79860 -12.77382 -12.47468 -12.24289 -12.16831 -12.09559 -12.07664 -11.18372 -11.07765 -11.02123 -10.94911 -10.88180 -10.71524 -10.64323 -10.38724 -10.32707 -10.23424 -10.13590 -9.82960 -9.64180 -9.10679 -8.67230 -8.16677 -7.56885 -6.66558 -4.11795 1.44430 1.73176 1.75321 1.99206 2.38287 2.98581 3.15827 3.20672 3.29399 3.38714 3.89507 4.00186 4.09173 4.21260 4.28673 4.31888 4.33393 4.55128 4.59990 4.73787 4.87376 4.98725 5.04823 5.06056 5.16492 5.19832 5.35765 5.36996 5.39533 5.44754 5.58921 5.69351 5.79637 5.84925 5.87936 5.94664 6.15741 6.27396 6.35426 6.42919 6.45210 6.76082 6.90727 6.96771 6.98411 7.32588 7.43510 7.53947 7.70184 8.23197 8.87163 8.93764 10.40393 Molecular weight = 367.14amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.001930 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.150875 B =14502.346150 C =15169.401721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.837 5.837 3 C -0.262 4.262 4 H 0.124 0.876 5 C 0.064 3.936 6 N -0.831 5.831 7 Si 0.879 3.121 8 H -0.271 1.271 9 H -0.288 1.288 10 H -0.255 1.255 11 S 2.569 3.431 12 O -1.003 7.003 13 O -0.975 6.975 14 C -0.709 4.709 15 C 0.027 3.973 16 C -0.215 4.215 17 C 0.241 3.759 18 N -0.747 5.747 19 C 0.115 3.885 20 C 0.109 3.891 21 N -0.724 5.724 22 C 0.544 3.456 23 O -0.538 6.538 24 C -0.197 4.197 25 C -0.152 4.152 26 C -0.147 4.147 27 C -0.221 4.221 28 C 0.012 3.988 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.280 0.720 33 H 0.138 0.862 34 H 0.122 0.878 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.405 0.595 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -15.715 -18.926 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.663 5.663 3 C -0.408 4.408 4 H 0.141 0.859 5 C -0.150 4.150 6 N -0.468 5.468 7 Si 0.706 3.294 8 H -0.197 1.197 9 H -0.215 1.215 10 H -0.179 1.179 11 S 2.669 3.331 12 O -0.993 6.993 13 O -0.965 6.965 14 C -0.791 4.791 15 C 0.007 3.993 16 C -0.238 4.238 17 C 0.138 3.862 18 N -0.378 5.378 19 C -0.010 4.010 20 C -0.015 4.015 21 N -0.376 5.376 22 C 0.331 3.669 23 O -0.414 6.414 24 C -0.218 4.218 25 C -0.189 4.189 26 C -0.185 4.185 27 C -0.244 4.244 28 C -0.008 4.008 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.239 0.761 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.137 0.863 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.259 -16.128 -18.748 25.095 hybrid contribution -0.794 0.124 -1.659 1.843 sum -5.053 -16.005 -20.407 26.422 Atomic orbital electron populations 1.21549 0.81201 1.00856 1.01798 1.53759 1.11378 1.19855 1.81344 1.19321 1.10220 0.84331 1.26919 0.85904 1.25762 0.97457 0.95051 0.96745 1.69834 1.41222 0.98282 1.37433 0.86900 0.80565 0.79673 0.82217 1.19744 1.21456 1.17874 1.09212 0.73839 0.73896 0.76125 1.93352 1.65825 1.61692 1.78434 1.93387 1.41085 1.84518 1.77485 1.31874 1.03172 1.13129 1.30925 1.20705 0.94153 0.91805 0.92662 1.20675 1.00881 1.05919 0.96307 1.17860 0.93506 0.91571 0.83215 1.44373 1.24959 1.58631 1.09845 1.21356 0.92914 0.95871 0.90852 1.21406 0.92483 0.96223 0.91374 1.45700 1.25159 1.54539 1.12248 1.19690 0.86445 0.79578 0.81201 1.90721 1.29587 1.54555 1.66586 1.22188 0.99638 0.99530 1.00487 1.22964 1.03523 0.89990 1.02461 1.22976 1.04492 1.01271 0.89712 1.20618 0.98667 1.08920 0.96210 1.20618 0.96373 0.90885 0.92930 0.92110 0.92545 0.92637 0.90953 0.84387 0.85994 0.76343 0.91475 0.91491 0.90629 0.90676 0.76093 0.85632 0.88184 0.87568 0.87728 0.87337 0.86346 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.85 8.98 59.85 0.54 2.39 16 2 N -0.84 -19.44 2.90 -66.68 -0.19 -19.63 16 3 C -0.26 -6.72 9.60 -15.06 -0.14 -6.87 16 4 H 0.12 3.41 7.58 -52.49 -0.40 3.02 16 5 C 0.06 1.62 5.31 -17.43 -0.09 1.53 16 6 N -0.83 -21.84 13.97 55.49 0.78 -21.06 16 7 Si 0.88 19.20 24.93 -169.99 -4.24 14.96 16 8 H -0.27 -5.57 6.68 56.52 0.38 -5.19 16 9 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 11 S 2.57 58.60 5.61 -107.50 -0.60 58.00 16 12 O -1.00 -23.52 16.40 -57.18 -0.94 -24.46 16 13 O -0.97 -24.75 16.19 -57.18 -0.93 -25.68 16 14 C -0.71 -14.31 5.98 -39.54 -0.24 -14.54 16 15 C 0.03 0.50 9.51 -39.61 -0.38 0.13 16 16 C -0.21 -3.41 9.90 -39.38 -0.39 -3.80 16 17 C 0.24 3.48 6.65 -83.79 -0.56 2.92 16 18 N -0.75 -7.80 5.73 -58.64 -0.34 -8.14 16 19 C 0.12 0.91 5.03 -4.04 -0.02 0.89 16 20 C 0.11 0.82 5.79 -4.04 -0.02 0.80 16 21 N -0.72 -4.79 5.56 -60.30 -0.33 -5.13 16 22 C 0.54 4.76 7.61 -10.99 -0.08 4.68 16 23 O -0.54 -6.92 16.26 5.56 0.09 -6.83 16 24 C -0.20 -1.14 6.19 -91.77 -0.57 -1.71 16 25 C -0.15 -0.74 10.23 -26.73 -0.27 -1.01 16 26 C -0.15 -0.83 10.04 -26.73 -0.27 -1.10 16 27 C -0.22 -3.33 9.31 -39.38 -0.37 -3.70 16 28 C 0.01 0.21 9.51 -39.61 -0.38 -0.17 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.14 3.13 -51.93 -0.16 0.98 16 31 H 0.05 0.98 7.88 -51.92 -0.41 0.57 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.14 2.61 7.61 -52.49 -0.40 2.21 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.40 3.57 8.48 -40.82 -0.35 3.23 16 36 H 0.07 0.50 7.96 -51.93 -0.41 0.08 16 37 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 41 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.10 0.40 8.14 -51.92 -0.42 -0.03 16 45 H 0.11 0.80 7.67 -51.93 -0.40 0.40 16 46 H 0.12 1.41 6.73 -52.49 -0.35 1.06 16 47 H 0.13 2.13 7.61 -52.48 -0.40 1.73 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -33.83 402.50 -10.46 -44.29 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.58 Total: 7.17 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.24 Total: -19.56 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.09 Total: -53.95 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -1.77 Total: -56.96 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.24 Total: 14.96 kcal Atomic # 16 Polarization: 58.60 SS G_CDS: -0.60 Total: 58.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.83 -10.46 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952883536.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.068 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds